ID AB076038; SV 1; linear; genomic RNA; STD; VRL; 5708 BP. XX AC AB076038; XX DT 07-JAN-2003 (Rel. 74, Created) DT 24-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Soybean dwarf virus genomic RNA, complete genome, strain:DC, DE isolate:HS99-5. XX KW . XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5708 RA Terauchi H., Kanematsu S., Hidaka S.; RT ; RL Submitted (12-DEC-2001) to the INSDC. RL Contact:Seiji Kanematsu National Agricultural Research Center for Tohoku RL region, Laboratory of Plant Disease Management; 4-Akahira, RL Shimo-Kuriyagawa, Morioka, Iwate 020-0198, Japan XX RN [2] RX PUBMED; 18943620. RA Terauchi H., Honda K., Yamagishi N., Kanematsu S., Ishiguro K., Hidaka S.; RT "The N-Terminal Region of the Readthrough Domain Is Closely Related to RT Aphid Vector Specificity of Soybean dwarf virus"; RL Phytopathology 93(12):1560-1564(2003). XX DR MD5; 8ebb73d56fbd46f863e7c2cbb494cca7. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5708 FT /organism="Soybean dwarf virus" FT /strain="DS" FT /sub_strain="severe type" FT /isolate="HS99-5" FT /mol_type="genomic RNA" FT /db_xref="taxon:12049" FT 5'UTR 1..126 FT CDS 127..1212 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="replicase" FT /db_xref="GOA:Q8B6M8" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q8B6M8" FT /protein_id="BAC54063.1" FT /translation="MFNFDSLVTATARVVKDFISFCYNRARHVYYALKRWLWELQGVFA FT AHDAFVDMCYDAMYGVEEFEWELQKQYSTAEIDVQLAEHEYERLLADGAPLGSWPQPCA FT PQGSFRSSDDFDVAARAAVANPIVDPQPSLIKGCGDKSPSNPTRIEKFINLVQKKEVLS FT ATEALIKHTYEEQIGESPFGKWFNTLPNRMNYIKRAAAKQAKAAKRSKSVRQMVTEVNV FT IPDFISCCDVVQVDTGEKLPTKKDKEGNELPPEPKLKMFRRVKPEHVGDARKYICQHIR FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTEMLIKYAMVMVPLPRKSDIEAAKI FT VQSPAARQIRHELGVLNAEVF" FT CDS <1197..2810 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2" FT /product="replicase" FT /note="This protein is translated by minus 1 (-1) ribosomal FT frameshifting." FT /db_xref="GOA:Q8B6M7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8B6M7" FT /protein_id="BAC54064.1" FT /translation="RRGFLEGLCSDSGFESPFSILGLPEIVVRSGAIPRKSRSTINYLS FT QFSLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNIPGIFSNLDYFRKSIVDK FT VGCPRTFSPEELAATYHSGKRTLYNAAVQSLKRKAVERSDANVTAFLKMEKHLMCKKIA FT PRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFDSPTVLSGYDSFKVGKIIANKWSKF FT KRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFNDPILKELLHWQTENKIMLFVEDKIL FT KFKVKGHRMSGDINTSSGNKLIMCGMMHYYFKSLGVKAELCNNGDDCVIICEKKDENKF FT SHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKQESISKDAHSLISM FT ASAEDVKTFMSATAQCGMILNSGVPVLDAFHKCLYKASGYKKVSQEAIERIVSFGTQDK FT LGLRKERVEEPITMDNRLSYWESFGVDPQTQVLVERYFDNLQVHIEPRGVKRLTPLLDK FT TLLSIASVARTSVSLPILSK" FT CDS 3018..3620 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF3" FT /product="coat protein" FT /db_xref="GOA:Q8B6M6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8B6M6" FT /protein_id="BAC54065.1" FT /translation="MVAVSNVTIQRRRNRRVARSAPRVQLMAIPTTTGATQRRRRQRRR FT RRNNRGGGNLSGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE FT WHDTSEDQFKVHYKGNGDTKIAGSFKITIVVLTQNPK" FT CDS 3034..3603 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q8B6M5" FT /protein_id="BAC54066.1" FT /translation="MSQYNDDAIVESHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV FT KTSLRSTTRGTETPRSQAPSRSRSLS" FT CDS <3621..5090 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF5" FT /product="readthrough protein" FT /note="This protein is translated by in-frame readthrough FT of the ORF3 stop codon." FT /db_xref="GOA:Q8B6M4" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8B6M4" FT /protein_id="BAC54067.1" FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLISAR FT QSSDSISLYSIRSQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLM FT INGDKFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME FT FGMVSVVLDEHLEGARSSQYVRKTLRPGHISVNRSHRLQEMPPTREDFSEEDNSSSDSN FT TYKTDNSRMTVHIVKAGDEESYATDQTDDVEPTLLDADVMKFSGFVGARDRFTLQGAEP FT IGPGDRTSRRFRPSATLKAAFHSGPTPDELYNAGVEQADHDFEHFVSRGKEKLHGEDPM FT AKLEREAEDLKPDSDNEDNDYDRTASVFNPADGDPWSGIKIKPRLKDQDMRSTLSTGTL FT KGGSLKPKKELPPRFEPAPKSVLDRIRRRQV" FT 3'UTR 5091..5708 XX SQ Sequence 5708 BP; 1695 A; 1223 C; 1326 G; 1464 T; 0 other; agtaaagttg acacctttac agaagtgttc ttgctagtaa gagttatttc cttgtgaagt 60 aatacaagaa cctcctccca gcatcttcgt atcgtgtttg aggaatctct agtgttattg 120 ttagttatgt ttaacttcga tagcttagtt acagccaccg ctagggtggt taaagatttt 180 atttcttttt gctataatag ggcacggcat gtttattatg ccctaaaaag atggctctgg 240 gaactccagg gtgtatttgc tgcacatgac gcctttgtcg acatgtgcta tgacgccatg 300 tatggcgttg aggagttcga atgggaactg caaaagcagt attccactgc agagattgac 360 gtgcaattag ctgagcacga atacgagcgc ctacttgccg atggcgctcc actagggtca 420 tggccacaac catgtgcgcc ccaaggctca ttcaggtcgt ctgacgactt cgatgtagct 480 gctagggctg ctgtggcaaa ccctattgtg gacccacaac cctccttgat taaagggtgt 540 ggcgataaat caccttccaa tcccactagg attgagaagt tcatcaacct cgttcaaaag 600 aaggaggtac tttccgccac tgaggctcta atcaaacata catatgaaga gcaaatcggt 660 gaatcaccat tcggaaagtg gttcaacact ctgcccaata gaatgaatta tataaagagg 720 gcagcagcaa aacaagccaa ggcggctaaa cgatctaaat ctgtccgcca aatggtcacc 780 gaggtaaatg tcatccccga ctttatctct tgctgtgatg ttgtccaggt ggacactggt 840 gagaagctcc ctactaagaa agataaagaa gggaatgaat tgccacctga gcctaaactt 900 aaaatgttta gaagggtgaa gcctgagcat gttggtgatg ccaggaaata tatctgtcaa 960 cacattcgca acaataatat gaggttgata gacggctctg atgtttccca tgcaaccatc 1020 aaccgatatg cgctcaagtt ttgcgaagac ttagagcttg atatgaccag cactgaaatg 1080 ctcatcaaat atgctatggt catggtccca ctccctcgaa aatctgatat cgaggctgct 1140 aaaatcgtcc aatctcctgc tgccaggcaa ataaggcatg agttgggcgt gcttaacgcc 1200 gaggtttttt agaggggctc tgctccgact ctggttttga atccccgttt tctattttgg 1260 ggttgccaga gatcgtggtg cgaagtgggg ctatccctag gaagagtcgt agtactatta 1320 attatttgag tcagtttagt ttaggtctag attaccaatg ccctaatccc agtttgcata 1380 acgcattggt agcggttgaa cgtagagtgt tcaccgttgg gaaaggaaat gaggtagtgc 1440 taccttacaa gaacatacca ggaatctttt ctaatcttga ttatttccgc aaatctattg 1500 tggataaggt tggttgccct aggacgttct cccctgaaga acttgcagcg acgtatcact 1560 ctggtaagag aacgttgtat aatgctgctg ttcaaagtct taaacgtaag gctgttgaga 1620 ggagtgacgc gaatgtgaca gctttcctta agatggagaa gcaccttatg tgtaagaaga 1680 tagcacccag gttgatatgt ccccgcaaca aaagatataa tgttgaattg ggacgtcggt 1740 tgaaattcaa tgagaagaaa ttcatgcatg caatcgactc aacttttgat tccccgactg 1800 tattaagtgg atatgacagt tttaaagttg ggaagataat agccaataaa tggtcgaaat 1860 tcaaacgacc agttgcaata ggtgttgatg caagcagatt tgatcaacat gtgggggtag 1920 aagcactcca atgggagcac tcaatctata acggtgcatt caatgatccc attctgaagg 1980 agttgctaca ctggcaaaca gagaacaaaa taatgctgtt tgttgaagat aaaatcctca 2040 agtttaaggt caaaggacac agaatgtccg gtgacattaa cacctcttct ggcaacaaat 2100 taatcatgtg tggtatgatg cactactact tcaagtcact tggagtcaaa gccgaactct 2160 gcaataacgg cgatgattgt gttatcattt gcgagaagaa agatgaaaat aagttctcac 2220 acatgcatag ctggtttaaa gactatgggt ttgacatgca gattgagact cctgtctaca 2280 agattgggca gatagagttt tgtcaaagta aaccagttaa aattaatggc tattatagaa 2340 tggtgcgcaa acaagaaagc atatccaaag acgcccattc cctcatttct atggcatcag 2400 ctgaagatgt caaaacattt atgagtgcca ccgctcaatg cgggatgatc ttgaatagtg 2460 gtgtacctgt tcttgatgct tttcacaaat gcctatacaa agcatcgggg tacaagaaag 2520 tatcgcagga agcaatcgag aggatagtct ccttcggaac gcaggacaaa ctcgggctca 2580 ggaaagagcg agttgaagaa ccaataacga tggataatag gttgagttat tgggagtcct 2640 ttggggttga cccgcagaca caggtccttg tcgaacgata ttttgacaat ctgcaggtcc 2700 atatcgaacc ccgcggcgta aagagattga cgcctttact cgataaaact ttgctttcaa 2760 ttgcgagtgt agcacgaaca tctgtgtcgc taccaatact ttcaaaatag aagcactcat 2820 aatcaccata gtagttatag tactagtagt agttagttgt ttagattacg ctagttcgta 2880 caagtaagtt gcaacggatt accgattttt atctggtttt gctatcggct ttatagctag 2940 cataccaata tcaatattgg caatttactt tgtttaccta aaaatttcaa agaatctgag 3000 aggaatcatc aacgaatatg gtcgcggtta gcaatgtcac aatacaacga cgacgcaatc 3060 gtagagtcgc acgaagcgct ccacgagttc agctcatggc tattccaacg accaccggcg 3120 caacacagcg ccgaagaaga caacgacgac gaaggagaaa taatagagga ggaggcaatc 3180 tttccggagg atcaggcaag gctcacacat tccagttttc gaaggacggc atcaatggca 3240 gttccaaggg aactatcact ttcgggccgt ctttatcaga gtgcaagcca ctctctgatg 3300 gaatactcaa ggcctaccat gaatataaga tcacgagtat cttattacag ttcatctccg 3360 aggcctcttc cacctcgtca ggctccatcg cttatgagct tgacccacac tgcaagtact 3420 ccgaaattca atcgctactc aataaattct caattacaaa gagcggttcg aaacgattcc 3480 ccaccaaggt tatcaatggc ctcgaatggc atgataccag tgaagaccag tttaaggtcc 3540 actacaaggg gaacggagac accaagatcg caggctcctt caagatcacg atcgttgtct 3600 taactcagaa tcctaaatag gtagacggag aaccgggtcc gaaaccaggt ccagacccag 3660 caccccagcc aacaccaaca cccgaaccaa cgccagccaa acacgagaga tttatcgcgt 3720 acaccggtac gttgtccacg cttattagcg cgcgacagtc ttctgacagt atctcactct 3780 actccatccg gagtcagagg attagatata tcgaagatga aaattccagt tggacaaaca 3840 tagatgcaaa atggtactcg cagaattctg ttgaggccat tccaatgttt gtttatccag 3900 tgcccgaagg cacttggtca attgaaatat cttgtgaagg ttaccaggca gcgtcaagta 3960 catcagaccc ccatcgtgga aaatgcgatg gcatgattgc ttacgacgac gattcttcaa 4020 aggtgtggaa tgttggtcag cagaataacg taaccattac caataataag gccgataatg 4080 attggaaata tggtcaccct gatctcatga tcaatggtga caaattcgat cagaatcaag 4140 tagtcgagaa agatggaatc atttcattcc atttagtaac tactggccca aacgcaagtt 4200 tctttctcgt cgctccagct gttaagaaaa cagctaaata caacttttgt gtatcatatg 4260 gagattggac ggatagagat atggagtttg gaatggtatc agtagtgctc gatgagcact 4320 tggagggagc aaggagttct cagtatgtta ggaaaacgct aagaccaggt catattagcg 4380 tcaatcgttc ccaccgattg caagaaatgc ctcccacgcg agaggatttc agtgaggaag 4440 ataatagtag tagtgatagt aatacatata aaacagacaa ttctcgcatg accgttcaca 4500 ttgtaaaagc aggtgacgag gagagttatg caacagatca aacagacgat gttgagccca 4560 cacttcttga tgctgatgtc atgaagttct ccgggtttgt tggcgctagg gacaggttta 4620 cattgcaggg tgccgaacca atcggcccag gtgacagaac ctcccgtcgt ttcagaccgt 4680 ctgctacact aaaggctgcg ttccattcgg gaccgacccc tgatgagttg tataatgctg 4740 gtgttgaaca agcggatcac gacttcgaac actttgtctc ccggggcaaa gagaagctgc 4800 atggcgaaga tccaatggcc aaactcgaaa gagaggctga ggatttgaaa cctgatagcg 4860 acaacgaaga caacgattat gatcgaaccg cttctgtgtt caacccagca gatggtgacc 4920 cttggtcggg cattaaaatt aagcctagat taaaagacca agacatgagg tccaccttga 4980 gcactggtac cttgaaagga ggttcactga aaccgaagaa agaactcccc ccaaggtttg 5040 aaccagcgcc aaagtctgtt ttagatagaa ttagacgtag gcaagtctag tcttgcacca 5100 acatagaagt agttagcgct ttccattatt atttatagga gccaaatttg gtgagtcccg 5160 atcgatggat cctggtaaac aggttcggtg aataaaaagc cggtaatctc ggggagatgt 5220 ctactcccgt cgtatcactt tcggttgcat atccagaaaa taaccctata tttaataact 5280 aaaaattaga tagtttccgc ctctcttgca aaccacatgc aagatgcgag cttgtggaga 5340 gtaccctccc ttgaataagg agggttgaaa gtttctggtt cccaaaccat tgatcaaaat 5400 tggctctgct tctggtgatt acactgccgc tgaaataaca gcgtaaacaa attgttagta 5460 gctactccgt gaaaagagag tggctagtac gccccttaga tggcgttaaa tgaaagcgta 5520 ggttttacga caccccctgt caaggacagt caaccttgcg aagtcgggag aatgcccgat 5580 agactgtggt ctagtattaa aatgactcga gggctcttcc tcgttaaaaa gggggcgatg 5640 acaggaaact gttgtcatta ggcgaaagcc tctttgttgt taaggtggcc atcaggtcca 5700 cctgcccc 5708 //