ID AB076001; SV 1; linear; genomic DNA; STD; VRL; 2878 BP. XX AC AB076001; XX DT 18-APR-2002 (Rel. 71, Created) DT 02-NOV-2009 (Rel. 102, Last updated, Version 5) XX DE Torque teno sus virus 1 ORF3, ORF2, ORF1 genes, complete cds, isolate: DE Sd-TTV31. XX KW . XX OS Torque teno sus virus 1a OC Viruses; Anelloviridae; Iotatorquevirus. XX RN [1] RP 1-2878 RA Okamoto H.; RT ; RL Submitted (12-DEC-2001) to the INSDC. RL Contact:Hiroaki Okamoto Jichi Medical School, Immunology Division and RL Division of Molecular Virology; 3311-1 Yakushiji, Minamikawachi-Machi, RL Kawachi-Gun, Tochigi-Ken 329-0498, Japan XX RN [2] RX PUBMED; 12029143. RA Okamoto H., Takahashi M., Nishizawa T., Tawara A., Fukai K., Muramatsu U., RA Naito Y., Yoshikawa A.; RT "Genomic characterization of TT viruses (TTVs) in pigs, cats and dogs and RT their relatedness with species-specific TTVs in primates and tupaias"; RL J. Gen. Virol. 83(Pt 6):1291-1297(2002). XX DR MD5; 54cfaa8b4ae4dd841b58af885b84d230. DR EuropePMC; PMC1143717; 15956568. DR EuropePMC; PMC3047579; 21407810. DR EuropePMC; PMC3384279; 23277695. DR EuropePMC; PMC3486326; 23043181. DR EuropePMC; PMC5508382; 28725107. XX FH Key Location/Qualifiers FH FT source 1..2878 FT /organism="Torque teno sus virus 1a" FT /isolate="Sd-TTV31" FT /mol_type="genomic DNA" FT /country="Japan" FT /isolation_source="pig" FT /note="originally submitted as 'Torque teno virus'" FT /note="synonym: TT virus" FT /db_xref="taxon:687386" FT regulatory 287..292 FT /regulatory_class="TATA_box" FT CDS join(430..647,2031..2487) FT /codon_start=1 FT /transl_table=1 FT /note="ORF3" FT /db_xref="UniProtKB/Swiss-Prot:Q8QVM1" FT /protein_id="BAB90846.1" FT /translation="MKEKDYWEEAWLTSCTSIHDHHCDCGSWRDHLWTLCALDDADLAA FT AADIIEREEADGGEDFGFVDGDPGDAGGSAACTSLPPESKIPALLTRPILSEWSEQLHT FT PNTPGKAESRPKLEIKVSPLPLSVPSVQLHQIPTRSRRSSKPRKPRKKRKERVRPVSRV FT PKALLREMDRLMTKQRDALPESESSSYFSSDSLTDPWTTSDDDFQSDPDPLTNKRKKRL FT QF" FT CDS 430..651 FT /codon_start=1 FT /transl_table=1 FT /note="ORF2" FT /db_xref="UniProtKB/Swiss-Prot:Q8QVM0" FT /protein_id="BAB90847.1" FT /translation="MKEKDYWEEAWLTSCTSIHDHHCDCGSWRDHLWTLCALDDADLAA FT AADIIEREEADGGEDFGFVDGDPGDAGG" FT CDS 534..2441 FT /codon_start=1 FT /transl_table=1 FT /note="ORF1" FT /db_xref="GOA:Q8QVL9" FT /db_xref="InterPro:IPR004219" FT /db_xref="UniProtKB/Swiss-Prot:Q8QVL9" FT /protein_id="BAB90848.1" FT /translation="MRFRRRRFGRRRRYYRKRRGGWRRRFRIRRRRPWRRWRVRRWRRS FT VFRRRGRRARPYRISAWNPKVLRNCRITGWWPVIQCMDGMEWIKYKPMDLRVEANRIFD FT KQGSKIETEQMGYLMQYGGGWSSGVISLEGLFNENRLWRNIWSKSNDGMDLVRYFGCRI FT RLYPTENQGYLFWYDTEFDEQQRRMLDEYTQPSVMLQAKNSRLIVCKQKMPIRRRVKSI FT FIPPPAQLTTQWKFQQELCQFPLFNWACICIDMDTPFDYNGAWRNAWWLMRRLQNGNME FT YIERWGRIPMTGDTELPPADDFKAGGVNKNFKPTGIQRIYPIVAVCLVEGNKRVVKWAT FT VHNGPIDRWRKKQTGTLKLSALRRLVLRVCSESETYYKWTASEFTGAFQQDWWPVSGTE FT YPLCTIKMEPEFENPTVEVWSWKATIPTAGTLKDYFGLSSGQQWKDTDFGRLQLPRSSH FT NVDFGHKARFGPFCVKKPPVEFRDSAPNPLNIWVKYTFYFQFGGMYQPPTGIQDPCTSN FT PTYPVRMVGAVTHPKYAGQGGIATQIGDQGITAASLRAISAAPPNTYTQSAFLKAPETE FT KEEERESETSFTSAESSSEGDGSSDDQAERRAARKRVIKLLLKRLADRPVDNKRRRFSE FT " FT regulatory 2458..2463 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 2878 BP; 835 A; 687 C; 797 G; 559 T; 0 other; tacacttccg ggttcaggag gctcaatttg gctcgcttcg ctcgcaccac gtttgctgcc 60 aggcggacct gattgaagac tgaaaaccgt taaattcaaa tttgaaaatg gcgggcaaaa 120 tggcggacag ggggcgggga ttatgcaaat taatttatgc aaagtaggag gagctcgatt 180 ttaatttatg caaagtagga ggagtcattt ctgattggtc gggagctcaa gtcctcattt 240 gcatagggtg taaccaatca gatttaaggc gttcccacta aagtgaatat aagtgagtgc 300 agttccgaat ggctgagttt atgccgccag cggtagacag aactgtctag cgactgggcg 360 ggtgccggag gatcccagat ccggagtcaa ggggcctatc gggcaggagc agctgagcgg 420 agggcctaca tgaaggagaa agactactgg gaagaagcct ggctgaccag ctgtacatcc 480 atacacgacc accactgcga ctgcggtagc tggagagacc acctgtggac gctatgcgct 540 ttagacgacg cagatttggc cgccgccgca gatattatag aaagagaaga ggcggatgga 600 ggagaagatt tcggattcgt agacggcgac cctggagacg ctggcgggta aggagatggc 660 ggcgttccgt cttccgtaga aggggacgta gagcgcgccc ctaccgcatt agcgcgtgga 720 accctaaggt tctaagaaac tgccgcatca caggatggtg gccagtaata cagtgtatgg 780 acgggatgga gtggataaaa tacaagccga tggacttaag agtcgaggca aaccggatat 840 tcgataaaca gggcagtaag atagagacag aacagatggg atacttaatg cagtacggag 900 gaggatggtc aagcggagta atcagcttag agggactttt caatgaaaac agactgtgga 960 gaaacatatg gtctaaaagc aatgacggga tggacttggt cagatacttc gggtgcagaa 1020 ttagactata tccaacagag aatcagggct acttgttctg gtatgacaca gaatttgacg 1080 aacagcagag aagaatgtta gacgaatata cacaacctag tgtaatgctg caggctaaaa 1140 actcccgttt aatagtatgt aaacaaaaga tgccaattag acggagagta aagagcattt 1200 tcataccgcc accggcacag ttaacaacac agtggaagtt tcagcaggaa ctgtgtcaat 1260 ttccattatt taactgggcc tgtatctgta tagacatgga cacgccgttc gactacaacg 1320 gcgcatggcg aaatgcctgg tggctaatga gaaggcttca aaacggaaac atggagtaca 1380 tagaaagatg gggcagaata ccgatgacag gagacacaga actgccacca gcagacgact 1440 tcaaggcagg aggggtgaac aaaaacttca aaccgacagg tattcagaga atatacccta 1500 tagtagcagt atgcctagtg gagggaaaca agagagtagt gaaatgggcc acagtacaca 1560 atgggccaat agacagatgg agaaaaaaac agacaggaac gttaaaacta tctgcactga 1620 gaagactagt gcttagagta tgctcagaaa gtgagacata ctataagtgg acagcatcag 1680 aatttacagg agcatttcag caggactggt ggccagttag cggaacagaa tacccgttat 1740 gtacaattaa aatggagcca gaattcgaaa acccgacagt agaggtgtgg tcatggaaag 1800 caactatacc gacagcagga acactgaaag actatttcgg gctcagttca gggcaacagt 1860 ggaaggacac tgactttggc aggctgcaat tacccagaag cagccacaat gttgactttg 1920 gacataaagc tagatttggc ccattttgtg tgaaaaagcc tccagtagaa ttcagagact 1980 cagcccccaa cccactaaat atctgggtga aatacacatt ctattttcag ttcggcggca 2040 tgtaccagcc tcccaccgga atccaagatc cctgcacttc taacccgacc tatcctgtca 2100 gaatggtcgg agcagttaca caccccaaat acgccgggca aggcggaatc gcgacccaaa 2160 ttggagatca aggtatcacc gctgcctctc tccgtgccat cagtgcagct ccaccaaata 2220 cctacacgca gtcggcgttc ctcaaagccc cggaaaccga gaaagaagag gaaagagaga 2280 gtgagaccag tttcacgagt gccgaaagct cttctgaggg agatggatcg tctgatgacc 2340 aagcagagag acgcgctgcc agaaagcgag tcatcaagct acttctcaag cgactcgctg 2400 acagacccgt ggacaacaag cgacgacgat tttcagagtg accctgaccc cctcaccaat 2460 aaacgcaaaa agcgcttgca attctaattc gctgtccgtg tattcattgg gggggtccgg 2520 gggggcttgc ccccccgtta gttgggttct cgcactcccg cctgccaagt gaaagtcggg 2580 gacgagtgag tgcgggacat cccgtgtaat ggctacataa ctacccggct ttgcttcgac 2640 agtggccgtg gctcgaccct cacacaacaa tgcagatagg gggcgcaatt gggatcgtta 2700 gaaaactatg gccgagcatg gggggggctc cgcccccccc aacccccccg gtgggggggc 2760 caaggccccc cctacacccc cccatggggg gctgctgccc cccaaacccc ccgcgtcgga 2820 tggggggggc tgcgcccccc ccaaaccccc cttgcccggg gctgtgcccc ggaccccc 2878 //