ID AB073147; SV 1; linear; genomic RNA; STD; VRL; 7471 BP. XX AC AB073147; XX DT 17-APR-2002 (Rel. 71, Created) DT 30-SEP-2018 (Rel. 138, Last updated, Version 4) XX DE Cycas necrotic stunt virus PP1 gene for polyprotien 1, complete cds. XX KW . XX OS Cycas necrotic stunt virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7471 RA Iwanami T.; RT ; RL Submitted (16-OCT-2001) to the INSDC. RL Contact:Toru Iwanami National Institute of Fruit Tree Science, Department RL of Plant Protection; Fujimoto 2-1, Tsukuba, Ibaraki 305-8605, Japan XX RN [2] RX DOI; .1007/s00705-002-0876-5. RX PUBMED; 12417954. RA Han S., Karasev A.V., Ieki H., Iwanami T.; RT "Nucleotide sequence and taxonomy of Cycas necrotic stunt virus. Brief RT report"; RL Arch. Virol. 147(11):2207-2214(2002). XX DR MD5; bbf386cf68b86994c7ee4809945d518b. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..7471 FT /organism="Cycas necrotic stunt virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:173976" FT CDS 157..7167 FT /codon_start=1 FT /transl_table=1 FT /gene="PP1" FT /product="polyprotein 1" FT /note="contains RNA polymerase" FT /db_xref="GOA:Q8QVV0" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:Q8QVV0" FT /protein_id="BAB89369.1" FT /translation="MGWICPNVSCLGHTSVLSNKEISREGRCERAMCGSLLVKVAVPQQ FT PAKKKKQATPAPRPTYPPCVVEKTAATPVTVEKVFVEVIPTVPSCLAPKWMLGIQRVEG FT APSKAPKQAVPKWVWQMRQLLKAALTGANSFGPRYVRAHFSRARISWIYAQLCEGCPLP FT LWNRGRALKKSSLALLARIEDTKQQKRAAWEKKEAAPLKSKREYEQKRALLIPLIEKLR FT ARLLQDEARELREQLFPSGNGGTDTTKVAAASKAEIKAAAQLKAYQDVCAKVWRVKRQE FT KKAQQAKLVEDLITSANCGKQDVSEPAIEKAARPKRRIEIGDFVPQKTLWGLYPCVGLG FT ANMADPVCRVLSACVSIAGKRPDLVSTIYAFITGEAQVWLSAPRVCMLAKRIIELSDWY FT PHELLAEELKKISDEENCKEAEREINLKYLEISKATENMRANGLFNKLKGKAQDLWSGI FT VDFASHPFRKYLATAAEFVEGFSHRVVDAVMSRVNAAIAQFAAQLDIAKTLVDQLVIHV FT KRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVICAHMGLPLGGVITGVFTT FT AYMGWLFVKTPVGSELVMNLRMQVARIARNIFDVQRTGIPPDLPANPNVGFSVPYEAFG FT GIDNQPFSMGADVPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRM FT GKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVKDWITRSRGVLLDSCYT FT SLNNMICSDVVNKLVTDGEQIASNIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGV FT TVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTYIARNGQDNFFTTGYKRQ FT TVLQIDDLSCVENVPPIERELINLVSCSEYPLKMADLSDKSISFQSPFIISTSNQRTCL FT PTCGITHCEAFNNRRAVVVEMRRKPGVVFDPMDCHAAMQGRFLDKRDHTPLFGVQGQPE FT TFWKDVPEMTTILLNICVAHRQEQDILQEQHIRKHAVNDPLILASERFLKQESRKALCY FT MPRVEMEICGVQSQAAGCYYLCVDQKLYTCEDDGNLVETPCLNPSYAQWERNSSENFVG FT GVQALDALECRSILVSGILRNLVQGQCCVLSIDEMSRLPLCTQRLFKALQLQERVYLRL FT IQKKISHILSVDESNVYSKNAWMRCLEFAAASRDYLKEHGLEVLLLLAAMMILCVALYY FT FVGAFIGVMGGALSMGAAMAGLKEVDMKAQYSSGAQEGRYRSRNIPIRQRYRYARGELD FT EEVPLGGQLAVALYGSQGRFISALQYKGKSVMLTRHQMLMFAEKERVTCIYLATGESVV FT LTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVLRPDST FT AFIMTILKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCGMVCLAQVGGK FT KKIVGLLVAGVDQQTWADNLPNPCMAEMKSQIEYEFKLGAHTEGYTKLGYLTKDKTPHL FT PKKNNAVLVKPEYRIDSPVPIKEPSIISAEDPRCPKDAEGKPIDPIVKAFEKKFTTPMD FT LLEDDILESIAQEMVDEWQDCESEPLCDVPLEVAINGIPGTQIDDDDEFEDAVECLKMR FT TSPGYPYVLHKEPGMKGKEAYFELAPDGTRALKEGSLAAELYENIVQYSKSAIPELVVI FT ECPKDELLKTEKVNKACRPFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKAYS FT HDWTHMYQRLVAKSDRAINCDYSSFDGLLNSQVVSCIANMINSMYHSPEETVVSKRQRY FT NMINALFGRLAITGQEVMRVRAGLPSGFALTVVINSVFNEILMRYCFKVLVLGPQRNSF FT STYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGE FT LDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVENVDTLYELAL FT NVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPA FT KEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGY FT WVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYV FT AGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLANAE FT SESLLQEHKTGTVIGLTTEKFNLNGARDLIMQGQKLGKLPVMAATQAPNKFYVGLCCQK FT NFCPGHATSSDSIAKAFSQCWAMRCAPNSSSRKVTFEPEWRKNKFLGIS" XX SQ Sequence 7471 BP; 1977 A; 1504 C; 1851 G; 2139 T; 0 other; taattgatgt ctgggatagc gcccagcaat cttatgaacc acaggatagc gcctgtggaa 60 aatttgtgaa tcttgggata gcgcccaaga aactttcgaa gttgaggata gcgcctcaca 120 ttttatttct gtatatttta ttttaatttt gttgcaatgg gctggatttg cccaaatgtt 180 tcttgtttag ggcacactag tgtgctctca aataaagaga tctcccgtga agggagatgt 240 gagagagcca tgtgtggctc attacttgta aaggttgctg ttccacagca gcctgcgaag 300 aagaaaaagc aggcaacccc tgcccccagg cctacctatc ctccatgtgt tgtggagaag 360 actgctgcca ccccagttac ggtggaaaag gtttttgtgg aggtgattcc cacagtgcct 420 tcttgccttg ctccgaaatg gatgctcggc atacaaaggg tggaaggagc cccctctaaa 480 gctcctaaac aagctgtgcc caaatgggtg tggcagatgc ggcagctact gaaggctgcc 540 ctgactgggg caaattcttt tgggccccga tatgttcgag cccatttttc cagggctcgc 600 attagctgga tctatgccca gctctgtgaa ggatgccccc tccctctgtg gaataggggg 660 agagctttga agaaatcctc acttgccctc ttggcaagga ttgaggacac caagcagcaa 720 aagagagctg cttgggaaaa gaaggaggct gctcccctga agagcaaaag agagtatgag 780 caaaagagag ctcttctcat acctcttatt gagaaactaa gagctcgact cttgcaagat 840 gaggcaagag agctgaggga acaattgttc ccatctggaa atggtggcac tgataccacc 900 aaggtcgctg cagcctcgaa ggctgaaatt aaagctgcag cgcagttaaa ggcgtaccaa 960 gatgtgtgcg caaaggtttg gcgtgttaag cgccaagaaa agaaggccca acaggccaaa 1020 ttggtggagg atttgatcac ctctgccaac tgtggaaagc aggatgtttc ggaacctgct 1080 attgagaagg cggcacgacc aaaacgccgc atcgaaattg gtgactttgt gccccaaaaa 1140 accctttggg ggttgtatcc atgtgttggc ctcggtgcca atatggctga ccctgtgtgc 1200 agagtgctct ctgcatgcgt ttctattgct ggcaagcggc cagatttggt gtcaaccata 1260 tacgccttta tcacgggaga ggcacaagtt tggttgtctg cacctcgggt gtgcatgttg 1320 gccaagagaa tcattgaatt gagtgattgg tatccccatg agctccttgc agaagaattg 1380 aagaaaatct ctgatgaaga gaactgtaag gaggctgaaa gggagattaa tctcaaatat 1440 ttggaaatct ccaaggccac tgagaatatg cgcgccaatg gcttgtttaa caagcttaag 1500 ggaaaagccc aggatttatg gtctggcata gttgattttg cttcccatcc ttttaggaag 1560 tatttggcta ctgctgcaga atttgttgaa gggttttccc acagagtggt ggatgcagtg 1620 atgtcgcggg tgaatgccgc tattgctcag tttgctgccc aattggacat tgctaaaacc 1680 ctagtggacc agctagtcat tcatgtgaag cgctggtaca ctagtctgtg cacaagtttt 1740 gatgattcac tcaaactcct tggtaaatgg gctggttatg cccttggtct tattgttgga 1800 gttggagtgt gccaccttgt tgaggtgatt tgtgcacata tgggattgcc attgggtggt 1860 gtcattacag gagtgttcac cacagcatac atggggtggt tgtttgtaaa aacccccgtt 1920 ggcagcgagc tcgttatgaa tttgcgcatg caagttgcac gcattgcgcg aaatatcttt 1980 gatgtccaac gcactggaat cccaccagat ctcccagcaa atccaaatgt tggtttttcc 2040 gttccctatg aggcttttgg gggaatagac aaccaacctt tctctatggg agcagatgtc 2100 ccaaatgcac gggcgattcc cgttgtgagc cccatcatta atgccatggc tggctttgga 2160 gctagtatgc taagtatgaa agccatgggt ttgattgaaa tgggtaaact gggcgctgct 2220 tgccactcac tgagaatggg caaagatgct ttatgtgaat ttgtttctac tgttctgtac 2280 tattttggcc gtctagctga taaagtaaca ggtagagaaa cagaattctt tgatgaattg 2340 tcaattcttg tgcagattga cgtcaaagat tggatcacac gctctagggg ggtcctgtta 2400 gactcttgct acacttcatt gaacaacatg atttgctctg atgttgtaaa taagctcgtt 2460 actgatggcg agcagattgc aagtaacata gcaggaacgc ctagacggtt gagtttagat 2520 tttggtcaat tggtgagttc tatcatgaaa gatcttcttg atcttcaaca gcgtattgtg 2580 cgccatggtg tgactgtagg tcgtcgcaag gaacctactt ggatctacat ttttggaccg 2640 tcacactgtg gtaaatctaa tatgatggac cacctcactt cagaagtttg tcgttacttc 2700 gatttgccat acacttatat agctcgtaat ggtcaagaca atttctttac aacgggctac 2760 aagcgacaaa ctgttctcca aattgatgat ctttcctgtg ttgaaaatgt tccacctatt 2820 gaaagagagc tcatcaatct ggtatcgtgt tcggagtacc ctctgaaaat ggctgacttg 2880 tctgataaat ccatctcttt tcagtcacca tttatcattt ccacttctaa tcaacgcact 2940 tgcttgccta catgtggtat cactcactgt gaggccttta acaataggcg agccgtagtt 3000 gtggagatga ggaggaagcc aggggttgtt tttgatccca tggactgcca tgctgccatg 3060 caaggacgat tccttgacaa acgtgaccac acacctcttt ttggggtaca agggcagcca 3120 gagacctttt ggaaggatgt gccagaaatg acaacaattt tgctcaacat ctgtgtagcc 3180 cacagacagg agcaagacat cctccaagag caacatatcc ggaagcatgc tgttaatgat 3240 ccactcattt tggcttccga gagattcttg aagcaagaga gtagaaaagc tctctgttat 3300 atgccccgcg ttgaaatgga gatatgtggg gtgcaaagcc aggccgctgg gtgctattat 3360 ctgtgtgtag atcaaaaact ttatacatgc gaagatgatg gcaatctggt tgaaactccc 3420 tgcttaaatc cgagctacgc acagtgggag aggaactcct cagaaaattt tgtaggaggg 3480 gttcaggcct tggatgctct ggagtgtaga tcgattttgg tttcaggaat cttgcgcaat 3540 cttgtgcaag gacaatgttg cgtgttgtcc attgatgaaa tgtcacgact gccactatgc 3600 acacaacggc tttttaaggc actccagttg caagagcgag tctatctgag actcattcag 3660 aagaaaattt cacacatcct aagtgtagat gaaagcaacg tgtattcaaa gaatgcttgg 3720 atgaggtgtt tggaatttgc tgcagcctcc agggattatc tgaaagaaca tggactggaa 3780 gtgttgttgt tacttgcagc aatgatgatt ctgtgtgttg ccctctatta ttttgttgga 3840 gcctttatcg gggtgatggg gggtgcgctt tcaatgggag cagcaatggc tggtttgaaa 3900 gaagtagaca tgaaggctca atattcttca ggagcccaag aaggtcgtta tcgctcccgc 3960 aacattccta tcaggcaacg gtaccgctat gcacgcggag aattggatga agaggttccc 4020 ttagggggcc aacttgccgt tgctttgtat ggatcacaag gccgtttcat ttctgcatta 4080 cagtataaag gtaaatctgt gatgctcacg aggcatcaga tgttgatgtt tgcagaaaag 4140 gaacgtgtca catgcatata tctcgctact ggtgaaagtg ttgttttaac tttcaaccga 4200 gatgatgtgc aagagttccc caaccatgaa acatgtatgt ggcaagcagc tggcatgctc 4260 caattgccag caaagtttaa agactgtttc ttggagaaag gggagactga attagcccca 4320 gcttttgagc tggaggggta cgtattgaga cctgactcga ctgctttcat tatgaccata 4380 cttaaaacgt gggccagagt tcagtacgaa ccctttgttg tgcgtggtag tttggcaaag 4440 gaaaaatatg ttaatgagct accaacctca atctggttcc agtaccagtc gcgcaacaat 4500 gattgtggaa tggtctgcct agcacaagtt ggtggaaaga agaaaattgt tggacttctt 4560 gttgctggag tagatcaaca aacttgggcg gataatctac caaacccctg tatggctgag 4620 atgaagagcc aaattgagta tgagttcaaa cttggagcac atacagaggg atacactaag 4680 ttggggtatc taacaaagga caaaacaccc cacttgccca agaagaacaa tgcggtgctc 4740 gttaaaccag agtatcgtat tgatagtcct gtgcctatca aggagccttc catcatctcc 4800 gcagaggatc ctcgttgccc aaaagatgct gagggtaaac caattgatcc cattgtgaag 4860 gcctttgaaa agaaatttac gaccccaatg gatttacttg aagatgatat tttggagtcg 4920 attgcccagg aaatggttga tgagtggcaa gattgtgaaa gtgagccact ttgtgatgtg 4980 ccactggaag ttgctattaa tggtatccca ggaactcaga ttgatgatga tgatgaattt 5040 gaggatgccg ttgagtgtct taaaatgcgg acttcccctg gttatcctta tgtcttacat 5100 aaagaaccag ggatgaaggg gaaggaagcc tattttgagc tggctcctga tggcacgaga 5160 gctttgaaag agggttcgct tgctgcagag ttgtatgaaa atattgttca gtacagcaag 5220 agtgccattc ctgagcttgt ggtgattgag tgcccaaaag atgagttgct caagacagag 5280 aaagtaaaca aggcttgtag accttttgaa ataatgcccc tgcattacaa tctctttctc 5340 agagagaaaa ctcttgcttt ttcgctgttt cagcagcgta atcgccacaa gttggcctgt 5400 caagttggga ctaaggcgta ttcccatgat tggacacaca tgtaccaacg cctagttgcc 5460 aaatcagacc gcgccataaa ttgtgattat agcagttttg atgggctttt aaattctcag 5520 gtagtgagtt gcattgcaaa tatgataaat tctatgtacc actcgcctga agaaactgtt 5580 gttagcaagc gccaacgata taatatgata aatgctttgt ttggtcggct tgctattact 5640 ggccaggaag tgatgcgcgt gcgggctggg ctgccatctg gttttgcctt gacagtggtt 5700 ataaattctg tttttaatga aattttaatg cgctactgtt tcaaggtttt agttctaggc 5760 cctcagcgaa actccttttc cacttatgtc actttgttgg tgtatggtga tgacaacttg 5820 atgagttgca ctgataaaat tgctatatac ttcaatggag agactatcaa ggagacctta 5880 aagaagaaaa atgttactat tactgatggt agtgacaaga ctgcgcctga tattaagtgg 5940 aagactcttg gtgagcttga ctttctgaaa cgccgtttct tgaagttgga aactggtgtg 6000 gtgcaagcgc ccctagattt aactgccata ttctcgtgct tgcactgggt aactccccac 6060 ccacagaaga tgccgaaagg gggtgctcaa cttcaggttg aaaatgtgga tacactctat 6120 gagttagctt tgaatgtgca agttgcatta acagagttgt atctacacgg caacaaagag 6180 gagttccagc gggttcgaaa tttttatacg aagaaaatga atattcttcc tgctgggtac 6240 tatacttggg cagacaggga agctttccat atgtcaaaac aaactggaat ggaagcttat 6300 cagcctgcta aagaaattga tttggatgtg gggcaagaat ttgctcggtt tatgcataca 6360 tcagacattg gcaatcaagt ccattttaca cgccagtgct tggtagttgc agggcctttt 6420 tataagccca caccagatca acttttggtt tctacaactc ctctcaaaca aggagaaagt 6480 ggctattggg tgccagttga aaccggcatg ggcataggca atctacctac aattgcatgg 6540 gtccatcgct ttatgcgtcc gacccaactt gtggatgcct atggctataa aatatggggg 6600 aacgttcgct cccacattga aagtggcaaa agtcttgttt ttaggagtga agctccatat 6660 gttgctggta atgcagcttt gatggccttt ggtcaagcag caaagttgct tgagattaag 6720 acagcattga atctgtaccg taatgttata cctgaatcta cttatggttt ggaacagtat 6780 tttgatgctg ctatacctca agcttctctg cctggaactt tttaccttgc aaatgctgaa 6840 tcagagtctc ttttacaaga acataaaact ggtaccgtta ttggcttaac tacagaaaag 6900 tttaatctta atggtgccag agacttaatt atgcaaggtc agaagcttgg caagctgccc 6960 gttatggctg ccacgcaagc tcccaacaaa ttttatgttg gcttatgttg tcagaagaat 7020 ttttgtcctg gtcatgccac ctcgtctgac agtattgcaa aagccttttc tcagtgttgg 7080 gctatgcgtt gtgcccctaa ttcttccagc cgtaaggtta cttttgagcc tgagtggcgg 7140 aagaataaat ttttaggtat ttcttaaaga gaatatcccc ccaggcttca atggggttct 7200 gttttgaggc aagtttggtg tcgagataac caaattgaaa taactcgact tatccatctg 7260 aatgatgcgc gtttattgca cacgcggcga agctcaagtg catgtgcatt ttcttttggt 7320 ttgttttgtt tggtttgtgt tttagctatt gctttctttt aattatgttt taagtggcga 7380 taaatgaggt ttgtcctttt cctcgttttg ctttgttgga cacaaaaaga ttttctattt 7440 cttttgtgta ttagaaaacc caaaaaaccc t 7471 //