Dbfetch
ID AB064598; SV 1; linear; genomic DNA; STD; VRL; 3629 BP. XX AC AB064598; XX DT 16-DEC-2001 (Rel. 70, Created) DT 02-NOV-2009 (Rel. 102, Last updated, Version 3) XX DE Torque teno virus 28 DNA, complete genome, isolate: CT43F. XX KW . XX OS Torque teno virus 28 OC Viruses; Anelloviridae; Alphatorquevirus. XX RN [1] RP 1-3629 RA Okamoto H.; RT ; RL Submitted (03-JUL-2001) to the INSDC. RL Contact:Hiroaki Okamoto Jichi Medical School, Immunology Division and RL Division of Molecular Virology; 3311-1 Yakushiji, Minamikawachi-machi, RL Kawachi-gun, Tochigi 329-0498, Japan XX RN [2] RX DOI; 10.1007/s705-002-8301-7. RX PUBMED; 11855633. RA Peng Y.H., Nishizawa T., Takahashi M., Ishikawa T., Yoshikawa A., RA Okamoto H.; RT "Analysis of the entire genomes of thirteen TT virus variants classifiable RT into the fourth and fifth genetic groups, isolated from viremic infants"; RL Arch. Virol. 147(1):21-41(2002). XX DR MD5; ff44a7a470f972aad501fab630d0e6d0. DR EuropePMC; PMC434092; 15220423. XX FH Key Location/Qualifiers FH FT source 1..3629 FT /organism="Torque teno virus 28" FT /isolate="CT43F" FT /mol_type="genomic DNA" FT /country="China" FT /note="originally submitted as 'Torque teno virus'" FT /note="synonym: TT virus" FT /db_xref="taxon:687367" FT CDS join(299..600,2411..2912) FT /codon_start=1 FT /transl_table=1 FT /note="ORF4" FT /db_xref="InterPro:IPR004118" FT /db_xref="UniProtKB/TrEMBL:Q8V7I3" FT /protein_id="BAB79319.1" FT /translation="MSWRPPAYNLAQREEHWYKAILESHSTFCGCSDVVRHFCVLASRL FT ATNPSVIPALPAPPEQQPRPGGDTEGAPGDPGDAGAGRYAEEDLEELFAAAAKDDMRRV FT QKTPNGNPVRGSHRKPRRRRLLFTQSTPKRAREQPVRRRDSPRRGDPKTATTQAAQPAA FT TAAASPQRGTQTSPGRRPPTPERSPLGPPPIIIQGDPIPDLLFPSTGKKRKFSKFDWET FT EAEIGRWLRRPMRFYPSDPPHYPWLPPKRDIPKICKVNFKINFTE" FT CDS join(299..600,2209..2740) FT /codon_start=1 FT /transl_table=1 FT /note="ORF3" FT /db_xref="InterPro:IPR004118" FT /db_xref="InterPro:IPR008474" FT /db_xref="UniProtKB/TrEMBL:Q8V7I2" FT /protein_id="BAB79320.1" FT /translation="MSWRPPAYNLAQREEHWYKAILESHSTFCGCSDVVRHFCVLASRL FT ATNPSVIPALPAPPEQQPRPGGDTEGAPGDPGDAGAGRYAEEDLEELFAAAAKDDIPST FT TLAKNPHTNYPTPINTLQEYKSQIRNTSAHKQSSTPSTSDVDCLARQVLKECQNTNLLM FT TLFQQASGSKDPEWKPSTREPQKTKKKTPTIYSKHSKKSKRAASQKKRQPKKRRSKNSN FT YSSSSTCSDSSSESSERDSNKSWETSSDSGKESTGTPAYNNSRRSNSRPAVSQYW" FT CDS 299..604 FT /codon_start=1 FT /transl_table=1 FT /note="ORF2" FT /db_xref="InterPro:IPR004118" FT /db_xref="UniProtKB/TrEMBL:Q782G0" FT /protein_id="BAB79321.1" FT /translation="MSWRPPAYNLAQREEHWYKAILESHSTFCGCSDVVRHFCVLASRL FT ATNPSVIPALPAPPEQQPRPGGDTEGAPGDPGDAGAGRYAEEDLEELFAAAAKDDM" FT CDS 487..2691 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:487..489,aa:Met) FT /note="ACG for ATG as start codon" FT /note="ORF1" FT /db_xref="GOA:Q8V7I1" FT /db_xref="InterPro:IPR004219" FT /db_xref="InterPro:IPR008928" FT /db_xref="UniProtKB/TrEMBL:Q8V7I1" FT /protein_id="BAB79322.1" FT /translation="MAWWRYRRRPWRPWRRRGWAVRRRRSRRTFRRRGKRRYVSRRPRR FT RYRRRYRRGRRRRGRRRRHRQTIVLRQWQPDVMKKCFITGWLPLIICGSGNTQFNFVTH FT EDDIPPPKASFGGNFTNLTFTLAGLYEQKLLHRNRWSKSNFDLDLARYLYTKIKLYRHP FT TVDYIVTYNRTGPFEINELSYMLTHPLAMLLNKHHIVVPSFKTRPKGKRSKTILIKPPK FT LMINKWYFAKDICKIGLFQIYATGLELTNPWLRSGTKSPIIGIYVLKNSVYNNNLTNLH FT GGGHEEGRKQVFNTLMPETAGKNWQYTYTPLMSKVYHQATKTNNEKLPTPYNWKNYSEN FT YTQVKSKWDSLAQSGYKLVKDEYNAVYTTTATYPPEYTQRNYLSHDYGIYSPYFLTPRR FT YTREWYTAWEYVRYNPLSDKGLGNRIYAQWCSEASSSYSSTKSKCMLQDMPLYMLTYGY FT LDYVVKCTGNKSAWTDMRVCVRCPYTEPPLTGSDSNSGFVLLSESFMNGDMPWPSNFIP FT LKLWFKWFPMMFNQKQAVENIVSCGPFMPRDQEANSWDITIGYKSVFKWGGSPLPPQPI FT DDPCQKSTHELPDPDKYPPRIQIADPEHLGPQTIFHTFDIRRGLFSSASLKRVSEYQPP FT DDPFSTGVGFKRPRMETQYAGATENQEEDAYYLLKALQKEQESSQSEEETAQEEEIQKQ FT QLLKQLNLQRQQQRVLREGLKQVLGDVLRLRKGVHWDPRL" XX SQ Sequence 3629 BP; 1044 A; 1043 C; 833 G; 709 T; 0 other; attttgtgca gcccgccaat ttctctttta aacagaccaa tcacgcacta cttcgtacac 60 ttcctggggt gtgtctaccc agcaaatata agccagaggg gtgacgaatg gtagagtttt 120 ttctgcccgt ccgcggcgag gacgcgagcg aagcgagcgg ccgagcgtcc cgagggcggg 180 tgccggaggt gagtttacac accgaagtca aggggcaatt cgggctcggg actggccggg 240 ctatgggcaa ggctcttaaa aaattccccc gctctgttct ccgccaggac attaaaacat 300 gtcgtggaga ccgccggcat acaaccttgc ccagagagaa gagcactggt acaaagcaat 360 tcttgagtcg cactctactt tttgcggctg ctctgacgtt gttaggcatt tctgtgtcct 420 tgcttctcgc cttgctacaa atccttccgt gatccctgcc ctaccggcac cccctgagca 480 gcaaccacgg cctggtggag atacagaagg cgcccctggc gaccctggag acgccggggc 540 tgggcggtac gcagaagaag atctagaaga acttttcgcc gccgcggcaa aagacgatat 600 gtgagtagaa ggccgcgccg ccgatacagg cgcagataca gacggggcag acgtagaagg 660 ggacgcagac gcaggcacag acagactatt gtactaagac aatggcagcc ggacgttatg 720 aaaaagtgct ttattactgg gtggctacct ctaataatct gtggatctgg aaacacccag 780 tttaactttg tgactcatga ggacgacata ccacctccaa aggcctcctt tggaggaaac 840 tttactaacc tcaccttcac cctagcggga ctatatgaac aaaaactgct ccacagaaac 900 aggtggtcca agtccaactt tgacctagac ctagccagat acctctacac aaaaattaaa 960 ctatacagac accccactgt agactacata gtcacctaca acagaacagg cccattcgag 1020 ataaatgaac tcagctacat gctcacacac cctctcgcca tgctcctaaa caagcaccac 1080 atagtagttc caagctttaa aacaaggccc aaaggaaaga gatccaaaac aatacttatt 1140 aagcctccaa aactcatgat aaacaagtgg tactttgcta aagacatctg caaaataggc 1200 ctcttccaaa tctatgccac aggcctagaa ctcaccaacc catggctcag atcaggcacc 1260 aagagcccca tcataggcat atatgtcctt aaaaactctg tgtataacaa caacttaaca 1320 aacctacatg gagggggcca cgaagaaggc agaaaacaag tttttaacac tctcatgcct 1380 gaaactgcag gcaaaaactg gcaatacaca tacactcctt taatgagcaa agtataccac 1440 caggcaacca aaacaaacaa tgaaaaacta cccacacctt ataactggaa aaactacagt 1500 gaaaactata cacaagtaaa atctaagtgg gactcactag cacaatcagg atacaaacta 1560 gtaaaagatg aatacaatgc agtctataca accactgcca cataccctcc agaatacaca 1620 caaagaaact acctaagtca tgactatggc atttacagcc catacttttt aacaccgcga 1680 agatacacaa gagaatggta cacagcctgg gagtatgtaa gatacaaccc actatcagac 1740 aaaggtctag gtaacagaat ctatgcacag tggtgcagcg aagcatcctc ctcttatagc 1800 tccaccaaaa gcaaatgcat gctacaagac atgccactat acatgctaac atatggctac 1860 ctagactatg tagtaaaatg cacaggcaat aaatcagcct ggacagacat gagagtctgt 1920 gtaagatgtc catacacaga acccccacta acagggtcag acagtaactc cggctttgta 1980 ctattatcag aaagcttcat gaacggagac atgccctggc ccagcaactt cataccgttg 2040 aagttgtggt ttaagtggtt tcctatgatg tttaaccaaa aacaggcagt tgagaacata 2100 gtttcctgtg gccccttcat gcccagagat caggaagcca actcttggga cataaccata 2160 ggttacaagt cagtttttaa atgggggggt tcccctctgc ctccacagcc catcgacgac 2220 ccttgccaaa aatccacaca cgaactaccc gaccccgata aataccctcc aagaatacaa 2280 atcgcagatc cggaacacct cggcccacaa acaatcttcc acaccttcga catcagacgt 2340 ggactgttta gctcggcaag tcttaaaaga gtgtcagaat accaacctcc tgatgaccct 2400 ttttcaacag gcgtcgggtt caaaagaccc cgaatggaaa cccagtacgc gggagccaca 2460 gaaaaccaag aagaagacgc ctactattta ctcaaagcac tccaaaaaga gcaagagagc 2520 agccagtcag aagaagagac agcccaagaa gaggagatcc aaaaacagca actactcaag 2580 cagctcaacc tgcagcgaca gcagcagcga gtcctcagag agggactcaa acaagtcctg 2640 ggagacgtcc tccgactccg gaaaggagtc cactgggacc cccgcctata ataattcaag 2700 gagatccaat tccagacctg ctgtttccca gtactggtaa aaaaagaaaa ttctccaaat 2760 tcgactggga aacggaggcg gagatcgggc gctggctcag gcggcccatg cgcttctatc 2820 cctcagaccc ccctcactac ccgtggctac cccccaagcg agatatccca aaaatatgta 2880 aagtaaactt caaaataaat ttcacagagt aactactcga ggccctcctc tgttcactta 2940 gcggtgtcta cctctaaaag tcaccaagca ctccgagcga agcgaggagt gcgaccctcc 3000 tgcccggtag caacttcctc ggggtccggc gctacgcgct tcgcgctgcg ccggacgcct 3060 cggacccccg ctcgtgctga cacgctcgcg cgtgtcagac cacttcgggc tcgcgggggt 3120 cggggggctt tactaacaga ctccgagtcg ctcttggact ctgggggggc atacagcaac 3180 gaaagtgagt ggggccagac ttcgccataa ggcctttaac ttccgggtgc gtgtgggggc 3240 cgccatttta gcttcgaccg ccattttagg ccctagcggg cctccgtagg cgcgttttaa 3300 tgacgtcaag gcagccattt tgactgtgac gtcaaagtca cgtggggagg gcggcgtgta 3360 acccggaagt catcctcgtc acgtgacctg acgtcacggc cgccattttg tgctgtccgc 3420 catcttgtga cttccttccg ctttttcaaa aaaaaagagg aagtatgacg tagcggcggg 3480 ggggcggcgc gcttcgcgcg ccgcccacta gggggcgctg cgcgcccccc ccccgcgcat 3540 gcgcgggtcc cccccccggg gggggtccgc ccccccggcc cccccccgtg caaagtccac 3600 cgcgcatgcg cgaccacgcc cccgccgcc 3629 //