ID AB056719; SV 1; linear; genomic RNA; STD; VRL; 6435 BP. XX AC AB056719; XX DT 14-JUL-2005 (Rel. 84, Created) DT 15-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Potato virus X genomic RNA, complete genome, strain: bs. XX KW . XX OS Potato virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6435 RA Namba S., Kagiwada S., Yamaji Y., Nakabayashi H.; RT ; RL Submitted (07-MAR-2001) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences, Department of Agricultural and RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi, RL Bunkyo-ku, Tokyo 113-8657, Japan XX RN [2] RX DOI; 10.1016/j.virusres.2004.12.006. RX PUBMED; 15845269. RA Kagiwada S., Yamaji Y., Komatsu K., Takahashi S., Mori T., Hirata H., RA Suzuki M., Ugaki M., Namba S.; RT "A single amino acid residue of RNA-dependent RNA polymerase in the Potato RT virus X genome determines the symptoms in Nicotiana plants"; RL Virus Res. 110(1-2):177-182(2005). XX RN [3] RX DOI; 10.1007/s11262-005-2205-z. RX PUBMED; 15965614. RA Komatsu K., Kagiwada S., Takahashi S., Yamaji Y., Hirata H., Ugaki M., RA Namba S.; RT "Phylogenetic characteristics, genomic heterogeneity and symptomatic RT variation of five closely related Japanese strains of Potato virus X"; RL Virus Genes 31(1):99-105(2005). XX DR MD5; 84769914862f1da512c15bcce4d5089c. DR EuropePMC; PMC5377869; 28466060. DR RFAM; RF00184; PVX_3. XX FH Key Location/Qualifiers FH FT source 1..6435 FT /organism="Potato virus X" FT /strain="bs" FT /mol_type="genomic RNA" FT /db_xref="taxon:12183" FT CDS 85..4455 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:Q4H4H8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q4H4H8" FT /protein_id="BAE07083.1" FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM FT RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSYIVETFQ FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQ FT WLKVGKIKWRDPKDGFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR FT TFGQPDRCVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS FT SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFG FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFNPLQAWKAFRPREVSDVEEMESLFSDGDLL FT DCFTRMPSYAVNAEEDLAAIRKTPEMDVSQEGKEPAGDRNQYSNPAETFLNKLHKKHSR FT EVKHQAVKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSDARQKLMLPIT FT KPVTARWEDASSTDSSLEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE FT IQRDRSGTMIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPATIPLDLLRARDYGS FT DVKNKRIGALTKTQATSWGEYLTGKIESLTERKVATCVIHGAGGSGKSHAIQKALREIG FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALISGTGSIVIFDDYSKLPPGYIE FT ALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD FT LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRKLYMGTGRNDTFTYAGCQGLTK FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV FT REQALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHPESHGHSNC FT VQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV FT TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS FT AWALENWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF FT HRLEDKLLLKSKPVVTQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC FT QDSYEIDLSYAYDHKDSLHELFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL" FT CDS 4486..5166 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB1" FT /product="triple gene block 1" FT /db_xref="GOA:Q4H4H7" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q4H4H7" FT /protein_id="BAE07084.1" FT /translation="MDILIISLKSLGYSRTSKSLDSGPLVVHAVAGAGKSTALRKLILR FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPECNFAILDEYTLDNTTRNSYQALFADPYQA FT PEFSLEPHFYLETSFRVPRRVADLIASCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI FT DEESETTLSRHGVEFVKPCQVTGLEFKVVTIVSAAPIEEIGQSTAFYNAITRSKGLTYV FT RAGT" FT CDS 5147..5494 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB2" FT /product="triple gene block 2" FT /db_xref="GOA:Q4H4H6" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q4H4H6" FT /protein_id="BAE07085.1" FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN FT IHSLPHGGAYRDGTKAILYNSPNLGSQVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNY FT TCACGNNHSSH" FT CDS 5427..5639 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB3" FT /product="triple gene block 3" FT /db_xref="GOA:Q77NQ5" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q77NQ5" FT /protein_id="BAE07086.1" FT /translation="MEANTYLNAIILVLVVTIIAVISTSLVRTEPCVIKITGESITVLA FT CKLDAETIRAIADLKPLSVERLSFH" FT CDS 5650..6363 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q4H4H4" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q4H4H4" FT /protein_id="BAE07087.1" FT /translation="MSAPASTTQATGSTTSTTTKTAGATPATASGLLTIPDGDFFSTAR FT VIVASNAVATNEDLSKIETIWKDMKVPTNTMAQAAWDLVRHCADVGSSAQTEMIDTGPY FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI FT TGTTTAEAVVTLPPP" XX SQ Sequence 6435 BP; 1977 A; 1524 C; 1473 G; 1461 T; 0 other; gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt gttactcacc 60 cgcttggaaa agcaagtcta acaaatggcc aaagtgcgcg aggtttacca atcctttaca 120 gactccacca caaaaactct catccaagat gaggcttata gaaatattcg tcccattatg 180 gaaaaacata aactagctaa cccgtacgct cagacggttg aagcggctaa tgatctagag 240 gggttcggca tagccaccaa tccctatagc attgaattgc atacacatgc agccgccaag 300 accatagaga acaaacttct agaggtgctt ggttccatcc taccacaaga acctgttaca 360 tttatgttcc ttaagcccag gaagctaaac tatatgagaa gaaacccgcg gattaaggac 420 attttccaca atgttgccat tgaaccaaga gacgtagcaa ggtaccccaa ggaaacaata 480 attgacaaac tcacagagat cacaacggac acagcatata ttagtgacac tctgcacttc 540 ttggatccga gctacatagt ggagacattc cagaactgcc caaaattgca aacattgtat 600 gcgaccttag ttctccccgt tgaggcagcc ttcaaaatgg aaagcactca cccgaacata 660 tacagcctca aatacttcgg agatggtttc cagtacatac caggcaacca tggtggtgga 720 gcataccatc atgaatttgc tcatttgcaa tggctcaaag taggaaagat caagtggagg 780 gaccctaagg atggctttct cggacatctc aactacacga ctgagcaggt tgagatgcac 840 acagtgacag tgcagttaca ggaatcattc gcggcaaacc atctgtactg catcagaaga 900 ggggacctgc tcacaccgga ggtacgcact ttcggccaac ctgacaggtg tgtgatccca 960 ccacagatct ttctcccgaa agttcacaac tgcaagaagc cgattcttaa gaaaactatg 1020 atgcagctct tcttgtatgt taggacagtc aaggtcgcaa aaaactgtga catttttgcc 1080 aaagtcagac aattaattaa atcatctgac ttggacaaat attctgctgt ggaactggtt 1140 tacttagtaa gttatatgga gttcctggct gatttacaag ctaccacctg cttctcagac 1200 acactttctg gtggcttgct aacaaagact cttgcacctg tgagggcctg gatacaggag 1260 aaaaagatgc agctgtttgg tcttgaggac tatgcgaagt tagtcaaagc agttgatttc 1320 cacccggtgg atttctcttt taaagtagaa acttgggact ttagattcaa ccccttgcaa 1380 gcgtggaaag ccttccgacc aagggaagtg tcggatgtag aggaaatgga aagtttgttc 1440 tcagatgggg acctgcttga ctgcttcaca agaatgccat cttacgcagt aaacgcagag 1500 gaagatttag ctgcaatcag aaaaacgcct gagatggatg tcagtcaaga aggtaaggaa 1560 cctgcaggag acagaaatca atactcaaac cctgcagaaa ctttcctcaa caagctccac 1620 aagaaacaca gtagggaggt gaaacatcag gccgtaaaga aagctaaacg cctagctgaa 1680 atccaggagt ctatgagagc tgaaggtgag gccgagtcaa atgagatgag cggaggcatg 1740 ggggcaatac ctagcaacgc cgagcttccc agcacgagtg atgcccgaca aaaactcatg 1800 ctcccaatca caaaacctgt tacggcaagg tgggaagatg cttcatccac agattctagt 1860 ctggaagagg agcaagtgaa actccctgga aaagaagccg ttgagacagc aacgcaacag 1920 gtcattgaag gactcccttg gaaacactgg attcctcaac taaatgctgt tggattcaag 1980 gcactggaaa ttcagaggga taggagtgga acaatgatca tgcccatcac agaaatggtc 2040 tccgggttgg aaaaagagga cttcccggaa ggaactccaa aagagttggc acgagaattg 2100 ctcgccatga acagaagccc tgccaccatc cctttggacc tgcttagagc cagagactac 2160 ggcagtgatg taaaaaataa gagaattggc gccctcacaa agacacaagc aacaagctgg 2220 ggcgagtacc taacaggaaa gatagagagc ctgactgaga ggaaagttgc gacttgtgtc 2280 attcatgggg ccggaggctc tgggaaaagt catgccattc agaaggcatt gagagaaatt 2340 ggcaagggct cagatatcac tgtagtcctg ccgaccaatg aactgcgact agattggagt 2400 aagaaagtgc ccaacactga accgtacatg ttcaagacct atgaaaaggc gttaatttcg 2460 ggaacaggca gtatagtcat ctttgacgat tactcaaaac ttcctcccgg ttacatagaa 2520 gccttaatct gtttttactc caagatcaag ctagtcattc taacaggaga tagcagacag 2580 agcgtctacc atgaaactgc tgaggacgcc tccatcaggc atttgggacc agcgacagag 2640 tacttctcaa aatactgccg atactatctc aatgctacac accgcaacaa gaaagacctt 2700 gcgaacatgc ttggtgtcta cagtgagagg acgggagtta ctgaaatcag catgagcgct 2760 gagttcttag aaggaattcc aactttggta ccctcggatg aaaagagaaa gctgtacatg 2820 ggtaccggga ggaatgacac gttcacatac gctggatgcc aggggctaac taagccgaaa 2880 gtacaaatag tgctggacca caacacccaa gtgtgtagcg cgaatgtgat gtacacggca 2940 ctttctagag ccaccgacag aattcacttt gtgaacacaa gtgcaaactc ttcggccttc 3000 tgggaaaagt tagacagcac cccttatctt aagactttcc tatcagtggt gagagaacaa 3060 gcactcaagg agtacgagcc agcagaggca gagccaattc gagagcctga gccccagaca 3120 cacatgtgtg tcgaaaatga ggagtccgtg ctagaagagt acaaagagga actcttggaa 3180 aagtttgaca gagagatcca ccctgaatcc catggccatt caaactgtgt ccaaactgaa 3240 gacacaacca tccagttgtt ctcgcatcaa caagcaaaag atgagaccct cctctgggcg 3300 actatagatg cgcggctcaa gaccagcaat caagagacaa acttccgaga attcttgagc 3360 aagaaagaca ttggggacgt gctgtttttg aactaccaaa aagctatggg tttgcccaaa 3420 gagcgtattc ctttttcaca agaggtttgg gaagcttgtg cccacgaggt acaaagcaag 3480 tacctcagca agtcaaagtg caatttgatc aatgggactg tgagacagag cccagacttt 3540 gatgaaaaca aaattatggt attcctcaag tcgcagtggg tcacaaaggt ggaaaaacta 3600 ggtctaccca agattaagcc aggtcaaacc atagcagctt tctaccagca gactgtgatg 3660 ctttttggaa ctatggctag gtacatgcga tggttcagac aggctttcca gccaaaagaa 3720 gtcttcataa actgtgagac cacgccagaa gacatgtctg catgggcctt ggagaactgg 3780 aatttcagta gacctagctt ggctaatgac tacacagctt tcgaccagtc tcaggatgga 3840 gccatgctgc aatttgaggt gctcaaagct aagcaccact gcataccaga ggagatcatc 3900 caagcataca tagacattaa gaccaacgca cagattttcc taggcacatt gtcaattatg 3960 cgcctgactg gtgaaggtcc cacttttgat gcaaacactg agtgcaacat agcttacacc 4020 cacacaaagt ttgatatccc ggccggaact gctcaagttt atgcaggaga tgactcagca 4080 ctggactgcg ttccagaagt gaagcatagt ttccacaggc ttgaagacaa attactcctc 4140 aagtcaaagc ccgtagtcac gcaacaaaag aaaggcagtt ggcctgagtt ttgtggttgg 4200 ctgattacac caaaaggggt aatgaaagac ccaattaagc tccatgtcag cttaaaattg 4260 gccgaagcta agggcgaact caagaaatgt caagattcct atgaaattga tctgagttat 4320 gcctatgacc acaaggactc tctgcatgaa ctattcgatg agaaacagtg tcaggcacat 4380 acactcactt gcagaacact aatcaagtca gggagaggca ctgtctcact tccccgcctc 4440 agaaactttc tttaaccgtt aagttacctt atagatttga ataagatgga tattctcatc 4500 attagtttga aaagtctagg ttattctagg acttcgaaat ctttagactc aggacctttg 4560 gtagtacatg cagtagccgg agccggcaag tccacagccc taaggaagtt gatcctcaga 4620 cacccaacat tcaccgtgca tacactcggg gtccctgaca aggtgagtat cagaactaga 4680 ggcatacaaa agccaggacc tattcctgag tgcaatttcg caatcctcga tgagtatact 4740 ttggacaaca ccacaaggaa ctcgtaccag gcactttttg ctgaccctta tcaggcacct 4800 gagtttagcc tagagcccca cttctacttg gaaacatcat ttcgagttcc gagaagagtg 4860 gcagatttga tagcaagttg tggtttcgat ttcgagacca actcacagga ggaagggcac 4920 ttagagatca ccggtatatt caaagggccc ctacttggga aggtgatagc cattgacgag 4980 gagtctgaga caacactgtc caggcacggt gttgagtttg ttaagccctg ccaagtgact 5040 ggacttgagt tcaaagtagt cactattgtg tctgccgcac caatagagga aattggccag 5100 tccacagctt tttacaacgc catcaccagg tcaaagggat tgacatatgt ccgcgcaggg 5160 acatagactg accgctccgg tcaattctga aaaagtgtac atagtattag gtctatcatt 5220 tgctttagtt tcaattacct ttttgctttc taggaatagt ctaccccacg tcggtgacaa 5280 cattcacagc ttaccacacg gaggagctta cagagacggc accaaagcaa tcttgtacaa 5340 ctccccaaat ctagggtcac aagtgagtct acacaacgga aagaacgcag catttgctgc 5400 cgttttgcta ctgactttgc tgatctatgg aagcaaatac atatctcaac gcaattatac 5460 ttgtgcttgt ggtaacaatc atagcagtca ttagtacttc cttagtgagg actgaacctt 5520 gtgtcatcaa gattactgga gaatcaatca cagtgttggc ctgcaaatta gatgcagaaa 5580 ctatcagagc cattgccgat ctcaagccac tctccgttga acggttaagt ttccattgat 5640 actcgaaaga tgtcagcacc agccagcaca acacaggcca cagggtcaac tacctcaact 5700 accacgaaaa ctgcaggcgc aactcctgcc acagcttcag gattgctcac catcccggat 5760 ggggatttct ttagtacagc ccgtgtcata gtagctagca atgccgttgc gacaaatgag 5820 gacctcagca agattgagac tatttggaag gacatgaagg tgcctacaaa cactatggcg 5880 caggctgctt gggacttagt cagacactgt gctgatgtgg gctcatctgc tcaaacagaa 5940 atgatagata caggccccta ttccaacggc atcagcagag ctagactggc agcagcgatc 6000 aaagaagtgt gcacacttag gcaattttgc atgaagtatg ccccagtggt gtggaattgg 6060 atgttgacta acaacagtcc acctgctaat tggcaagcac aaggtttcaa gcctgagcac 6120 aaattcgctg cattcgactt cttcaatgga gtcactaacc cagctgccat catgcccaaa 6180 gaggggctca tccggccacc gtctgaagct gaaatgaatg ccgcccaaac tgctgccttt 6240 gtgaagatta cgaaggccag ggcacaatcc aacgactttg ccagcttaga tgcagctgtc 6300 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct tccaccacca 6360 taactacgtc tacataaccg acgcctaccc cagtttcata gtattttctg gtttgattgt 6420 atgaataata taaat 6435 //