ID AB056718; SV 1; linear; genomic RNA; STD; VRL; 6435 BP. XX AC AB056718; XX DT 10-JAN-2002 (Rel. 70, Created) DT 15-DEC-2007 (Rel. 94, Last updated, Version 4) XX DE Potato virus X genomic RNA, complete genome, strain: os. XX KW . XX OS Potato virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6435 RA Namba S., Kagiwada S., Yamaji Y., Nakabayashi H.; RT ; RL Submitted (07-MAR-2001) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences, Department of Agricultural and RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi, RL Bunkyo-ku, Tokyo 113-8657, Japan XX RN [2] RA Kagiwada S., Yamaji Y., Nakabayashi H., Ugaki M., Namba S.; RT "The complete nucleotide sequence of Potato virus X strain OS: the first RT complete sequence of a Japanese isolate"; RL J. Gen. Plant Pathol. 68:94-98(2002). XX RN [3] RX DOI; 10.1016/j.virusres.2004.12.006. RX PUBMED; 15845269. RA Kagiwada S., Yamaji Y., Komatsu K., Takahashi S., Mori T., Hirata H., RA Suzuki M., Ugaki M., Namba S.; RT "A single amino acid residue of RNA-dependent RNA polymerase in the Potato RT virus X genome determines the symptoms in Nicotiana plants"; RL Virus Res. 110(1-2):177-182(2005). XX DR MD5; 0c3e8a5218a57530199ed5e8ad41433b. DR EuropePMC; PMC4188192; 25674601. DR EuropePMC; PMC5377869; 28466060. DR RFAM; RF00184; PVX_3. XX FH Key Location/Qualifiers FH FT source 1..6435 FT /organism="Potato virus X" FT /strain="os" FT /mol_type="genomic RNA" FT /db_xref="taxon:12183" FT CDS 85..4455 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:Q8V967" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8V967" FT /protein_id="BAB83122.1" FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM FT RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSYIVETFQ FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQ FT WLKVGKIKWRDPKDGFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR FT TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS FT SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFG FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDLL FT DCFTRMPSYAVNAEEDLAAIRKTPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHRKHSR FT EVKHQAVKKAKRLAEIQESMRAEGEAGSNEMSGGMGAIPSNAELPSTSDARQELILPVN FT KPVPARWEDASLTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE FT IQRDRSGTIIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPATIPLDLLRARDYGS FT DVKNKRIGAITKTQATSWGEYLTGKIESLNERKVATCVIHGAGGSGKSHAIQKALREIG FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIE FT ALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD FT LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTK FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV FT REQALKEYEPAEAEPIREPEPQTHMRVENEESVLEEYKEELLEKFDREIHSESHGHSNC FT VQTENTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV FT TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS FT AWALNNWDFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF FT HRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC FT QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL" FT CDS 4486..5166 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB1" FT /product="triple gene block 1" FT /db_xref="GOA:Q8V966" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q8V966" FT /protein_id="BAB83123.1" FT /translation="MDILIISLKSLGYSRTSKSLDSGPLVVHAVAGAGKSTALRKLILR FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRNSYQALFADPYQA FT PEFSLEPHFYLETSFRVPKKVADLIASCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI FT DEEAETTLSRHSVEFVKPCQVTGLEFKVVTIVSAAPIEEIGQSTAFYNAITRSKGLTYV FT RAGT" FT CDS 5147..5494 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB2" FT /product="triple gene block 2" FT /db_xref="GOA:Q77RX1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q77RX1" FT /protein_id="BAB83124.1" FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN FT IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNH FT TCACGNNHSSH" FT CDS 5427..5639 FT /codon_start=1 FT /transl_table=1 FT /gene="TGB3" FT /product="triple gene block 3" FT /db_xref="GOA:Q85247" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q85247" FT /protein_id="BAB83125.1" FT /translation="MEVNTYLNAIILVLVVTIIAVISTSLVRTEPCVIKITGESITVLA FT CKLDAETIRAIADLKPLSVERLSFH" FT CDS 5650..6363 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q8V965" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8V965" FT /protein_id="BAB83126.1" FT /translation="MSAPASTTQATGSTTSTTTKTAGVTPATTSGLFTIPDGDFFSTAR FT AIVASNAVATNEDLSKIEAIWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI FT TGTTTAEAVVTLPPP" XX SQ Sequence 6435 BP; 1979 A; 1508 C; 1476 G; 1472 T; 0 other; gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt gttacacacc 60 cgcttgaaaa agaaagtcta acaaatggcc aaagtgcgcg aggtttatca atcctttaca 120 gactccacca caaaaactct catccaagat gaggcttata gaaatattcg tcccatcatg 180 gaaaaacata aactagctaa cccgtacgct caaacagttg aagcggctaa tgatctagag 240 gggttcggca tagccactaa tccctatagc attgaattgc atacacatgc agccgctaag 300 actatagaga ataaacttct agaggtgctt ggttccatcc taccacaaga acctgttaca 360 tttatgttcc ttaagcccag gaagctaaac tatatgagaa gaaacccgcg gattaaggac 420 attttccaca atgttgctat tgaaccaaga gacgtagcaa ggtaccccaa ggaaacaata 480 attgacaaac tcacagagat cacaacggac acagcatata ttagtgacac tctgcacttc 540 ttggatccga gttacatagt ggagacattc cagaactgcc caaaattgca aacattgtat 600 gcgaccttag ttctccccgt tgaggcagcc tttaaaatgg aaagcactca cccaaacata 660 tacagcctca aatacttcgg agatggtttc cagtatatac caggcaacca tggtggtgga 720 gcataccatc atgaatttgc tcatttacaa tggctcaaag tgggaaagat caagtggagg 780 gaccccaagg atggctttct cggacatctc aattacacga ctgagcaggt tgagatgcac 840 acagtgacag tgcagttgca ggaatcgttc gcggcaaacc atttgtactg catcagaaga 900 ggggacttgc tcacaccgga ggtgcgcact ttcggccaac ctgacaggta tgtgattcca 960 ccacagatct ttctcccgaa agttcacaac tgcaagaagc cgattcttaa gaaaactatg 1020 atgcagctct tcttgtatgt taggacagtc aaagtcgcaa aaaattgtga catttttgcc 1080 aaagtcagac aattaattaa atcatctgac ttggacaaat attctgccgt ggaactggtt 1140 tacctagtaa gctatatgga gttcctggct gatttacaag ctaccacctg cttctcagac 1200 acactttctg gtggcttgct aacaaagacc cttgcaccgg taagagcttg gatacaagag 1260 aaaaagatgc agctgtttgg tcttgaggac tacgcgaagt tagtcaaagc agttgatttc 1320 cacccggtgg atttctcttt caaagtggaa acttgggact tcagattcca ccccttgcaa 1380 gcgtggaaag ctttccgacc aagggaagtg tcggatgtag aggaaatgga gagtttgttc 1440 tcagatgggg acctgcttga ttgcttcaca agaatgccat cttacgcagt aaacgcagag 1500 gaagatttag ctgcaataag gaaaacgcct gagatggatg tcggccaaga agttaaagaa 1560 cctgcaggag acaggaatca atactcaaac cctgcagaaa ctttcctcaa caagctccac 1620 aggaaacaca gtagggaggt gaaacatcag gccgtaaaga aagctaaacg cctagctgaa 1680 atccaggagt ccatgagagc tgaaggtgag gccgggtcga atgagatgag cggaggcatg 1740 ggggcaatac ctagcaacgc cgaacttcct agcacgagtg atgcccgaca agaactcata 1800 ctcccagtca acaaacctgt ccctgcaagg tgggaagatg cttcattaac agattctagt 1860 gtggaagagg agcaggtgaa actccccgga aaagaagccg ttgagacagc aacacaacaa 1920 gtcatcgaag gactcccctg gaaacactgg atccctcaac taaatgctgt tggattcaag 1980 gcactggaaa ttcaaaggga tagaagtgga acaataatca tgcccatcac agaaatggtc 2040 tccgggttgg aaaaagagga cttcccggaa ggaactccaa aagagttggc acgagaattg 2100 ctcgccatga acagaagccc tgccaccatc cctttggacc tgcttagagc cagagactac 2160 ggcagtgacg tgaagaataa gagaattggt gccatcacaa agacacaagc aacaagctgg 2220 ggcgagtacc taacaggaaa gatagagagc ctgaatgaga ggaaagttgc gacttgtgtc 2280 attcatggag ctggaggctc tgggaaaagt catgccattc agaaggcatt gagagaaatt 2340 ggcaagggct cagacatcac tgtagttctg ccgaccaatg aactgcgact agattggagt 2400 aagaaggtgc ccaacactga accgtacatg ttcaagacct atgaaaaggc gttaattggg 2460 ggaacaggca gtatagtcat cttcgacgat tactcaaaac ttcctcccgg ttacatagaa 2520 gccttaatct gtttttactc caagatcaag ctagtcattc taacaggaga tagcagacag 2580 agcgtctacc atgagactgc agaggacgcc tctattaggc atttgggacc agcgacagag 2640 tacttctcaa aatactgccg atactatctc aatgctacac accgcaacaa gaaagacctt 2700 gcgaacatgc ttggtgtcta cagtgagagg acgggagtta ccgaaatcag catgagcgcc 2760 gagttcttag aaggaatccc aactttggta ccttcggatg aaaagagaag gctgtacatg 2820 ggtaccggga ggaatgacac gttcacatac gctggatgcc aggggctaac taagccgaaa 2880 gtacaaatag tgctggacca caacacccaa gtgtgtagcg cgaatgtgat gtacacggca 2940 ctttctagag ccaccgacag gattcacttc gtgaacacaa gtgcaaactc ttcagccttc 3000 tgggaaaagt tagacagcac cccttatctc aagactttcc tatcagtggt gagagaacaa 3060 gcactcaagg agtacgagcc ggcagaggca gagccaattc gagagcctga gccccagaca 3120 cacatgcgtg tcgaaaatga ggagtccgtg ctagaagagt acaaagagga actcctggag 3180 aagtttgaca gagagatcca ctctgaatcc catggccatt caaactgtgt ccaaactgaa 3240 aacacaacta ttcagttgtt ctcgcatcag caagcaaaag atgagaccct cctctgggcg 3300 accatagatg cgcggctcaa gaccagcaat caagagacaa atttccgaga attcttgagc 3360 aagaaggaca ttggggacgt tctgtttttg aactaccaaa aagctatggg tttgcccaaa 3420 gagcgtattc ctttttcaca agaggtctgg gaagcttgtg cccatgaggt acaaagtaag 3480 tacctcagta agtcgaagtg caacttgatc aatgggactg tgagacagag cccagacttt 3540 gatgaaaaca aaattatggt attcctcaag tcgcagtggg tcacgaaggt ggaaaaacta 3600 ggtctaccca agattaagcc gggccaaacc atagcagctt tctatcagca gactgtgatg 3660 ctttttggaa ctatggctag gtacatgcga tggttcagac aggcttttca gccaaaagaa 3720 gtcttcataa actgtgagac cacgccagaa gacatgtctg catgggcctt gaacaactgg 3780 gatttcagta gacctagctt ggctaatgac tacacagcct tcgaccagtc tcaggatgga 3840 gctatgttgc aatttgaggt gctcaaagct aagcaccact gcataccaga ggaaattatc 3900 caagcataca tagacattaa gaccaatgca cagattttcc taggcacatt gtcaattatg 3960 cgcctgactg gtgaaggtcc cacctttgat gcaaacactg agtgcaacat agcttacacc 4020 catacaaagt ttgacatccc ggccggaact gctcaagttt atgcaggaga cgactcagca 4080 ttggactgtg ttccagaagt gaagcatagt ttccacaggc ttgaagacaa attactcctc 4140 aagtcgaagc ctgtaatcac gcaacaaaag aaaggcagtt ggcctgagtt ttgtggttgg 4200 ctgattacac caaaaggggt aatgaaagac ccaattaagc tccatgttag cttaaaattg 4260 gccgaagcta agggtgaact caagaaatgt caagattcct atgaaattga tctgagttat 4320 gcctatgacc acaaggactc tctacatgac ctgttcgatg agaaacagtg tcaggcacat 4380 acactcactt gcaggacact aatcaagtca gggagaggca ctgtctcact tccccgcctc 4440 agaaactttc tttaaccgtt aagttacctt atagatttga ataagatgga tattctcatc 4500 attagtttga aaagtttagg ttattctagg acttctaaat ctttagactc aggaccttta 4560 gtagtacatg cagtagctgg agccggtaag tccacagccc taaggaagtt gatcctcaga 4620 cacccaacat tcaccgtgca tacactcggg gtccctgaca aggtgagtat cagaactaga 4680 ggcatacaga agccaggacc tattcctgag ggcaatttcg caatccttga tgagtatact 4740 ttggacaaca ccacaagaaa ctcataccag gcactttttg ctgaccctta tcaggcacct 4800 gagtttagcc tagagcccca cttctacttg gaaacatcat ttcgagttcc gaagaaagtg 4860 gcagatttga tagcaagttg tggtttcgat ttcgagacca actcacagga ggaagggcac 4920 ttagagatca ctggcatatt caaagggccc ctacttggga aggtgatagc cattgacgag 4980 gaggctgaga caacgctgtc caggcatagt gttgagtttg ttaagccctg ccaagtgact 5040 ggacttgagt tcaaagtagt cactattgtg tctgccgcac caatagagga aattggccag 5100 tccacagctt tctacaacgc catcaccagg tcaaagggat tgacatatgt ccgcgcaggg 5160 acatagactg accgctccgg tcaattctga aaaagtgtac atagtattag gtctatcatt 5220 tgctttagtt tcaattacct ttctgctttc tagaaatagt ttaccccacg tcggtgacaa 5280 cattcacagc ttaccacacg gaggagccta cagagacggc accaaagcaa tcttgtacaa 5340 ctccccaaat ctagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc 5400 cgttttgcta ctgactttgc tgatctatgg aagtaaatac atatctcaac gcaatcatac 5460 ttgtgcttgt ggtaacaatc atagcagtca ttagtacttc cttagtgagg actgaacctt 5520 gtgtcatcaa gattactgga gaatcaatca cagtgttggc ctgcaaatta gacgcagaaa 5580 ctatcagagc cattgccgat ctcaagccac tctccgttga acggttaagt ttccattgat 5640 actcgaaaga tgtcagcacc agctagcaca acacaggcca cggggtcaac tacctcaact 5700 accacgaaaa ctgcaggcgt aactcctgcc acaacttcag gactgtttac catcccggat 5760 ggagatttct ttagtacagc ccgtgccata gtagccagca atgcagttgc aacaaatgag 5820 gacctcagca agattgaggc tatttggaag gacatgaagg tgcctacaga cactatggca 5880 caggctgctt gggacttagt cagacactgt gctgatgtgg gctcatctgc tcaaacagaa 5940 atgatagata caggtcccta ttctaacggc atcagcagag ctagactggc tgcagcaatc 6000 aaagaggtgt gcacacttag gcaattttgc atgaagtatg ccccagtggt atggaactgg 6060 atgttgacca acaacagtcc acctgctaac tggcaagcac aaggtttcaa gcctgagcac 6120 aaattcgctg cattcgactt cttcaatgga gtcactaacc cagctgccat catgcccaaa 6180 gaggggctca tccggccacc gtctgaagct gaaatgaatg ctgcccaaac tgctgccttt 6240 gtgaagatta cgaaggccag ggcacaatcc aacgacttcg ccagcttaga tgcagctgtc 6300 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct tccaccacca 6360 taactacgtc tacataaccg acgcctaccc cagtttcata gtattttctg gtttgattgt 6420 atgaataata taaat 6435 //