ID AB054689; SV 1; linear; genomic RNA; STD; VRL; 3354 BP. XX AC AB054689; XX DT 25-JUL-2001 (Rel. 68, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Squash mosaic virus RNA2, nearly complete sequence. XX KW . XX OS Squash mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-3354 RA Iwanami T.; RT ; RL Submitted (19-JAN-2001) to the INSDC. RL Toru Iwanami, National Institute of Fruit Tree Science; Fujimoto 2-1, RL Tsukuba, Ibaraki 305-8605, Japan (E-mail:tiwsw37@fruit.affrc.go.jp, RL Tel:81-298-38-6546, Fax:81-298-38-6546) XX RN [2] RX DOI; 10.1007/s705-002-8332-5. RX PUBMED; 11890535. RA Han S.S., Yoshida Y., Karasev A.V., Iwanami T.; RT "Nucleotide sequence of a Japanese isolate of Squash mosaic virus. Brief RT report"; RL Arch. Virol. 147(2):437-443(2002). XX DR MD5; 5e6b64d9479326ba0d9a700004b2eb9d. XX FH Key Location/Qualifiers FH FT source 1..3354 FT /organism="Squash mosaic virus" FT /segment="2" FT /isolate="Y-SqMV" FT /mol_type="genomic RNA" FT /country="Japan:Hokkaido, Yubari" FT /note="about ten nucleotides in RNA2 5' end are not FT included" FT /db_xref="taxon:12263" FT CDS 201..3230 FT /codon_start=1 FT /transl_table=1 FT /product="polyprotein" FT /note="MP, LCP, SCP" FT /note="polyprotein including movement protein and capsid FT proteins" FT /db_xref="GOA:Q91PR5" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91PR5" FT /protein_id="BAB62140.1" FT /translation="MWHFCEQVYECFEGYHKDYSVQTVPVEYLASHYIVNKFRPDPLAV FT LWLFCLGIWWEIIQILHYLFQYKEPALFISSCQNLAAFLERKYSMEVIQKEGLAASALK FT DKERLAEKAVVNQPLSNLIPNSNKMYERSKSLLSGLKRGLIKQKEIAFDKLMGGSTIDF FT QHIPTGTLTPGENKVLDIPIVPQHLLTSTNITDYHQANKKNANGATALHVGAIEVIMDC FT FTSPDSNICGGMLLVDTAHLNPDNAIRSVFVAPFIGGRPIRVLLFPDTLVEIAPNMNSR FT FKLLCTTSNGDVAPDFNLAMVKVNVAGCAVSLTKTYTPTAYLEQELIKEKGAIVQYLNR FT HTFSMHRNNQMTKEEMQKQRLSFRLESALTLQEKHPLHATFCKSTNFVYKIGGDAKEGS FT NGNLTVNESQLSSHSPSAHVLHKHNNSGDNEVEFSEIGVVVPGAGRTKAYGQNELDLAQ FT LSLDDTSSLRGSALQTKLATSRVILSKTMVGNTVLREDLLATFLQDSNERAAIDLIRTH FT VIRGKIRCVASINVPENTGCALAICFNSGITGAADTDIYTTSSQDAIVWNPACEKAVEL FT SFNPNPCGDAWNFVFLQQTKAHFAIQCVTGWTTTPLTDLALVLTWHIDRSLCVPKILTI FT SSAHASFPINRWMGKLSFPQGPARVLKRMPLAIGGGAGTKDAILMNMPNAVISLHRYFR FT GDFVFEITKMSSPYIKATIAFFIAFGDITEEMTNLESFPHKLVQFAEIQGRTTITFTQS FT EFLTAWSTQVLSTVNPQKDGCPHLYALLHDSATSTIEGNFVIGVKLLDIRNYRAYGHNP FT GFEGARLLGISGQSTMVQQLGTYNPIWMVRTPLESTAQQNFASFTADLMESTISGDSTG FT NWNITVYPSPIANLLKVAAWKKGTIRFQLICRGAAVKQSDWAASARIDLINNLSNKALP FT ARSWYITKPRGGDIEFDLEIAGPNNGFEMANSSWAFQTTWYLEIAIDNPKQFTPFELNA FT CLMEDFEVAGNTLNPPILLS" XX SQ Sequence 3354 BP; 904 A; 677 C; 732 G; 1041 T; 0 other; tgtaaagttt gagagagttt aataccgtct cttgatcaaa gatcccacca aagtgtctta 60 aagtgatctc tgctccctct cgcactttac ggctcggtag actgtgctaa gagtttctcc 120 ctctttcttt ttcttcctca accattctaa agtttctcag ccaaatgtat gcatttgctt 180 aattcaacta atttgcattc atgtggcatt tctgtgaaca agtttatgag tgttttgagg 240 gttaccataa agactactct gttcaaacag tccctgtgga atatttggcc tcacattaca 300 ttgtcaacaa gtttagaccc gaccctttag ctgttttgtg gcttttctgt ttgggaattt 360 ggtgggagat tattcaaata ctccactatc tatttcagta taaagaacca gcacttttta 420 ttagcagctg tcagaacctt gctgcttttt tagagagaaa gtattccatg gaagtgattc 480 aaaaggaagg tttggctgct tcggcactca aagacaagga gcgattggcc gaaaaagctg 540 tggtcaatca acccctgagt aatttaattc ccaactcaaa taaaatgtat gagcgaagta 600 agagtctcct atctggtctt aagcgtggtt tgataaagca aaaagagata gcttttgaca 660 agcttatggg aggctcaaca atagatttcc aacatattcc aacaggaact ctcacacctg 720 gtgagaacaa agtgctagac ataccaattg ttccgcaaca tttattgacc agtacaaata 780 taacagatta ccatcaagct aacaagaaaa atgctaatgg tgctactgca cttcatgttg 840 gggctataga ggtcattatg gattgcttca cctctcctga tagcaatatt tgtggtggta 900 tgttgctggt tgatacagca catttaaatc cagataatgc tataagaagt gtgtttgttg 960 caccatttat aggtggtcgt cctattcgag ttttgttatt tccagatacc ttggtggaaa 1020 ttgccccgaa catgaattct cgattcaaat tgctatgtac tacgagcaat ggcgatgttg 1080 caccagattt caatttagcg atggttaaag tcaatgttgc aggttgcgct gttagtttga 1140 ctaagacata tactcctaca gcttacctcg agcaagaatt gatcaaagaa aagggggcca 1200 ttgtccaata cttaaacagg cacaccttct ctatgcatcg gaacaaccag atgacaaagg 1260 aagagatgca aaagcagcgc ctctctttta gattggaaag tgctctcact ttgcaggaaa 1320 agcatccttt gcatgccact ttttgcaagt caactaattt tgtttacaag attggtggag 1380 atgcaaaaga aggcagcaat ggcaatttga ctgtcaatga gagccagttg tcctcacatt 1440 ctccttctgc acatgtcttg cacaagcaca ataacagtgg tgataatgaa gtagagtttt 1500 cggaaattgg tgtagttgtg ccaggtgctg gcagaactaa ggcttatggc caaaatgagc 1560 tagatcttgc gcaactttct ttggatgata ctagttccct tcgtggatct gcgttgcaaa 1620 ctaaattggc cacttcccgt gtcattctga gcaagacaat ggttggaaat actgtgctca 1680 gggaggattt gctcgccacc tttttgcaag atagcaatga gagggccgct atagatttga 1740 ttcgcaccca tgtcatcaga ggcaaaatac gctgtgttgc ttctataaat gttccagaga 1800 atacaggttg tgcattagct atctgtttca acagtggcat aacaggagca gcagacacag 1860 atatttatac cacaagttct caggatgcca ttgtgtggaa tcctgcttgt gagaaagctg 1920 ttgagttgtc attcaacccc aatccttgtg gtgatgcttg gaattttgtc tttctgcaac 1980 aaacgaaggc acattttgcc attcagtgcg tgaccgggtg gactacaaca ccgcttacag 2040 atttagcgct ggtgcttaca tggcacattg atagaagctt gtgtgtgcct aaaattctga 2100 cgattagttc tgcacatgct tcttttccaa ttaatcgctg gatgggaaag ttatcttttc 2160 cgcaagggcc tgcgcgtgtt cttaagagga tgcctttggc tattggtgga ggggctggta 2220 ccaaagacgc tattctgatg aatatgccaa acgctgttat ctcacttcac cgatatttta 2280 ggggagattt cgtctttgag ataacaaaga tgagttctcc ttatataaag gcaaccattg 2340 ctttctttat agcgtttggt gatattacag aggaaatgac taatctggag agtttccccc 2400 acaagctcgt gcagtttgct gaaattcagg ggcgtaccac tataacgttc acgcaaagcg 2460 aatttttgac ggcatggtct acacaggtat taagtactgt caatcctcag aaggatgggt 2520 gtccccactt gtacgcactt ttgcatgact ctgctacttc aactattgaa ggaaattttg 2580 tcattggtgt taaattgctg gacatcagaa actatcgtgc ttacggtcac aaccccggtt 2640 ttgagggggc tcgtttgcta ggaatttctg ggcagagtac catggtacag cagcttggaa 2700 cttataatcc aatttggatg gttcgcacgc ccttagaaag tacagcccaa caaaattttg 2760 cgagtttcac tgctgatttg atggaatcca cgataagtgg ggactctact ggaaactgga 2820 atatcacagt ttatcctagt cctatagcta atttgctgaa agtggctgct tggaagaaag 2880 gaactataag atttcaactt atttgtcggg gtgccgctgt caagcagtct gactgggctg 2940 cgtcagctag aatagacttg attaacaacc tctcgaacaa ggctctaccc gcgcgttcct 3000 ggtacattac aaagccacga ggaggcgaca tcgagtttga cttagagata gcgggaccaa 3060 ataatggttt tgaaatggcg aattccagtt gggctttcca gaccacatgg tacttggaaa 3120 ttgccataga taatcccaag caatttactc cttttgaatt aaatgcctgt cttatggaag 3180 attttgaagt ggctggaaat actttaaatc cacctatttt gctttcctag ttttttcgtt 3240 ctttgtttcc ttcttttctg ggttttgttg tggcttcttt cccagttcgc tttagaagcc 3300 tctctttgta aatcttaaga gcttgttttc tttgatgcat tctcttttct tttt 3354 //