ID AB054688; SV 1; linear; genomic RNA; STD; VRL; 5865 BP. XX AC AB054688; XX DT 25-JUL-2001 (Rel. 68, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 4) XX DE Squash mosaic virus RNA1, complete sequence. XX KW . XX OS Squash mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-5865 RA Iwanami T.; RT ; RL Submitted (19-JAN-2001) to the INSDC. RL Toru Iwanami, National Institute of Fruit Tree Science; Fujimoto 2-1, RL Tsukuba, Ibaraki 305-8605, Japan (E-mail:tiwsw37@fruit.affrc.go.jp, RL Tel:81-298-38-6546, Fax:81-298-38-6546) XX RN [2] RX DOI; 10.1007/s705-002-8332-5. RX PUBMED; 11890535. RA Han S.S., Yoshida Y., Karasev A.V., Iwanami T.; RT "Nucleotide sequence of a Japanese isolate of Squash mosaic virus. Brief RT report"; RL Arch. Virol. 147(2):437-443(2002). XX DR MD5; f17625f0f866e3db9a9db201026b37df. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..5865 FT /organism="Squash mosaic virus" FT /segment="1" FT /isolate="Y-SqMV" FT /mol_type="genomic RNA" FT /country="Japan:Hokkaido, Yubari" FT /db_xref="taxon:12263" FT CDS 236..5812 FT /codon_start=1 FT /transl_table=1 FT /product="polyprotein" FT /note="32K, 58K, VPg, 24K protease, 87KRdRp" FT /note="polyprotein including 32K, 58K helicase, VPg, 24K FT protease, 87K RNA-dependent RNA polymerase" FT /db_xref="GOA:Q91PR6" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q91PR6" FT /protein_id="BAB62139.1" FT /translation="MNFTGNGSVASVHQVVHSEDVMFYLKAYTNMTTDNKGATLPRIVA FT TLKEEQNRHVLYLSFYAYCLDFDAGLMEPHSVDVEDFVFEQFHDFVTAMLKGCHSLMPL FT RSYTKAILAERLQLAVNFVPEITTELGGSGPVEAQMQGLRNIAANMLMWIPKRIGAIAA FT WTVESIIGSFKEHFLKMINTHCPIVLSTFPWILKIWDRVTEWLTMAADDFAWLLASTKE FT LMTWGMAIMALTTAMSLLDKLLMAVGAITEPMNLSDIFLRTGVVAACCYELTKQSGNCG FT AQLISLFSGVANVVAGVLSAKFQNQPQTILQDSPIGLLETLAERLTSLCDVSLINLGKT FT CAAINQIATCANTIKGFVAKIFCTLTHYVWEALGIKTSFLRDATFVLGEDVDGWLQQIS FT QCQNDFIVHASCSQDEFLKLQVLAEKGNNMRNKILQGVRLSPGIISLVTSGIVMLDKLR FT REACLQGNRTERKMPFTIFCQGTSRVGKTLLTSRIVKDFQAALGLAEDTVYSRNPAESY FT WSGYRRQPFVLIDDFGAVKTEPSCEAQLIPLVSSTPYPVPMAAIEEKGMMFDSQFIVCS FT TNFLEPSPEAKIRDDAPFRNRRHVLINVKIDNERQYDSSDFTQNQIYEIMRYERETYVV FT EQRFTSYADLFVFLQNKYEAHNAEQSANIGSVVPYKGKQNLLILRGLLNLANVSNAGLL FT KAQAKKLGQPEGFREYTHLFTIQHKNRFAHLGFADAYDSVIWYGEHSDVGRSEEMAKMT FT ASHVMKAYKILIQGENLSLLIKNHLRYLVCPDNYDRDFNFTGGVGDTLLEQQLLPDMQA FT LHTWERFVLCAMGYYMETQKMQPWYKTVTEKVFENLKAAYSREFSSWPTPLKAIVGIVL FT AALVGKGFWFAYKALTEGGNGSSLVGAASVVLTSTTNAVAQSRKPNRFDVAQYRYRNVP FT LKRRQWADAQMSLDHSSVAIMSKCKANFEFGNTNVQIVLVPGRRFLGYAHFFKTIKHPI FT TVKIVKDGRHFLHVYDPKGMTYFDDSEICVYHSASFEDIPHTTWDVFCWDWEKSLCKKF FT PADFLSCKYDRLTMSYEPTYAGINVETVFETLELRANGAVRKLPCFLKYEAPTVDRDCG FT SLIVAQVEGRYQIVGIHIGGDGRNGFAAPLPHIPQAADAQCTTKYFSFYPNEQEEETGV FT ALVGQLKPEVWIPLPTKTSLVETEEEWHLDTKSDKVPSILSSEDPRIKQGGNEGYDPFR FT GGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEPDENFDDVDLEVAINGIDGLDYMDR FT IPLATSEGFPHILSREKGEKGKGRFVETVGGKCALIEGTSVYHAFEILQEQCKKEVPTL FT IGIECPKDEKLPLRKIYDTPKTRCFTILPMEYNLLVRMKFLKFVRFIMRNREKLACQVG FT INPYSMEWTRLAGSLLSVGQNILCCDYKSFDGLLSKQVMTVIATMINRLCGGSQESQTM FT RMNLLMACCSRYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVP FT RPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTL FT EFRKLSNCDFLKRGFKLNGLIYDSPEEKSSLWAQLHYVNTTNLDKQEAYLVNLNNVLKE FT LYMYSPEEMNMLRRKALQLPWINKDDVLNGAQIKEFFAYQRQQLLPDNEDSLDMMLKPD FT LLGSLVPDVVLLDKGVQVSGRLKTINLKYTELGEKRDNEFWVIFNGHFPTNRLPEHCLN FT IKWEAGTGRGNLPTQSWISNNISRPNSEYNRKIRTAYAAGKVLCFCAWGDMIPVSIMLL FT LSSARNNWIPKGQTNEALTSFMEYAKSLKFLPRECEYAFTDVK" XX SQ Sequence 5865 BP; 1576 A; 1095 C; 1413 G; 1781 T; 0 other; tattaaaaat ttctggagaa gaaactttta ataaccatct tcaaggaatc gcgggattcc 60 caccaaagca atctttaaag caatctttaa acattttctg ttttccagct ttgcacttta 120 cggccctgtg gtagattgtg caattgcttt tctccctcct ttcttttctt ttccctcctt 180 cactttccta ctttcaagtg tttttgtttt gtttgtgtga ttaaattaat tcaaaatgaa 240 tttcactgga aatgggagtg ttgctagcgt ccaccaagta gtccattctg aggatgttat 300 gttttatctg aaagcatata ccaatatgac aactgacaac aagggcgcca ctctaccccg 360 tattgtggcg acgttgaagg aggagcaaaa caggcatgtt ttgtatttat ccttttatgc 420 ctattgcttg gattttgatg ctgggttgat ggaaccccac tctgttgacg ttgaggactt 480 tgtttttgag caatttcatg attttgtaac tgccatgctt aaggggtgtc atagccttat 540 gccactgaga tcttatacaa aagctatttt ggccgagcgt ttgcaattag cagtgaattt 600 tgttcctgaa atcactactg agcttggggg ttctggtcct gtggaagccc aaatgcaagg 660 gctgcgaaac attgcagcta acatgttgat gtggatacct aagagaattg gtgctatagc 720 tgcatggaca gtggagagta ttattggaag ttttaaggaa cattttctga agatgattaa 780 tactcattgt ccaatagttt tgtcgacgtt tccctggatt cttaaaatct gggatcgtgt 840 gacagagtgg ttgacaatgg cagctgatga ttttgcgtgg cttttggcct ccaccaagga 900 attgatgaca tggggcatgg ccatcatggc cttaactaca gccatgagtc ttttggataa 960 attgttgatg gcggttggtg ccattactga gcccatgaac ttgtctgata ttttcttgcg 1020 caccggagtt gttgccgcat gttgttatga gctgacaaaa cagagcggca attgtggagc 1080 ccagctgatc tctcttttta gtggtgttgc taatgttgtt gcgggggttt tgagcgcaaa 1140 atttcaaaat cagccccaga ccattttgca agactcccct ataggtttac tggaaacact 1200 cgcggagagg ttaacgagtt tgtgtgatgt ctccttgata aatttgggca aaacgtgtgc 1260 cgcaataaac caaattgcga catgtgctaa cacaattaag ggttttgttg caaagatttt 1320 ttgtactttg acgcattacg tctgggaagc tttgggtatc aaaacctctt ttttgcgaga 1380 cgccactttt gttcttggtg aggatgttga tggctggttg cagcaaatct cccagtgcca 1440 gaatgacttt attgtacatg cctcttgttc tcaggacgag tttcttaagt tgcaggtctt 1500 ggccgaaaaa ggcaataaca tgcgaaataa gatcctccaa ggagtccgcc tttccccagg 1560 tatcataagt ttggttacct caggtattgt gatgttagat aagctccgtc gtgaggcttg 1620 tcttcagggc aacagaaccg agaggaaaat gccttttacc attttttgcc aaggaacttc 1680 tcgcgttgga aaaacattat tgacttctag aattgtcaaa gatttccagg cagccctagg 1740 gttggctgag gacactgtgt acagcaggaa cccggcagaa agttactgga gtgggtatcg 1800 tcgtcagcct tttgttctga ttgatgattt tggtgcagtt aaaactgagc cctcatgtga 1860 ggctcaattg atccctttgg tttcttctac tccttatcct gttccaatgg cggccattga 1920 agaaaaggga atgatgtttg attcacagtt cattgtgtgt tcaacgaatt ttctagaacc 1980 cagtccagag gccaaaatac gtgatgatgc cccgttccgc aatcgccggc acgtgttgat 2040 taatgtcaag attgacaacg aaaggcagta cgattctagt gactttacgc aaaatcagat 2100 ctatgagata atgcgctatg agagagagac atacgttgtg gagcaaagat tcacttctta 2160 tgcggattta tttgtgtttc ttcaaaataa atatgaggcc cacaatgctg aacagtctgc 2220 caacatagga agtgtagttc cctacaaagg caagcaaaac ctactaattc tacgtggtct 2280 gctgaatttg gccaatgttt ctaatgctgg tttattaaaa gctcaagcta agaaacttgg 2340 ccaaccagaa ggttttaggg aatacactca cttattcact atccagcata aaaatcgttt 2400 tgcacatctt ggtttcgctg atgcatatga ctccgtgata tggtatgggg aacattctga 2460 tgttggtagg agtgaggaga tggccaaaat gacggcaagc catgtcatga aggcttacaa 2520 aatccttata cagggtgaaa acttgagctt actcattaaa aatcacttgc gctatcttgt 2580 gtgtcctgac aattatgatc gtgattttaa cttcacgggg ggagttgggg atacactgtt 2640 ggagcaacaa ttgctgccag atatgcaggc tcttcacacc tgggaaagat ttgttttgtg 2700 tgctatgggt tactacatgg aaactcagaa aatgcaacca tggtacaaga ccgtcactga 2760 aaaagttttt gagaatctca aggcagccta ttcacgtgag tttagttcgt ggcccactcc 2820 tttgaaagcc atagttggca tcgtcttggc agctctggtt ggtaaaggtt tttggtttgc 2880 ctacaaggct cttactgaag gtggcaatgg ttccagtctt gttggggctg cttctgttgt 2940 cttgacaagc accaccaatg ccgtcgccca gagcaggaag ccaaatcgtt ttgatgtggc 3000 acaatatcgt taccgtaatg ttcctttgaa gcgcaggcag tgggctgatg cacagatgtc 3060 tttggatcat agcagcgttg ctattatgag caagtgcaag gctaactttg aattcggaaa 3120 taccaatgtg caaattgttt tagttcctgg acggaggttt ttaggatatg cgcatttctt 3180 taagaccatt aaacatccga taacagttaa gatagttaaa gacggccggc actttctcca 3240 tgtttatgat cccaaaggca tgacatattt tgacgattct gagatctgtg tttatcacag 3300 cgctagtttc gaggacatcc cacacactac ttgggatgtt ttttgctggg attgggagaa 3360 aagtctttgt aagaaatttc cagctgactt tctttcctgt aagtatgaca gattgactat 3420 gtcatatgag cctacatacg ctggcattaa tgtggagaca gtttttgaaa ctttggaatt 3480 gcgtgccaat ggtgccgtgc gcaagctccc ttgcttcctg aaatatgagg ctccgacggt 3540 tgatcgggat tgtgggagtc ttatagttgc acaggtagaa ggacgatacc aaatcgttgg 3600 tatacatatt ggaggtgacg ggagaaatgg ctttgcggcc cctttgcccc atattccaca 3660 ggctgccgat gcacagtgca ctaccaagta ctttagtttc tatccaaatg agcaggaaga 3720 agagacaggt gtcgcactag ttggtcagct taagcccgag gtatggatac ccttgccaac 3780 gaaaacctca ttggtggaga cggaggagga gtggcatttg gacacaaaaa gtgacaaggt 3840 gcctagtatc ttgagttctg aagaccctcg tattaagcaa gggggcaatg aaggatatga 3900 tccttttaga ggaggtgtta ctaaatattc acaaccaatg gggcacctgt gtggagaaac 3960 ccttggggaa gtagccaatg agattttgga agagtggcat gattgccttg aacccgatga 4020 gaattttgat gatgttgatt tggaagtggc cataaatggt attgatggtt tggattacat 4080 ggatcgtatt cccttagcca cctctgaagg atttcctcat atcttgtcaa gagaaaaagg 4140 ggaaaaaggc aaagggagat ttgttgaaac cgtgggtggt aagtgcgctc ttatagaagg 4200 cacttcagtg tatcatgctt ttgaaatctt gcaagagcaa tgtaagaagg aagttcccac 4260 tctgataggg attgaatgcc ctaaggatga aaagttgcct ctgcgcaaga tttatgacac 4320 cccaaagacg cgttgtttca caatacttcc catggaatac aatttgttgg tgaggatgaa 4380 gtttttaaaa tttgttcgct tcattatgag aaatcgtgag aagcttgcct gtcaggttgg 4440 aatcaacccc tacagcatgg agtggacgag attggctggg agtcttttaa gtgtcggcca 4500 gaatattttg tgctgtgact ataaatcatt tgatggcctt ttgagcaagc aagttatgac 4560 ggttatcgcc accatgatca acagattgtg tggtggatcg caggagagtc agaccatgag 4620 aatgaatctc cttatggctt gttgttcccg ttatgctatt tcaaagaacg aggtgtggcg 4680 tgttgaatgc ggtatacctt ctggatttcc tttaactgtc atttgtaatt ccattttcaa 4740 tgaaatactt gtgaggtact gttatcggaa aattttggag aagaacaatg taccacgacc 4800 tctacatgtg aattttcctc ggatggtgaa attggttact tatggggatg acaatctgat 4860 ttccgttagt catgttgtcg caagtgtgtt taacggtaga actctgaaag ctgaaatggc 4920 acagtttgga gtgaccataa cagatggtat tgacaaaaca agtcccacac tggaatttcg 4980 taagttgagc aattgtgatt tcttgaaaag aggattcaaa ttaaatggtc tcatttacga 5040 ttcaccagag gagaagagta gtctgtgggc tcagcttcat tatgtcaaca caactaacct 5100 ggataagcaa gaagcatatc ttgtgaattt gaataatgtg ctgaaggaat tatatatgta 5160 tagtccagag gaaatgaaca tgctaagaag gaaggctttg cagctacctt ggattaacaa 5220 ggatgatgtg ctaaatgggg ctcagattaa agagtttttt gcctatcagc gccaacaact 5280 acttccagac aatgaggata gcttggatat gatgttaaag ccagatcttt tgggatctct 5340 tgttcctgac gttgtgttgt tggataaggg tgttcaggtg tcaggcaggc tcaaaacgat 5400 aaatctcaag tatactgagc tcggtgaaaa gcgtgacaat gagttttggg ttatctttaa 5460 tggacatttt cctaccaacc gtctccctga gcactgtttg aacattaaat gggaggcagg 5520 cactggtaga gggaatttac caacacagtc ttggataagt aacaacattt ctaggcccaa 5580 ttctgagtat aacaggaaga ttaggactgc ttatgctgct ggaaaggttc tgtgtttctg 5640 tgcctggggt gatatgatac ctgttagtat tatgttgctg ctttcctcag ccagaaacaa 5700 ctggattccc aaaggacaaa cgaatgaggc cttgacctct ttcatggaat atgccaaaag 5760 cctgaaattc ctcccacgtg agtgtgagta tgcctttact gatgtgaagt aaagcttcaa 5820 taaatttaac taacgttatt atcatatgtt gctttgttcg ttttt 5865 //