ID AB050782; SV 2; linear; genomic RNA; STD; VRL; 5956 BP. XX AC AB050782; XX DT 10-JAN-2002 (Rel. 70, Created) DT 30-JAN-2009 (Rel. 99, Last updated, Version 5) XX DE Patchouli mild mosaic virus RNA1 for polyprotein, complete cds. XX KW . XX OS Patchouli mild mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Fabavirus. XX RN [1] RP 1-5956 RA Onobori Y., Ikegami M., Natsuaki T., Sugimura Y.; RT ; RL Submitted (03-NOV-2000) to the INSDC. RL Contact:Masato Ikegami Tokyo University of Agriculture, Department of RL Bioscience, Faculty of Applied Bioscience; 1-1-1 Sakuragaoka, Setagaya-ku, RL Tokyo 156-8502, Japan URL :www.nodai.ac.jp/app/bios/ XX RN [2] RA Onobori Y., Ikegami M., Natsuaki T., Sugimura Y.; RT "Complete nucleotide sequence and genome organization of patchouli mild RT mosaic virus RNA1"; RL Unpublished. XX DR MD5; 2f3098e69a76343ebbf2b45aa4ae0e4c. XX FH Key Location/Qualifiers FH FT source 1..5956 FT /organism="Patchouli mild mosaic virus" FT /segment="1" FT /host="Pogostemon cablin Benth." FT /lab_host="Chenopodium quinoa Willd." FT /isolate="Philippines" FT /mol_type="genomic RNA" FT /country="Philippines" FT /db_xref="taxon:73149" FT CDS 234..5846 FT /codon_start=1 FT /transl_table=1 FT /product="polyprotein" FT /db_xref="GOA:Q8V978" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8V978" FT /protein_id="BAB83045.1" FT /translation="MDFSTMQVVVGFLKTSMGLQSIRDIVQKAKVDEKDKTLLHIHLCF FT FHANEMARDLNEGMDVSQIHSSSAIKYRAAIVTRHVKMNVETGRYDRKRMVEYNNEACI FT NWFSCEFMEEKGENQELLVGEGRVEEIVDEFLANCNVSERNDQVSTVRNANYAFGQGLY FT EYATRVSDAIVAVISGSIKKGIDEFLDKVYTAMNQIFAAWMPKIRAAFQWFENIKEVVK FT KWVNTMHEKINCILVGMEDCLYMGAGLVAATCIVTLLEKFMVAIGILTKPCGAATLFLT FT AAMAAISAAYVCSKAVEKSVMLSNLLHFVTSNCQIVLSALFNHDATKKELTANQDGSEV FT PIGLGQFGVSTMLQDVANLMSTWSTNSVTEIGRTFGAISQIKNGILALKDMIYFVFEKL FT SDLAHKVLGFESQVLADLTILLGENVADWLSECDCMVSYMLEFNSRNREIFDRLSQLIE FT KGRLICTGVLRTGHRGSSQVMALVTKALEKLIELHNSVVMSGSNTTRKSPFMVFFTGAS FT GTGKTSVVQRVAINWLQEEQLGTNEIYSRNGQDPFWSGYKRHAVVTYDDFGAVPGTTSN FT EAEIINVISRNPYATVMAGLAEKGMYFDSRLVLASSNFLAANPESGVHDSEAYERRRHA FT VIRVSLKPGVPYNADDPCANQAYTLLESKTPFREIQTFETYAELWSYLYTSFKEHEVQE FT ELYLKSLPILDSDKKEALEGLVGLTVIATSFAPKAVMQYGVEKFPGYHFLVSDGEKCYF FT WHGDGSVESASVEQMQLSKQDVVQLKQQGLSTAMMYKDLAKAFPTLNSLAVLYAKNIVV FT KRWVGPDLEPMKSCEDVYMREQIGNLPKWQRAYLYVLSKYLTTQSPRGWFMECLEETKK FT NLRATYLWEYKQWPLPLKLALGSLIAIMAGGAIWYSLQSLWCMSGDASFVAGAATVFSV FT SSFAGQSDIPNRDNSERSFRNRKVRARTWQGQSSCFGDSALWIAETCMATLTFSNVRTQ FT VCLAPGRGFFGVNHCLVAIPAGVMVKMDSSIGVTYFVWEKEKLMQFDGNEIALYMTSTL FT PKTVDSLLGRIHFDVETLPKTFSAVFFSYKYDPMIQQMVPELGSVTCKVHNKAYTLAHG FT EYRREIPQSLSYEASTVAGDCGSLILAEIDGKFKLVGMHVAFNGREGSASFIPYHASLD FT QKVGQGEFMLKYQEWAEPKILGPGCRAMGLIEPEHALAASGKTTFVETPEEWHLDYPCD FT KLPSVLARGDPRLAGTVHADYDPFASGMSKYAKEAGPFDAASLKQVCSGIVEIWEDASA FT DFPMDEVDLDTAINGLENVEFFDALVLGTSEGFPYRLDRGPGDKGKSRYVSGESGNLKI FT TDEGVLSDIAWFEEVSKTQVPDLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVI FT RKKFLNFVRFFMKRRDVLPAQVGINPYSREWTRMANKLLSKGNNILCCDYSRFDGFLPK FT CIMNEIGNMIARLMRVDEVSRTQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIV FT NSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVS FT FMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFV FT KAKKLEMAEAYINNCNNILRELWLHDVKEAKEFRNKVLRNLRWIGHEQLLNMQQLAVFH FT SEQMNGVSDFLSTCVTVDSIPLMDPLVPGLLPVKTCEIIPRVFVAAEKHFEGNFNDFFT FT ISITTSRKFEEDKGFVLLFPYGAGRGGLPTTQFMRENVIRKGCSIQKKFRQAYEKGNNI FT LFISQSSVVPAYVFAVMLLHSIGAITRLSSNKALTQAMQTCKRLEYLPKEYEEFF" FT mat_peptide 234..1271 FT /product="putative protease cofactor" FT mat_peptide 1272..3041 FT /product="NTP-binding protein" FT /function="helicase" FT mat_peptide 3042..3119 FT /gene="VPg" FT /product="genome-linked protein" FT mat_peptide 3120..3746 FT /product="cysteine protease" FT mat_peptide 3747..5843 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" XX SQ Sequence 5956 BP; 1685 A; 1001 C; 1550 G; 1720 T; 0 other; gttttaataa aatattgaaa caaacagctt tcgttccgaa aaacagcttt cagttactaa 60 acagctttcg ttccgataaa acagctttca gaaacaaaca gctttcaatt ttctttcgga 120 aaatttagtt actgcgtggc tttggaaaga acccggaaaa agggagtgtg atttaaagcg 180 caccatatat ttcaaagatc atattgattt cattttgcta ccttaatttt aaaatggact 240 tcagtacgat gcaagtggtt gtgggatttt tgaagacttc gatgggttta caatccattc 300 gagacattgt gcagaaagca aaggtggatg agaaagacaa aacattgctt cacatccacc 360 tgtgcttctt tcatgccaat gaaatggccc gagatttgaa cgaaggcatg gatgtgagcc 420 agatacatag ctcttcagct atcaagtatc gggccgcaat tgttacgcgc catgtgaaga 480 tgaatgtgga aaccggaagg tatgatagga aacgcatggt ggaatacaac aacgaagcat 540 gtatcaattg gttttcctgt gaattcatgg aggaaaaagg ggagaatcag gagctactag 600 ttggagaagg tcgtgtggaa gaaattgttg acgagtttct agcaaactgc aacgtctctg 660 agcgcaatga tcaagtgtcc actgtgagaa atgccaatta tgcatttggc cagggattgt 720 atgagtacgc aactcgtgtc agtgatgcaa tagtggcagt gatttcagga tcaatcaaga 780 aaggcataga tgagtttttg gacaaagtgt acacggctat gaatcagatt tttgcagcgt 840 ggatgcccaa gattagagct gcttttcagt ggttcgagaa tatcaaagag gtcgtgaaga 900 agtgggtaaa cacaatgcac gagaagataa attgcatttt ggtaggtatg gaggattgtc 960 tttacatggg agctggactc gttgcagcta catgtatcgt cacattgctt gaaaagttca 1020 tggtggcaat tggcatcctt accaagcctt gcggagcagc gactttgttt ttgacggctg 1080 ctatggcagc tatttctgcc gcatatgtgt gttccaaggc cgtagaaaag tcggttatgc 1140 ttagcaattt gctacacttt gtgacttcca attgccaaat tgtgttgagc gctttgttca 1200 atcatgatgc gacaaagaaa gagttgactg cgaaccaaga tggaagtgaa gtaccaatag 1260 gccttggcca gtttggagtt tcaacgatgc tgcaagacgt ggcaaacttg atgtcaacgt 1320 ggtccacaaa ttcagtcact gaaattggaa gaacattcgg tgctatttcg cagatcaaga 1380 atggtatttt agctttgaaa gacatgattt attttgtgtt tgagaagttg agtgacttag 1440 ctcataaagt gttgggtttt gaatctcaag ttttggctga tcttacaatt cttttgggtg 1500 agaacgttgc agattggttg tccgagtgcg actgcatggt ctcttatatg cttgagttta 1560 actcaaggaa tagggagata tttgataggc tctcacaact cattgagaaa ggcagactta 1620 tatgcacagg agtgttgagg acaggccacc gtggctcttc gcaggtcatg gcacttgtca 1680 ccaaggcttt agagaaactg atagagttgc acaattcagt agtgatgtct gggtccaata 1740 ccactaggaa atctcccttt atggtttttt tcacaggtgc ttcgggtaca gggaaaacct 1800 cggttgtgca gagggtagcc atcaattggt tgcaggagga acaactgggc acaaatgaga 1860 tatattcgcg caatgggcag gatccttttt ggtcaggtta caagagacat gcagttgtca 1920 cgtatgacga ttttggcgct gttccaggta caacctcgaa tgaagctgaa atcatcaacg 1980 tgatatcgag aaatccgtat gctacagtta tggcaggatt ggcagagaaa ggcatgtact 2040 tcgattcgag attggttcta gctagtagta attttctggc tgctaacccc gagtcaggag 2100 ttcatgactc agaggcatat gaacggcgaa gacatgcggt tattagagtt tctctcaagc 2160 ctggagtgcc ttataatgca gatgacccat gtgccaatca ggcgtacact ttgcttgagt 2220 ccaaaacacc ttttagggag atacaaacat ttgagactta tgcagaatta tggtcttatt 2280 tgtacacaag cttcaaggag catgaggtgc aggaggagtt gtatttgaaa tccttgccca 2340 ttttggattc agataagaaa gaagctttgg aaggccttgt gggtctcaca gttatagcca 2400 cttcatttgc tcctaaggca gtaatgcaat acggagttga aaaattccca gggtaccatt 2460 ttttggtttc tgatggggag aagtgttatt tctggcatgg agatggttca gtggagagtg 2520 ctagtgtgga gcagatgcaa ttgagtaagc aagatgtggt acaattaaag caacaaggac 2580 tgtcgacagc gatgatgtac aaggatttag ctaaagcttt tccaactttg aattcattgg 2640 ctgtgctgta tgctaagaac atcgtagtga aacgttgggt ggggcctgac ttggaaccca 2700 tgaaaagttg tgaggatgtt tacatgaggg agcaaatagg caacttgccg aaatggcaaa 2760 gggcatattt gtacgtgctt agcaagtact tgacaaccca aagtccacgt ggctggttca 2820 tggagtgtct tgaagagaca aagaagaatt tgagagcgac ctatttatgg gagtacaagc 2880 aatggccatt acctttgaaa ttggctttgg gttctttgat agccatcatg gcaggtggag 2940 caatttggta ttcacttcaa tctttatggt gcatgtcagg agacgcctct tttgtggcag 3000 gagcagcgac ggttttctca gtttcttcat ttgctggaca gagcgatatt cctaatcgag 3060 ataattcaga gcgatcattt agaaacagga aggtgcgtgc taggacgtgg caaggtcaaa 3120 gttcatgttt tggcgactca gctttatgga ttgctgagac atgtatggcg acattgacat 3180 tctctaatgt taggacgcaa gtgtgcttgg ctcctggcag agggttcttt ggagtgaatc 3240 attgtctcgt agcgattccc gcaggggtta tggtgaaaat ggattctagt attggagtga 3300 cctattttgt gtgggagaag gaaaagttga tgcaatttga tggaaatgaa atagccttgt 3360 acatgacgag cactttacct aagacggtgg actctctttt agggaggatt cattttgatg 3420 tggaaacttt gcccaagact tttagtgctg tcttcttttc ttataagtat gatccaatga 3480 ttcaacaaat ggtgcctgaa cttgggagtg ttacatgcaa agtccacaat aaggcttaca 3540 cgcttgctca tggtgagtac aggagggaaa ttccccaaag tctttcatat gaagctagca 3600 ctgtagctgg agattgtggt tctttgatat tggcagagat tgatggaaaa ttcaagcttg 3660 ttggcatgca cgtggctttc aatggaagag aaggaagtgc aagtttcata ccctatcatg 3720 ctagtttgga ccagaaggtt ggccaaggag agttcatgtt gaagtaccag gaatgggcag 3780 agcctaagat tctggggcca gggtgtagag caatgggtct catagaacca gagcatgctt 3840 tagcggctag cggaaagaca acatttgttg agacaccaga agaatggcat ctagattacc 3900 cgtgtgataa acttccaagt gtgctggccc gaggagatcc aagattggca ggaacagtcc 3960 atgcagatta tgacccattt gcttctggga tgagtaagta cgccaaggag gcaggccctt 4020 ttgatgcagc tagtcttaag caagtgtgtt caggaattgt tgagatatgg gaggatgctt 4080 cggcagattt tcccatggat gaggtagatt tggacactgc tattaatggt ttggagaacg 4140 tggaattctt tgatgctttg gttcttggga catcagaggg atttccttat cggcttgatc 4200 gtggtcctgg tgacaagggt aagagcaggt acgtatcggg agagagtggc aacttgaaaa 4260 taactgacga aggagtcctt tcagatatag cttggtttga agaagtgagc aaaactcagg 4320 taccagatct ttattgcatt gagtgtgtaa aagatgaacg tttgccgatt cggaaagtgt 4380 tgcatgaacc caagagcagg ttgttcacag tgctaccaat gtcttacaac atcgttatca 4440 gaaagaaatt tctgaacttt gttagattct tcatgaaaag gcgtgatgtg ctaccggctc 4500 aagttgggat taatccttac tcacgagaat ggacccgaat ggctaacaag ttgctgagca 4560 aaggaaacaa cattttgtgc tgtgactaca gtagatttga tggctttctg cccaagtgca 4620 tcatgaacga gataggcaac atgatagcta ggctcatgag agttgatgag gtgtcaagga 4680 cccagataaa gaacttaatg ctagcatgca ctagtaggta tgccatgtgc aacagagttt 4740 tatacagagt tgaaaatggc atcccatccg ggtttccctt gacagtcatt gtgaattcca 4800 tcttgaatga aatcttggtt aagtatgcgt attggcactg ttttgaagac aacccgagtg 4860 tgcagagcaa ctttgatgct catgtgtcga tggttgttta tggggatgac aatttgattt 4920 ccgtgtcaga tgcaattagt tcaaagtttg atgggagttt tcttgtgagt ttcatggaag 4980 gtttggggat taaagtgact gatgggattg acaaaacaaa ggtcggaatt gagtttcgga 5040 gattggagaa ttgtgatttc ttgaaacgtt ctttcaagat gagcccggat ggtacctggc 5100 gtagtcccat gtctaaagag agtttgtggc cacaattgca ttttgtcaag gcaaagaaat 5160 tagaaatggc agaggcatac atcaacaatt gcaataatat tttgcgtgaa ttgtggttgc 5220 atgacgttaa agaggccaaa gagtttcgca ataaagtctt gaggaatttg agatggattg 5280 gacatgagca attgctaaac atgcagcagt tggcagtttt ccacagtgag cagatgaatg 5340 gagtgagcga ctttttgtca acttgtgtaa cagtggatag cataccattg atggatcctt 5400 tggtgcctgg attgttgcca gtcaaaacat gtgagataat cccccgagtc tttgtggcag 5460 cagagaaaca ttttgaaggg aatttcaatg atttcttcac gatttcaata accacaagcc 5520 gcaagttcga agaagataag ggatttgttc ttttgtttcc gtacggagct ggaagaggag 5580 gattgccaac cacgcagttc atgagagaga atgtcataag gaaaggatgc tcgattcaga 5640 agaagtttag gcaggcgtat gagaaaggaa ataatattct cttcatttca cagagttcgg 5700 tagttcctgc ttatgttttt gctgtgatgc ttttacattc cataggggca atcactagat 5760 tatcaagcaa taaagcactc actcaagcga tgcaaacttg caagaggttg gagtatttac 5820 ctaaagagta tgaagaattc ttttgatttt gtgtgtgttt tgggtgtata ttttatgtaa 5880 atcactactt ttattgtata atatgtatta tgcagggttg aaatgccttt tcccaagtaa 5940 atttcagtag tgaggg 5956 //