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ID AB045371; SV 1; linear; genomic RNA; STD; VRL; 9293 BP. XX AC AB045371; XX DT 03-OCT-2000 (Rel. 65, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 2) XX DE Apple stem pitting virus gene for RNA polymerase, complete cds. XX KW . XX OS Apple stem pitting virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus. XX RN [1] RP 1-9293 RA Yoshikawa N.; RT ; RL Submitted (30-JUN-2000) to the INSDC. RL Nobuyuki Yoshikawa, Iwate University, Faculty of Agriculture; Ueda 3-18-8, RL Morioka, Iwate 020-8550, Japan (E-mail:yoshikawa@iwate-u.ac.jp, RL Tel:81-19-621-6150, Fax:81-19-621-6150) XX RN [2] RA Yoshikawa N., Matsuda H., Oda Y., Isogai M., Takahashi T., Ito T., RA Yoshida K.; RT "Genome heterogeneity of apple stem pitting virus in apple trees"; RL Unpublished. XX DR MD5; 2ebd63fbc8ab694afcbf9e5de9e2d301. XX FH Key Location/Qualifiers FH FT source 1..9293 FT /organism="Apple stem pitting virus" FT /isolate="IF38" FT /mol_type="genomic RNA" FT /db_xref="taxon:35350" FT CDS 61..6618 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="RNA polymerase" FT /db_xref="GOA:Q9E948" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008041" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q9E948" FT /protein_id="BAB15950.1" FT /translation="MALLSRTAAEEVIASFTSEEQSRISTQAVLTLTNVEKDKHDLFNY FT ALPELAKMKLFNSGIYLSPHSYRPHSHPVCKTLENNILFNILPSYLDNSFYLVSIKKNK FT VDFLKRRHPDLQMVETINRYISSLDKTRYGGFFHVSPSKISAKFKCDRRTGFESDASLV FT DLIPGCMEGARKRFFFHDELHYWSKEALITFLDHVKPEVMLASIVFPPEILAGAKESLN FT PWCYTFKIINKDLVFFPDGEQSEAYIQPVSGSYLLRTGKITTPSGDVFQLDLLKSSFSH FT HLISITKGEAIGQKMRFFSGFEAVSMKGLNPLRRKVESCLPISKSTILKIYRYLRTLKK FT PDLQSAMAKLSQVCKDPNGYEIKFFEEFSKLCLKCETLNTNMLPDMRKIVQGFFLKLFP FT NPIARNFKVVQQLHLDNFIETLEEFNFSVGTEDLSLSWKDDLEFINLTFGETDFNVEAS FT FSEAWGLKKDYVDIITVHHTPYSVTKFEKYDHQFHSLLSVDSTLALTKIARIVLSSYQA FT CTPESFSEARVSNLAVNIIIAANLRACFAVTDLWTTFEKILIKEGKRAKGRMRKKFFHE FT LGVRWFLFLDGANQRFLPPSRDGLVSRLATFDRFIKGCQRFNLLHEGRMSLRQTFKNFK FT LQPLLTDVDLPRVEVVETLNSHHANPGDDLSRKEAHHDLEVVPIGNVGCSVVPCNCPLN FT CFVQNADVNALHGNLVFLDFIGGARGRGASFYSRDLKGYSYTGFSHQSRGWPDFLDRFL FT DENKIPRKFYNQCLVQEYSTGHGLSMHRDDEDIYDANHQVLTVNYTGEAIFCIDCQGVG FT FEVKLDGPQMLLMPFGFQKNHKHGIKSPSKGRISLTFRLSKNDSEQVPITEVVSIEHGD FT SDDRATLKQMERKAGKNGGRPDNDSSEMPAGHAKMIEDSSGSAPVQEFLIQIDSSLLEY FT ANKSLSGLSKDVINCDMCLCNSPWLKNEELKFSEALRDLAFASGFNPTDRFSLARGIEG FT VRSVNRIISDLPTHIFPLRGAMHVVDLDDKTITGDIKEGFYSGFRRWKITSCSTDLIML FT AFLKPKMTLGGELRAHEDECELSDLTEKLHGCSIILSRKFEPDLFHSFDVEADGNCFWH FT SVGPLIGVDGEYIKKILHDQAKKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNV FT LYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALGRREVDVLAVLG FT KPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDAGGELIMVNENGRIPAEFSLEKE FT HLAHIPVLSRRKFSPIVSDLNRVSNSAMRFLALNGAEIDYRPSIDRASTLLDSFELGAT FT GVLCQGIKEAQKGLSSMLIPECVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVS FT PRRSLAESINHDLGLAKNGGRRSGKSKDLKNVRVKTFELFVLHLDSIKEGHTVVIDEIQ FT LFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRSYKFN FT ILSQRFRNPIFYGRLPCNLNKARLTLDEEEYTLWDSIQEFSMMGRKDCPVVLVSSFEEK FT KIVAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFING FT MGVTWDNAITHFVGKPLHKFFTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKL FT AGDPWLKTRIFLGQSADIEPELVEEVEAAEDWFKTHIPIMGLEAVRAQWVDRILSREVR FT EFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSP FT AAEHAKLRRARPFGKFLLDTFLKRVPLNSRHNESMMSEAVHAFEEKKLSKSMATIENHS FT GRSCEDWPIDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHAVLCRFAPYMRYIEAKV FT FEVLPKNLYIHSGKNIDDLAEWVTAHKFNGVCTESDYEAFDASQDHFILAFELEVMKFL FT GLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEASTFLFNTMANMLFTFLRYDLNGKEAI FT CFAGDDMCANSRLKVTNQHAKFLDKIKLKAKVQFTITPTFCGWGLCEHGVFKKPDLVLE FT RLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNYLLK FT SNIRDLFRGEVVPSVS" XX SQ Sequence 9293 BP; 2564 A; 1856 C; 2210 G; 2663 T; 0 other; ggatacgcaa acaaactctg aacaagtaaa ttataaaggc aacttcataa tttactcgat 60 atggctcttc tttcaagaac agctgcagag gaagtaatcg catctttcac ttccgaggaa 120 cagtccagga tttcaaccca agctgtgtta actctgacta atgtggaaaa ggacaagcat 180 gaccttttta attatgcact gccagagtta gcaaagatga agttgtttaa ttcgggaatt 240 tacctcagcc cccactccta ccgtccacac tctcatcccg tgtgcaaaac ccttgaaaat 300 aatatattgt ttaatatttt gcctagttat ttggacaact ctttttattt ggttagtata 360 aaaaaaaata aggttgattt tttgaaaaga aggcatcctg atcttcaaat ggtggaaact 420 attaaccgtt acatctcaag tctcgataag acaaggtatg gtggtttttt ccatgtgagc 480 ccttcaaaaa taagcgccaa attcaaatgt gacagaagaa caggctttga aagtgatgca 540 tcacttgtcg acctcatccc tgggtgcatg gagggagcaa ggaaaagatt cttctttcat 600 gatgagttgc actattggag taaggaagca ctgattacct ttctcgacca tgtgaagcct 660 gaagtaatgc tagcttctat agtcttccct cctgaaatcc ttgcgggtgc aaaagagagt 720 ctgaatccct ggtgctacac cttcaaaatc attaacaagg atctcgtttt ttttccagat 780 ggtgaacaat cagaagctta catccaacct gtctcgggct cctacttatt gaggacggga 840 aaaattacaa cgccttctgg tgatgtcttt caactggatt tgctcaagag cagcttttct 900 catcacttaa tttctataac taaaggggaa gctattgggc agaaaatgag attttttagt 960 ggctttgaag cagtctcaat gaagggtttg aatcccttac gccgtaaggt agaaagctgc 1020 ttaccaattt cgaagagcac catactcaag atataccgtt atttgcgtac tctcaagaag 1080 cctgatcttc agtcagccat ggctaagctt agccaagttt gtaaagatcc taatggttat 1140 gagatcaaat tctttgagga attttcgaag ttgtgcctaa agtgtgaaac cctcaacacg 1200 aatatgcttc ctgacatgcg taaaattgtc caaggcttct tcctgaaatt atttccaaat 1260 ccaatcgcaa ggaatttcaa agttgttcag cagctccatt tggataattt tattgagacc 1320 cttgaagagt tcaactttag tgttggcaca gaggatttgt cactcagctg gaaggacgat 1380 ctagaattca ttaatcttac ctttggggag acagacttca atgtggaggc ttcattctct 1440 gaagcctggg gcttgaagaa ggattatgtg gatatcataa ctgttcatca caccccttac 1500 tcggtcacta aatttgagaa atacgatcac cagttccact ccctgttaag tgtggattcc 1560 accttagccc tcaccaaaat tgccagaatt gtcttgtcgt cataccaggc ctgtactcct 1620 gaatccttca gtgaggctcg ggtgtccaat ttagctgtga atattataat tgctgcaaat 1680 cttagagctt gctttgctgt cactgacctt tggacaacct ttgaaaaaat attgataaag 1740 gagggtaaaa gggctaaagg gagaatgcgg aagaagttct tccatgaatt gggtgttagg 1800 tggttcctgt ttttggatgg tgccaatcaa agattcttac cccccagcag agatggattg 1860 gtctcaaggt tggcaacctt tgaccgtttt ataaagggtt gtcagcgctt taacttactt 1920 catgagggcc gcatgtcatt gaggcaaaca ttcaagaatt tcaagctgca acctcttcta 1980 actgatgttg atttgccaag agtagaggtt gtcgaaactt taaattctca tcatgccaac 2040 ccgggtgatg acctgagtag gaaggaagct catcatgatc ttgaagttgt tccgatcggg 2100 aatgtgggat gcagcgttgt accttgcaac tgtcctctaa attgcttcgt gcagaatgca 2160 gatgttaatg cccttcatgg taacctagtc tttcttgatt ttataggagg tgctcgtgga 2220 cgaggtgcca gcttttactc tagggatctt aagggttaca gttatacagg attcagccat 2280 cagtcaaggg gttggccaga tttcctggac agatttttgg atgaaaataa gatccccaga 2340 aagttttaca accagtgcct agttcaggag tacagcactg gtcatgggct atcaatgcac 2400 agggacgatg aggatatcta tgatgctaac catcaggttc tgactgtcaa ctatactggt 2460 gaagcaattt tttgcattga ttgccagggc gtaggttttg aagttaaact tgatgggccg 2520 caaatgctct taatgccatt tggatttcaa aagaatcaca agcatgggat caagtcacca 2580 tctaagggga ggatttcatt aacttttcgg ctctcgaaaa acgatagcga gcaagtcccc 2640 atcactgagg ttgtgagcat cgagcacggt gattctgatg atcgtgctac cctaaagcaa 2700 atggaacgga aggctggaaa gaatggtggt aggcctgaca atgattctag tgaaatgcct 2760 gcagggcatg ccaagatgat tgaggatagt tcaggtagtg caccagtgca ggagttcttg 2820 attcaaatag attcttctct tcttgaatat gcaaataaga gtctgtctgg tctctccaag 2880 gatgttatta actgtgacat gtgtctctgc aacagtccct ggctcaaaaa tgaggagctg 2940 aaattctctg aggccctgag agatttggcc ttcgcttccg ggttcaatcc aactgacaga 3000 ttttcattgg cgagagggat tgaaggtgtt agaagcgtca acaggattat ttcagatctg 3060 cctacacaca ttttcccttt gcgtggtgca atgcatgtag ttgatcttga tgataaaaca 3120 attacaggtg acatcaagga gggattttac tctggcttca gaaggtggaa aatcaccagc 3180 tgttctacag atttgataat gcttgccttt ctgaagccaa aaatgacatt gggcggtgag 3240 ctccgggcgc atgaggacga gtgtgaactc tcagatttga ctgaaaagct gcatggttgc 3300 tcaataatat taagcaggaa gttcgagcct gatttgttcc actcctttga tgttgaagca 3360 gatgggaatt gtttctggca ctctgtgggc ccacttattg gggttgatgg tgagtacatt 3420 aagaaaatcc ttcatgatca ggcaaagaaa gatggggtga agtgtccaag attgagcaag 3480 cagctcgagg gtaacacctg ggccgagagg gaggctgtgg cttatttctg ttctcattat 3540 ggaatcagac tcaatgtcct ttacactaga gaagaatgca cctggatttt caaaccacat 3600 gaggtgctca aggcggcaac tctcgtttgt caagacaacc attttaaacc ttgcatgcca 3660 gtaaatggtt gtgttattag agcaattgct tctgcattgg gtagaagaga ggttgatgta 3720 ttggctgttc ttgggaaacc agcccatgag gatctatttg aggaggtggc tgaaggcaga 3780 ggatttagca tctttgattt gacccgactc tttgaaattt tttccatatg tggtagtgtt 3840 gatgccggtg gagagttgat catggtcaat gaaaatggga gaatacctgc tgaattttcc 3900 ttggagaagg aacatcttgc acatatccct gtcctgtcca gaagaaagtt tagccccatt 3960 gtctcagatc taaatagagt ctcaaacagc gcgatgcgat tcctggcctt gaatggagct 4020 gagattgatt atcgaccttc cattgatcgt gcttccactc ttttggatag ttttgaactt 4080 ggtgcaactg gggtcctctg tcagggcata aaagaggcac agaagggctt atcttctatg 4140 ctcattcctg agtgtgtgca tgataggaaa ctgatcatga ttcttggaac tttcggttgt 4200 ggcaagagct ccttatttaa gaagttcatt gaaaagtcac caggcaaagc gataacattt 4260 gtgtccccaa gaaggtctct ggcggagtca ataaatcatg atcttggact tgctaaaaat 4320 ggtggaagga gaagtggaaa gagcaaggac cttaaaaacg ttagggtgaa gactttcgaa 4380 ctctttgttc tccatcttga tagtattaag gaaggtcaca cagtggtgat tgatgagatc 4440 caactcttcc caccaggcta tattgatctg ataattttgg ggcttaagca aaatgttaac 4500 atcataatag ccggtgatcc ctgtcaaagt gattatgata gtagctcaga taggcacata 4560 tttgcgggga gtgaaagtga tattatgagg attctaagcg gaaggagtta taagttcaac 4620 atcctaagtc aaaggttcag aaatccaatc ttttatggta gactcccctg caacctgaat 4680 aaagcgcggt taacccttga tgaggaagag tacacactct gggacagtat tcaggaattt 4740 tcaatgatgg gtcgaaagga ttgtcctgtc gtgcttgttt ccagctttga agagaaaaaa 4800 attgtggcag cacatcttgg gcttaagatg aaatgtataa catatgggga atcaactggc 4860 ctcaactttc aaaagggtgc gattttggtc acatacgaaa gtgccctaac tagtgatcgt 4920 cgttggtgga ctgctctatc acgatttagc catgacattc acttcataaa tggaatgggg 4980 gttacatggg ataacgcgat cactcatttt gttgggaaac ccttgcacaa gttctttacc 5040 aagcgcgcct gcaatgatga tatcattgat ttgctccctg ggagaccgga attaatagag 5100 ggttttcaga gtcaggttgg ggctgatgaa ggtgtccgag aagctaagct ggctggtgac 5160 ccatggttaa aaacaagaat ttttttgggg caaagtgctg acatagaacc tgagcttgtt 5220 gaggaggttg aagcagcaga ggattggttt aaaactcaca tacctataat gggtttggaa 5280 gctgtcagag cgcagtgggt agacaggatt ctctcaaggg aagttaggga attcagaatt 5340 ggggatatca ccacagaaca attcacagat gagcacagta agaatcgagg gctggaattg 5400 acaaatgcag ctgagcgcta cgaggctatc tatcccaggc ataaaggaac tgacactgcc 5460 accttcctca tggctgttaa gaaaaggttg agcttttcat ctccagcagc tgagcacgcc 5520 aaattgagaa gggcaaggcc atttggaaag tttctactgg acactttcct taaaagggtt 5580 cccctgaata gtaggcacaa tgagtcgatg atgagtgagg ccgttcacgc ttttgaagag 5640 aagaaattat caaaaagcat ggccacaata gagaatcatt caggaaggtc gtgtgaagat 5700 tggccgattg ataaagcatt gatctttatg aagtcccagc tttgcacaaa atttgataat 5760 aggttccgga gtgctaaggc tggacaaact ctagcctgct ttcaacatgc agtcctgtgt 5820 agatttgctc cctatatgag gtacattgaa gccaaggtct ttgaggtttt gccaaaaaat 5880 ctttacattc attcagggaa aaatattgat gacctggctg agtgggtcac tgctcacaaa 5940 ttcaatggcg tgtgtacaga gtcagactat gaagcatttg atgcttcaca agatcacttt 6000 attctagcct ttgaacttga ggtcatgaaa tttctgggct taccacctga tctcattgct 6060 gattacactt tcattaaaac tcatttgggt tcaaagcttg gtaattttgc tatcatgcgc 6120 tttactggtg aggccagcac tttcctgttt aataccatgg ctaatatgtt gttcactttc 6180 ctgaggtacg atctcaatgg taaggaggct atctgttttg ctggtgatga tatgtgcgcc 6240 aattctagac tcaaagtcac aaatcagcat gccaagtttc tagacaaaat caagctcaag 6300 gccaaagtgc agtttaccat aaccccaact ttctgtgggt ggggtttgtg cgaacatggt 6360 gtgtttaaga aacctgattt ggtcttggag aggcttcaga tagccaggga gacccgaaac 6420 ctagagaatt gtattgacaa ttatgccata gaggtttcat gcgcctacaa gatgggagag 6480 aacttgaatc tttatctcac tccccaagag gtcgatgcgc attacaattg tgtgcgtttc 6540 atagttcaac ataactatct tcttaagtca aacatccgtg atctcttcag aggggaagtt 6600 gtcccaagtg tttcttagtt taactctcct tcaaaccctg tagagtagtt agtcttattt 6660 ttgaattatg cttttaatga attcatgtgt aagcatatta ggttaagcta agtgtgttca 6720 attatggaaa ctgtgctcag tttgttaaat gagtttggat ttgaaagaac tgttgaacct 6780 ctaagtgatc caattgttgt gcatgctgtt cccggttccg gaaaaaccac tctgatcaaa 6840 caagctctaa ttaggaacca caacattgag gccgtcactt ttggagtgcc tgagaaagca 6900 aatatccacg gaacctacat aaagaaggca aggcaaggtc aaaggggaag aggtaattac 6960 agcattttgg acgagtacct ttctggagaa tactccactg gatttaactg cttgttttct 7020 gacccctacc aaaatcacgg ggattgtctg agagcccact ttattggacg ctgttcacac 7080 aggtttggga ggcagacagt tcaaatcttg cgggacctgg ggtacaacat tgcaagcagc 7140 aaggaagaca tagttgaaag gaagaatatt ttccagctta ttgaaccaga gggtgtgata 7200 atttgccttg agaaggaggt agagaatttt cttgcctggc acagagtcga gtacaagctc 7260 ccctgtcaag ttcgtggtgc tacctacgat acggtcactt ttgtgcacga aaaacctttg 7320 gaggaattgg tggggccaga cctgtttgtt gcattaacta ggcacaagaa caaacttgtg 7380 ctagttagca attagtatgc cttttgccca gcctcctgac tattctaaga gcgtgtaccc 7440 tgtggccatt ggagttgcca ttgcagttgt tcttttcact ctgaccagaa gcacactgcc 7500 tcaagtcggt gataatatac acaatctccc tcacggagga aattatcagg acgggacaaa 7560 gaggattagc tactgtggac caaaagagtc atttccaagc agttcactcc tttcctctgg 7620 cacgcctatg atcctggggt taatattctt cttgatactt gccatctatg tttctgagaa 7680 gtggaatcgg tcaggctctc gtcgctgcat gtgctgcgta cctggtgctc ctgcttgcac 7740 agcaactgtt catgattaat tccaagcaat gcacaattgt cattacaggt gagtcagttt 7800 caatagtagg ttgtgattat tcagaagctt tcatagagtt agttaaaggt cttaaacctt 7860 attaccaccc attaggtcag ggtgtagttg cttaatatta tataagtttg agtgtgttta 7920 gttgtatttc tgcgattgaa gttaaagagt ctccatttca aattccaata atggcctcaa 7980 atggttctca accaccggct tctgccccaa tggtctcagt ggaagagcca gtcaatcctg 8040 tttcagcccc aaatcctagt gttgtgagtt ctgtcccagt gagtgttcca gcgattagtg 8100 agccagtgat ttctcaggtg cagtctattg cacctattgt gagtgggttc gaccctaacc 8160 ttcatgggag gctgactaat gagcagatga ggcaggccca tgaggaggcc gcaagaaggg 8220 ggtatgaaga gggtgctcgt ccaaatcagc gtgtgatgcc aacaactagt gcttacaata 8280 actatgccag catgaattcc aacccttttg aaactggaac tgccttcagt gaagcacctc 8340 ctgtgagtat gggcccctac cccaccttct cgagttcagg aacttccagt gagcccaatg 8400 cgcagcgtat tttcccaact ctgcagggag tgaggccatc atcccatgat gctagtctca 8460 ctgcgcaaca atcagttgcg ggcagtggtg tagggacgcc cttcactctg gggaatcgag 8520 ctccaaggaa tgttgcctcc aacactggag ggatgaggag acgccttgat tcaattgggc 8580 ttaagaacat aaggtatgaa cctcaagctg gggtcgttgc cagcaaccaa aagataaggg 8640 cagttggggc cgcgctgata ggtatgggaa tccctgagca tcaacttact gaagtgggcg 8700 tttacctagc acgacattgt gccgacgttg gagcctctga caaatcaaca ctgttgggaa 8760 cctttccagg ttcggacata actttggagg aagttgggac aatgatcaaa caaactgagg 8820 ggtgtacttt gaggcagtat tgtgccttct acgcgaagca tgtctggaac ctcatgctgc 8880 aaactcaaag tccccctgca aattgggttg gtaaggaatt taagttcgaa actaggtatg 8940 ctgccttcga cttcttcttt ggagttgaga gcactgcctc acttgaacct gctgatggtc 9000 taatcagatt acctactcag gccgagagag tggcaaatgc caccagtaag gaaatacaga 9060 tgtaccgcat ccgctccatg gagggtaccc aggctgtaaa tttcggcgaa gtcaccgggg 9120 gtaagattgg gcctaaacct gtgttgtcca ttaggaagta atttgtttac gtttcctttc 9180 aatttcaatc accgtattta tgcttttgaa taaagttgat cccgacctaa ttgggacggc 9240 taagtgtgtt taatttccat gctttagctt atttttgttt taactagatt ttc 9293 //