ID AB042292; SV 1; linear; genomic RNA; STD; VRL; 3358 BP. XX AC AB042292; XX DT 11-MAY-2000 (Rel. 63, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 2) XX DE Cucumber mosaic virus IA-1a gene for 1a protein, complete cds. XX KW 1a protein. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3358 RA Natsuaki K.T., Kawaguchi A.; RT ; RL Submitted (28-APR-2000) to the INSDC. RL Keiko T Natsuaki, Tokyo University of Agriculture, Department of RL International Agricultural Development; 1-1-1 Sakuragaoka, Setagaya-ku, RL Tokyo 156-8502, Japan (E-mail:keiko@nodai.ac.jp, Tel:81-3-5477-2412, RL Fax:81-3-5477-4032) XX RN [2] RA Natsuaki K.T., Kawaguchi A.; RT "Cucumber mosaic virus (CMV) RNA1;Indonesia"; RL Unpublished. XX DR MD5; 812cf73bba22b82a97bcc13dd228e78a. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3358 FT /organism="Cucumber mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /codon_start=1 FT /transl_table=1 FT /gene="IA-1a" FT /product="1a protein" FT /db_xref="GOA:Q9JFY7" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9JFY7" FT /protein_id="BAA95598.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSCVTHYLRGHNLHCCSPCLGIRDKMRHAKRLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCAAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSEAEDVTSLSGKIDSSGFTGVRKFKTLVAFDFINESTMSYVH FT DWKNIKSFLTNQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPTSQDLVKWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDIEDYHYIGFAILLHTKMKYEQLGKMYDMWNASCISKWFAALTR FT PLRVFFSGVVRALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAALVAAQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDSSETSSLTSDDTADVCGKEQEVSELDSLSV FT QTRSPITRIAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNVHFSTGRWMRPVPEGVVYSVGFNERGLGPKSEGELYIVNSECVVSNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFDPTTDMIVTANKKSAQDVRMALFQS FT SDSKEACTFVRTADSVLLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAVASVTLVDLDASRFYVTMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYCGVLGGDLIAEC FT IARA" XX SQ Sequence 3358 BP; 843 A; 724 C; 827 G; 964 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctcct ctgtaaaatt accctttgaa 60 aacctctctt ttctaatctt ttctttgcaa ttcctatggc gacgtcctcg ttcaacatta 120 atgaactggt agcctcccac ggcgataaag gactactcgc gaccgccctc gttgataaaa 180 cagctcatga gcagctcgag gagcaattac aacatcaacg tagaggccgt aaggtctaca 240 ttcggaacgt tctgagtgta aaggattccg aggtcatccg gaatcggtat ggagggaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caagacctcg 420 tcttagactt cggaggaagt tgcgtcacac attacctccg cggacataac ctacactgct 480 gttccccttg tttgggtatc cgcgataaaa tgcgccacgc gaaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttttgcactc 600 atcctgctgc tgattgcaaa gtacaagccc actttgctat atctattcat ggaggttacg 660 atatgggctt tagaggatta tgtgcggcaa tgaatgctca cggaaccacc attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgacca aggcgtaata cccgaactta 780 attgccagtg gaggaagatc aggagtgctt tctccgaagc tgaggacgtc acttctttgt 840 ctggtaaaat cgattcttca ggattcaccg gtgtgcgtaa gtttaagact ttggtggctt 900 ttgattttat caatgagtcc accatgtcct acgttcatga ttggaagaat ataaaatcgt 960 ttcttactaa ccagacgtac tcgtacaaag ggatgactta tggcattgaa cgttgtgtca 1020 ttaatgcggg tattatgacg tataagatta tcggtgtgcc tgggatgtgt ccacccgaac 1080 tcattcgaca ttgtatttgg ttcccctcta tcaaggacta tgttggtctg aaaattccca 1140 cgtcgcagga cttggttaag tggaagacag tgcgtatact aacgtcaacg ttacgtgaga 1200 ctgaagagat tgcaatgagg tgctataatg ataagaaagc atggatggaa cagtttaagg 1260 ttatcttagg cgttctttct gctaaatcct ctaccattgt tatcaatggt atgtccatgc 1320 aatctggtga acgaatagat attgaagatt atcattatat agggttcgcc attcttcttc 1380 acacaaaaat gaagtatgaa caactaggaa aaatgtatga tatgtggaat gcttcatgta 1440 tttcgaagtg gttcgcagcg ttgactagac cgttgcgtgt gtttttctct ggtgttgttc 1500 gcgcattgtt cccgactttg aggccccgtg aggaaaagga attcctgatt aagctctcca 1560 ccttcgttac ttttaatgaa gagtgctcat tcgatggtgg agaagaatgg gacgtgatat 1620 catccgctgc gcttgttgcc gcgcaggctg ttaccgatgg gaaagttttg gctgcgcaaa 1680 aagccgagaa gcttgccgaa aagctagcac agcccgtgat tgaggtatcg gacagctctg 1740 agacgtcatc tttaacgtct gatgatactg ctgatgtttg tggaaaggag caagaggttt 1800 cggaacttga ctccctgtca gtccagacac gttcccccat cactagaatt gctgaaaggg 1860 ctactgctat gttagagtat gccgcttatg agaaacagct gcatgacacc accgtgtcta 1920 acttgaaacg tatttggaac atggcaggtg gtgatgataa gagaaactcc ctcgaaggca 1980 atttgaaatt tgtctttgat acgtatttta ccgtcgatcc tatggtgaat gttcactttt 2040 ccacgggtcg gtggatgcgt cctgtgcctg agggagttgt ttattccgtc ggtttcaatg 2100 agcgtggttt aggtccgaaa tctgaaggag agctatacat cgttaacagc gagtgtgtgg 2160 tcagtaatag cgaatctttg tctgctgtca cacgttcgtt acaggctcca acagggacta 2220 tcagtcaggt cgatggggtt gctggctgtg ggaagactac ggcaattaag tctatttttg 2280 atccgaccac tgatatgatc gtcaccgcga acaagaagtc cgcccaagat gtgcgtatgg 2340 cattgttcca atcgtcagac tccaaagagg cttgcacttt cgtacgaacg gccgactctg 2400 tgctgcttaa tgattgtccg accgttagca gagttttggt tgatgaggtc gtgctgctac 2460 actttggtca attatgtgct gtcatgtcaa aactgaaggc tgtgagagct atatgtttcg 2520 gggattcaga gcagattgct ttttcctctc gagatgcctc gtttgatatg cgtttctcaa 2580 agattattcc tgatgaaact agtgatgcgg acactacatt ccgtagccca caagatgttg 2640 tgccgcttgt gcgtctaatg gctacgaagg cccttccgaa aggaacccat tcaaaatata 2700 ccaagtgggt ttctcaatct aaagtgaaga gatctgttac atctcgtgcc gtcgcaagtg 2760 tgactttggt tgacttagat gcttctaggt tttatgtcac gatgacgcaa gctgataaag 2820 cttcactgat ttcaagggcg aaagagatga acttaccgaa gactttctgg aatgaaagaa 2880 tcaaaaccgt gcatgagtct caaggtatct ctgaggatca cgttactttg gtaagattga 2940 agagcacgaa gtgtgacctg ttcaaaaaat tttcatattg tcttgtcgcg ttaaccagac 3000 ataaggtcac tttccgctac gagtattgtg gtgtactagg aggcgattta atcgccgaat 3060 gtattgctcg tgcttagcgg tgtccctcct tcgggcggga tctgagttgg cggtaaactg 3120 taaaccgtct gaagtcacta aacgctttgc ggtgaacggg ttgtccatcc agcttacggc 3180 taaaatggtc agtcgtggag aaatctacgc cagtagactt acaagtctct gaggtgcctt 3240 tgaaaccatc tcctaggttt cttcggaggg actttggtcc gtgtacttct agcacaagat 3300 gctagtttca gggtacgggc acccccccat ttcaatgggg gtctccaaaa ggagacca 3358 //