ID AB041960; SV 1; circular; genomic DNA; STD; VRL; 3371 BP. XX AC AB041960; XX DT 15-DEC-2000 (Rel. 66, Created) DT 02-NOV-2009 (Rel. 102, Last updated, Version 4) XX DE Torque teno tamarin virus DNA, complete genome, isolate: So-TTV2. XX KW . XX OS Torque teno tamarin virus OC Viruses; Anelloviridae; Epsilontorquevirus. XX RN [1] RP 1-3371 RA Okamoto H.; RT ; RL Submitted (19-APR-2000) to the INSDC. RL Contact:Hiroaki Okamoto Jichi Medical School, Immunology Division and RL Division of Molecular Virology; 3311-1 Yakushiji, Minamikawachi-Machi, RL Kawachi-Gun, Tochigi 329-0498, Japan XX RN [2] RX DOI; 10.1006/viro.2000.0588. RX PUBMED; 11080484. RA Okamoto H., Nishizawa T., Tawara A., Peng Y., Takahashi M., Kishimoto J., RA Tanaka T., Miyakawa Y., Mayumi M.; RT "Species-specific TT viruses in humans and nonhuman primates and their RT phylogenetic relatedness"; RL Virology 277(2):368-378(2000). XX DR MD5; 797db9c959d71b75d3fdefdd91208912. DR EuropePMC; PMC1143717; 15956568. XX CC Partial sequence of this TT virus isolate (nt 305-404) has been CC deposited as accession no. AB032316. XX FH Key Location/Qualifiers FH FT source 1..3371 FT /organism="Torque teno tamarin virus" FT /isolate="So-TTV2" FT /mol_type="genomic DNA" FT /isolation_source="Cotton-top tamarin" FT /note="originally submitted as 'Torque teno virus'" FT /note="synonym: TT virus" FT /db_xref="taxon:687382" FT CDS 570..872 FT /codon_start=1 FT /transl_table=1 FT /note="ORF2" FT /db_xref="UniProtKB/Swiss-Prot:Q9DUC2" FT /protein_id="BAB19315.1" FT /translation="MQRRTQELIWKELVDNSHKLFCNCMDPQNHYRLICQNLNREPGEP FT WRTAGGIGEGGAGGDGAAAGGEGDVHGRPAGAEDGEDGADAAMAAALAAFEDATG" FT CDS 704..2842 FT /codon_start=1 FT /transl_table=1 FT /note="ORF1" FT /db_xref="GOA:Q9DUC1" FT /db_xref="InterPro:IPR004219" FT /db_xref="UniProtKB/Swiss-Prot:Q9DUC1" FT /protein_id="BAB19316.1" FT /translation="MAYGRRYWRRRRWRRRGGRWWRRRRPWKTRWRRRRRRWRRRRYGR FT RARRFRRRHRVGRWRKLFRRVKSRVVRQWDPNVTRRCMINGYDHALFWGQQAQHRILYD FT NLPWPIKKEGTQEGGSMNMMQLTLQFLYKDNLAGRNRWTRSNWDMDLAKYHETTLLFPR FT HRNYSYVVFITRGPNDILDEHTYPGLHPEKMLGRRKKIVVWSKDLRPHGKNYIRVRVPP FT PQVFKNQWYFQRDICQMPILTLGFAAFDPVNVTLAGNMANSSIILWGIPYWSRPMPYNT FT WYDYWTKCAGPQNIPWSDRQTNIAAGITQKSAQTCLKLKNKHFGLTNTAIVSDYDKDNI FT DKNTKQIKTIVMSLNRWYPKWPMKWKDAGDINTQTPFPYRYSWREDQGWGNKVRLWTRE FT CRTDIPEETLGIENMPLYVLMNGYIDYVTNHSTHSPLNWVVSVFCPYTDPPMTNVIPVG FT KDWFIQNVEPGENKYPSDNADNTFAPGEKTKIKNYDSSKDEFTGNVIRAPDVYDSLPAQ FT QALYIASPFSLKWAQTTGSIVFFYQSKWTWGGDFPRQRPIIDPCNRPKWGGLPVTGYDE FT TGLLLQNPEKAEARARGHLGDLRRGDLTKTALKRLMELTSTEEGSPQKKKRRDKEVRTT FT ADLLRPEDVYCWMSPTPETPPKAGKTPESSFAETYDNHTKLAKRVKKEIHNQNRRHRLL FT LAHLRRERDRLLGHHLLR" FT CDS 2424..2903 FT /codon_start=1 FT /transl_table=1 FT /note="ORF3" FT /db_xref="UniProtKB/Swiss-Prot:Q9DUC0" FT /protein_id="BAB19317.1" FT /translation="MTRQDYYCKIRKKRRPGRGDTSATSDGGTSPKRPLRDSWNLLPQR FT RAAHKKRREETRRSELPPTYYGPKTSTAGCRRPQRRPRKLERRQSPALRKPTTTTPNSR FT KGSRKRSTTRTEDTDSSWPTYEESETDSWVTTSSDSDEYPPKTRRAHKTAPRLRL" FT CDS 2920..3132 FT /codon_start=1 FT /transl_table=1 FT /note="ORF4" FT /db_xref="UniProtKB/Swiss-Prot:Q9DUB9" FT /protein_id="BAB19318.1" FT /translation="MTQKDWGEENQGMLTGATWLDECQSAYLWGRKPRHSWADPPESLD FT NWSFKTHPFHPWRINFTLTPPPETP" FT repeat_region 3301..3371 FT /rpt_unit_seq="GC" XX SQ Sequence 3371 BP; 1115 A; 937 C; 842 G; 477 T; 0 other; aaaccctgat ggaacgaaaa aaatacaaat cccgcgtaca gcgaaaaccc cccccccacc 60 cccgattggt ccaaatacaa aacctcattt gcatacacac aaaaagggga agtgaacctg 120 attggacgaa accagaagac ctcatttgca taccacgcaa atgaactgac gcaaaaccgc 180 cgaaattcgg cggaaggagg aaacttctcc cattggacag aaccagaaga cctcatttgc 240 attgacgtgt cacttcctca ttggacgaaa actatataaa gaaccggggt gacgaatggc 300 tgagtttact ccgccgggtg taggagacgc gaccggaggg agaggcatcc gcagcccgtg 360 ggcgggaccc gcagagcatt ccgaaggtat gcggcgcgtg taggggcaat tcgggcacgg 420 gctcccgggc ggaccgggca aggttctctg gggtgcccgc ggcgaagccg cccgtactaa 480 ggcgataatg aaactaacct tagctacctg ctgccgcaac agaaccgggg ccgaccctgg 540 cgagatacta caaactacag acggcgccga tgcagcggcg gacccaggag ctgatatgga 600 aggagctagt tgacaacagc cacaagctat tctgtaactg catggacccg cagaaccact 660 accgcctcat ctgccagaac ctgaaccggg aaccgggaga gccatggcgt acggccggag 720 gtattggaga aggaggcgct ggaggagacg gggcggccgc tggtggcgaa ggagacgtcc 780 atggaagacc cgctggcgca gaagacggag aagatggcgc cgacgccgct atggccgccg 840 cgctcgccgc tttcgaagac gccaccgggt aggtcgctgg agaaaactat ttaggcgggt 900 gaagagcagg gtagtcagac aatgggaccc caatgtaacc agacgatgca tgataaacgg 960 gtacgaccac gcactgttct ggggacaaca ggcacaacac agaatactat atgacaacct 1020 accctggcct ataaaaaaag aagggacaca agagggaggc agtatgaaca tgatgcaact 1080 cacgttacaa ttcctgtaca aggacaacct agcagggaga aacaggtgga cgagaagtaa 1140 ctgggacatg gacctagcaa aataccacga aaccacctta ctgttcccca gacacagaaa 1200 ctacagctac gtagtgttca tcaccagagg gccaaacgac atcctagacg aacacacata 1260 cccagggctg cacccagaaa agatgctagg caggagaaaa aagatagtag tatggagcaa 1320 agacctgaga ccacatggga aaaactacat aagggtcagg gtaccaccac cacaagtatt 1380 caaaaaccaa tggtacttcc agagagacat ctgccaaatg cccatcctga cactaggttt 1440 cgccgccttt gacccagtaa acgtcacatt agcgggaaac atggccaaca gctccataat 1500 cctctgggga atcccatact ggagcagacc catgccatac aacacctggt atgactactg 1560 gaccaagtgc gcaggaccac aaaacatacc ctggtcagac agacaaacca acatagcagc 1620 gggaataact caaaaatccg cacaaacatg cctaaaactg aaaaacaaac acttcggact 1680 aacaaacaca gccatagtca gtgactacga caaagacaac atagacaaaa acacaaaaca 1740 aataaaaaca atagtaatga gcctaaacag atggtaccca aaatggccaa tgaaatggaa 1800 agacgcagga gacataaaca cacagacacc attcccatac agatactcat ggagagaaga 1860 ccaagggtgg ggaaacaaag tcagactatg gaccagagag tgcagaacag acataccaga 1920 agaaacacta ggaatagaaa acatgccact gtacgtactg atgaatggct acatagacta 1980 cgtcacaaac cacagcacac acagcccact aaactgggta gtctcagtct tctgccctta 2040 cacagacccg ccaatgacca acgtaatccc agtagggaaa gactggttca tacaaaacgt 2100 agaaccggga gaaaacaaat acccctcaga taatgcagac aacacatttg caccaggaga 2160 aaaaacaaaa attaagaact acgacagcag caaagacgaa ttcacaggaa acgtaataag 2220 agccccagac gtatacgact ccctaccagc acaacaagca ctgtacatag ccagtccctt 2280 cagcctaaaa tgggcacaaa ccacaggctc cattgtcttc ttttaccaga gcaaatggac 2340 ctggggcggg gacttcccca gacagagacc aatcattgat ccgtgcaaca gaccgaagtg 2400 gggagggcta cccgttaccg gttatgacga gacaggacta ttactgcaaa atccggaaaa 2460 agcggaggcc agggcgaggg gacacctcgg cgacctcaga cggggggacc tcaccaaaac 2520 ggcccttaag agactcatgg aacttacttc cacagaggag ggcagcccac aaaaaaagaa 2580 gagaagagac aaggaggtca gaactaccgc cgacctacta cggcccgaag acgtctactg 2640 ctggatgtcg ccgaccccag agacgccccc gaaagctgga aagacgccag agtccagctt 2700 tgcggaaacc tacgacaacc acaccaaact cgcgaaaagg gtcaagaaag agatccacaa 2760 ccagaacaga agacacagac tcctcctggc ccacctacga agagagcgag accgactcct 2820 gggtcaccac ctcctccgat agcgacgagt accccccaaa aaccagaaga gcgcacaaaa 2880 ctgcccctcg ccttcgccta taaagacctc tgggaagcca tgacccaaaa agactgggga 2940 gaagaaaacc aaggcatgct aaccggagcc acgtggttag acgagtgcca atcagcgtac 3000 ctgtggggca ggaaacccag acacagctgg gcggatcccc cggaaagcct agacaactgg 3060 tcatttaaaa cacacccctt tcacccatgg agaataaact tcaccctgac cccgcccccg 3120 gaaaccccct aaataaaaaa tgctcgaggt ggtcgataaa gggagcccgg agtccgttta 3180 tataagttca cgccgagaac acaaaatggc gaagacacaa gatggcgggg ggtgaaaggt 3240 cacgggggcg taaaaaaact aaacagcctc gaagggtgaa actcgaccac ctcgacgtaa 3300 ggggggggcg ggtgaccgcc ccccccttag accccccccg gggggggcag agcccccccc 3360 tgcacccccc c 3371 //