ID AB041958; SV 2; circular; genomic DNA; STD; VRL; 3798 BP. XX AC AB041958; XX DT 15-DEC-2000 (Rel. 66, Created) DT 02-NOV-2009 (Rel. 102, Last updated, Version 5) XX DE Torque teno virus 26 DNA, complete genome, isolate: Mf-TTV3. XX KW . XX OS Torque teno virus 26 OC Viruses; Anelloviridae; Alphatorquevirus. XX RN [1] RP 1-3798 RA Okamoto H.; RT ; RL Submitted (19-APR-2000) to the INSDC. RL Contact:Hiroaki Okamoto Jichi Medical School, Immunology Division and RL Division of Molecular Virology; 3311-1 Yakushiji, Minamikawachi-Machi, RL Kawachi-Gun, Tochigi 329-0498, Japan XX RN [2] RX DOI; 10.1006/viro.2000.0588. RX PUBMED; 11080484. RA Okamoto H., Nishizawa T., Tawara A., Peng Y., Takahashi M., Kishimoto J., RA Tanaka T., Miyakawa Y., Mayumi M.; RT "Species-specific TT viruses in humans and nonhuman primates and their RT phylogenetic relatedness"; RL Virology 277(2):368-378(2000). XX DR MD5; c27426134c7ed46ed0308c23c1a9a30e. DR EuropePMC; PMC1143717; 15956568. DR EuropePMC; PMC3302375; 22171250. DR EuropePMC; PMC4059270; 24744300. XX CC Partial sequence of this TT virus isolate (nt 188-287) has been CC deposited as accession no. AB032301. XX FH Key Location/Qualifiers FH FT source 1..3798 FT /organism="Torque teno virus 26" FT /isolate="Mf-TTV3" FT /mol_type="genomic DNA" FT /isolation_source="Japanese macaque" FT /note="originally submitted as 'Torque teno virus'" FT /note="synonym: TT virus" FT /db_xref="taxon:687365" FT CDS 391..816 FT /codon_start=1 FT /transl_table=1 FT /note="ORF2" FT /db_xref="InterPro:IPR004118" FT /db_xref="UniProtKB/TrEMBL:Q9DUC8" FT /protein_id="BAB19309.2" FT /translation="MAEAPTGQWEPPQQGVGPRELDWWRGTWWNHAAFCGCGDPSFHLA FT LLSHHNFGPRGPPGGPPAPPPPPPPVAQRGPPNDPGLPRFLPLPGLPPQPPEDPPARPG FT GGGDGPDAAVGGGGGAEDAWDPGDVEELLAAAAEEEG" FT CDS 693..2891 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:693..695,aa:Met) FT /note="ACG for ATG as start codon" FT /note="ORF1" FT /db_xref="GOA:Q9DUC7" FT /db_xref="InterPro:IPR004219" FT /db_xref="UniProtKB/TrEMBL:Q9DUC7" FT /protein_id="BAB19310.1" FT /translation="MAWWWRRWPRRRRRWRRWGRRRVGSWRRRGVAGRRRRGRRVRRRR FT RRRVWRRGRRWRLRRRRRLRRYFRNTLILRQWQPTTIKSLRISGWFPGVVCSNRRSQNN FT YIVHLPDIPARGGGFGGNISITKWNLSMLWHENLMNRNRWSRRNNDLDLVRYLGGSWKF FT YRDPDRDFIATYSLESPMTTNQYSHLQSHPQIMLLRRHRILIPSLKTKPRGKPYVKRKF FT KPPKLMRNQWYFQAHFCNVNLIKLTVVGLDLQKAWLRRGTESPIAEFAVLQQSLYNNIS FT LTATETNSEEQKKTWENVWAFPMSMTMNFRELLKTLGATDAELKDGPKRDSVPTLWKKY FT VTSNKMTENVFNDRQKKINWLVSNSGITTTNTLSRTMYFDRICGMFSSYVLDDTVRWDG FT TLKKAYVGVRYNPLIDEGTGNKVWIDPVTKKDTKFQPPQSLVLLEGQPLWLLLFGYTDW FT IKKFYADRNPGTTYRVTLLSPWTYPKLTNKDLYGYVPLGDDFCAGRHPYRQYKITPEWE FT TLWYPMVFNQEPALEAIVNCGPWMPRDEEARSWQLNLGYQFRFKLGGHLPPGQPPEDPC FT KQPTHDLPETNMLQLAVQASNPRTVDEPFHGWDLRRGMFSASSIKRMREYQTDDENFPD FT SPAKRSRYDPPTEGEPGALPSGSLQALKALFETPQTPGPLSPSWAKADEAPEVLQLQLQ FT RELQRQRKQQQRLQQGIQEMLLSMKLTQMGHHIDHRLL" FT CDS 2578..2841 FT /codon_start=1 FT /transl_table=1 FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q9DUC6" FT /protein_id="BAB19311.1" FT /translation="MMKIFQTLQQNEAATTPRQKENRELYPLALSKPSKPCSRPRKRLD FT RSARRGRKRTRRQKSSSSSSSGSSSDSESNSSDSSRVSRKCF" FT repeat_region 3666..3798 FT /rpt_unit_seq="GC" XX SQ Sequence 3798 BP; 923 A; 1124 C; 1036 G; 715 T; 0 other; acgtcacagg agggggcgta gtcccacccg cccacccggg tccgtcactc agggggcgtg 60 ccaaggctgg tcaccaccca ttttggcggg aaccaatcac aaaatggggg gggccggcca 120 atggtgagcc gccacgtcac ttcccgtcgc catctgataa aagtaagtgc acattcgaat 180 ggctgagttt atactgtccg gccgcaggtc ggtggaggag cgacagtaac gaccccagac 240 cagccctggg cgggtgccgg aggtgagttt acacaccgca gtcaaggggc aattcgggca 300 gggctggccg ggcatctggg caagtgtctg aaagcgtgcg ttgtccccca gataggccac 360 cgcgaggact acgacgagct cttctatgac atggccgaag cacccacggg acagtgggaa 420 ccgccgcagc aaggagtggg accccgagaa ctcgactggt ggcgcgggac gtggtggaat 480 cacgctgctt tttgtggttg cggtgatcct tctttccatc ttgctctact tagccatcat 540 aattttggac ctcgtgggcc gcctggaggc cctcctgcac caccaccacc ccctcctcca 600 gtagcgcagc ggggcccccc gaacgacccg ggcctgccgc gcttcctgcc gctgccggga 660 ctgcccccgc agccccctga agatcctcca gcacggcctg gtggtggagg agatggcccc 720 gacgccgccg tcggtggagg aggtggggcc gaagacgcgt gggatcctgg cgacgtagag 780 gagttgctgg ccgccgccgc cgaggaagaa gggtaaggag gagaaggagg aggcgggtgt 840 ggagacgtgg cagacggtgg agactgagac gcagacggag actgagacgc tattttagaa 900 acactctgat cctgagacag tggcagccca ccaccatcaa gtccctaaga atctcgggat 960 ggttcccggg ggtggtgtgc agcaacaggc gcagtcaaaa taactacatt gtgcacctgc 1020 ctgacattcc agccagggga ggtggattcg gagggaatat cagtatcacg aaatggaacc 1080 tgtccatgct gtggcacgag aacttaatga acagaaaccg gtggagccgc agaaacaacg 1140 acttagactt agtgagatac ctgggaggga gttggaagtt ctaccgagac cccgacagag 1200 actttattgc cacttatagt ttagagagcc ccatgaccac taaccagtac agccacctcc 1260 agagtcaccc tcaaatcatg ttgttaagga gacacagaat ccttattcct agtctaaaaa 1320 ccaaaccccg gggtaagcca tacgtaaaga gaaagttcaa gccccccaaa ctcatgagga 1380 accagtggta ctttcaggcc cacttttgca atgttaacct catcaagcta accgttgtcg 1440 gtttagactt gcaaaaggct tggttaagaa gaggaactga atcccctatt gcagaatttg 1500 cggttttaca acagagtctt tacaacaaca tatccctaac tgccactgaa acaaacagtg 1560 aggagcaaaa aaaaacatgg gaaaatgtat gggcatttcc catgagtatg accatgaatt 1620 ttagggaact attaaaaact ttaggagcca cagatgctga gttaaaagat ggccccaaga 1680 gagacagtgt ccctaccttg tggaagaagt atgtcacatc aaacaaaatg acagaaaacg 1740 tatttaatga ccgacaaaag aaaattaatt ggctagtttc aaacagtggc atcaccacaa 1800 cgaacaccct ttctagaacc atgtactttg atagaatctg tggcatgttc agctcctatg 1860 tgttagacga tacagtgagg tgggacggta ccttaaaaaa agcctacgtc ggggttagat 1920 acaatcccct gatagacgag ggcacaggaa acaaggtatg gatagaccca gtcactaaaa 1980 aggacactaa gtttcagccc ccacaaagct tggtattatt agagggacag cccttgtggc 2040 tcctgctctt tggatacacg gactggatca aaaagtttta cgcagacagg aacccgggaa 2100 ctacgtacag agtgaccctc ctaagcccct ggacatatcc caaactgacg aacaaagact 2160 tgtacggcta cgtgccgctg ggcgacgact tctgtgcggg acgacatcct taccgacagt 2220 ataagatcac gcccgagtgg gaaactctct ggtaccctat ggtctttaac caggagccag 2280 ccttagaggc catcgttaac tgtggcccct ggatgcccag agacgaggag gccagaagct 2340 ggcagttaaa cctggggtac cagttcagat ttaaactggg tggtcatctt cctcccggac 2400 agccgccgga agacccctgt aagcaaccca cccacgacct acccgagacc aatatgctcc 2460 agttggcagt acaagctagc aacccgcgga ctgttgacga gccattccac gggtgggacc 2520 tccgacgggg catgtttagc gcgtcaagta ttaaaagaat gcgagaatac caaacagatg 2580 atgaaaattt tccagactct ccagcaaaac gaagccgcta cgaccccccg acagaaggag 2640 aaccgggagc tttaccctct ggctctctcc aagccctcaa agccctgttc gagaccccgc 2700 aaacgcctgg accgctcagc ccgtcgtggg cgaaagcgga cgaggcgcca gaagtcctcc 2760 agctccagct ccagcgggag ctccagcgac agcgaaagca acagcagcga ctccagcagg 2820 gtatccagga aatgcttctg agcatgaagc tcactcagat gggtcaccac atagaccacc 2880 gactgctgtg atctttccca cgccaggcag aaaacgtacg tttaaccagt ttgacagaga 2940 cacggagaga gagctagcac acatgttccg gcgtttccct aggcagctgc cctacccaga 3000 cgagataccc cactaccctt acctccctcc tcacggctac agcccaccct acaaggtcaa 3060 cttcaacctg ggcttcaacc ccttcgcaat aaactaggcc tacgaatttc acttgagtgg 3120 agtctgttta tttaagtctc acccccgagg gagggggccc cccaagggtc acgggtcggc 3180 tcgctccgct cgcctccccg cgcacgcaca cccaaggtcg ctcccgttat taggagtcgc 3240 acgcgctgcg cgcgcgctcc cccgaatgct cctgacgccg gaacgtccgc gcttgcgcgc 3300 gtccgaacct cactcgctcc ggctcgcttc gctcgcctcc gctccctcgg atccggctag 3360 tcgctgaaac tttattaaac aaactccgag tcgccatgcc tctaaccaag ggctcctcgg 3420 tcggtggtga atatcgtagc caacgcgacg ccggatccga ggggccattt tggactgggg 3480 gcgtggtttt gatgacgtca cgagccgcca tcttggtgtc aaaggtcaaa ggttgcactt 3540 ccgcttccgg gtgagcggtc gccatgatga atcacgtggc ttgtgacgtg tgattcacgt 3600 gacggccggc catcttgtgg cggccgccat tttgtaaaca cgtacttccg catctgcgcg 3660 cgcaaccccc cccccgcggc ggggcgcgcg cttcgcgcgc gccccggggg gcgcctgcgg 3720 cgcccccccc cctgcagagc aggggccccc cccctcgggg gggctgcgcc cccccggccc 3780 cccccccctt ggcgcgcc 3798 //