ID AB040447; SV 1; linear; genomic RNA; STD; VRL; 4083 BP. XX AC AB040447; XX DT 03-OCT-2000 (Rel. 65, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Cocksfoot mottle virus genes for P1, protease, RNA-dependent RNA DE polymerase, coat protein, complete cds. XX KW coat protein; P1; protease; RNA-dependent RNA polymerase. XX OS Cocksfoot mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4083 RA Zhang F.Y., Toriyama S.; RT ; RL Submitted (21-MAR-2000) to the INSDC. RL Shigemitsu Toriyama, Tokyo University of Agriculture, Faculty of Applied RL Bioscience; Sakuragaoka 1, Setagaya-ku, Tokyo 156-8502, Japan RL (E-mail:torico@ nodai.ac.jp, Tel:81-3-5477-2537, Fax:81-3-5477-2668) XX RN [2] RA Zhang F.Y., Toriyama S.; RT "Nucleotide sequence and genome organization of cocksfoot mottle RT virus/Japanese isolate"; RL Unpublished. XX DR MD5; ddb849bfbbbf28965e673a9fffda38ca. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4083 FT /organism="Cocksfoot mottle virus" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:40979" FT CDS 71..397 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="P1" FT /db_xref="UniProtKB/TrEMBL:Q9E961" FT /protein_id="BAB15937.1" FT /translation="MCEPPPGFITVQCYTSDDLLTGDSTIVKSIPVRSCFFRQGVEVVL FT FRCESNKHRWSKIRGPVNLTVHCDICEFRETVEIPSLPKGFKVSSDFSYSVTWNCCYSR FT GRTE" FT CDS 430..2136 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2a" FT /product="protease" FT /db_xref="GOA:Q9E960" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q9E960" FT /protein_id="BAB15938.1" FT /translation="MGCSVVGNCKSVMLMSRMSWSKLALLISVAMAAAMTDSPPTLICM FT GILVSVVLNWIVCAVCEEASELILGVSLEATRPSPARVIGEPVFDPRYGYVAPAIYDGK FT SFDVILPISALSSASTRKETVEMAVENSRLQPLESSQTPKSLVALYSQDLLSGWGSRIK FT GPDGQEYLLTALHVWETNISHLCKDGKKVPISGCPIVASSADSDLDFVLVSVPKNAWSV FT LGVGVARLELLKRRTVVTVYGGLDSKTTYCATGVAELENPFRIVTKVTTTGGWSGSPLY FT HKDAIVGLHLGARPSAGVNRACNVAMAFRVVRKFVTVENSELYPDQSSGPARELDAETY FT TERLEQGVAFTEYNISGITVKTSDREWTTTEALRVARYKPLGGGKAWGDSDDEDTQETA FT IRPLNYQRAGSLRGSPPLANLSSTRATSGVTKESSIPAACLSDPLESRVAGLEKLCAER FT FTEMFELLRQSSQNSKSSPGQAADQKQKSDRSSSKPAGLRESKRPSICNWQSLTSKPST FT RGPDPAPASAESPGVVRTSSQKSKRSRTRGKSTSKQVPASPSPKSGSATSK" FT CDS 1743..3257 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2b" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q9E959" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9E959" FT /protein_id="BAB15939.1" FT /translation="MPFRSAGKSSCRFREAVCRAVHRDVRAAETEFPELKELAWPSRGS FT KAEIGSLLFQAGRFERVEAPVNLQLAITNLQAQYPRSRPRSCFRREPWCREDFVAEIEK FT IAHSGEINLKASPGVPLAEIGVSNQQVIDVAWPLVCEAVVERLHALASVDPRHDDWSPE FT ELVKRGLCDPVRLFVKQEPHSRQKIEQGRFRLISSVSLVDQLVERMLFGPQNTTEIALW FT HSNPSKPGMGLSKASQVALLWEDLARTNQTHPGAMADISGFDWSVQDWELWADVSMRIE FT LGSFPALMAKAAISRFYCLMNATFQLTNGELLTQELPGLMKSGSYCTSSSNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWVDDAPRKYSALGHLCKEYEACPVLPDGDLKEVSFCSHLIS FT KGRAELETWPKCLFRYLSGPHDVESLEMELSSSRRWGQIVRYLRRIGRVSENDGEERSS FT SESPATTKTQGSAAAWGPPQEAWPVDGASLSTFEPSSSGWFHLEGW" FT CDS 3097..3858 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:Q9E958" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:1NG0" FT /db_xref="UniProtKB/TrEMBL:Q9E958" FT /protein_id="BAB15940.1" FT /translation="MVRKGAAAKAPQQPKPKAQQQPGGRRRRRGRSMEPVSRPLNPPAA FT VGSTLKAGRGRTAGVSDWFDTGMITSYLGGFQRTAGTTDSQVFIVSPAALDRVGTIAKA FT YALWRPKHWEIVYLPRCSTQTDGSIEMGFLLDYADSVPTNTRTMASSTSFTTSNVWGGG FT DGSSLLHTSMKSMGNAVTSALPCDEFSNKWFKLSWSTPEESENAHLTDTYVPARFVVRS FT DFPVVTADQPGHLWLRSRILLKGSVSPSTNL" XX SQ Sequence 4083 BP; 929 A; 1041 C; 1143 G; 970 T; 0 other; gataatagtg cgaagaaaga cacactgtta tcgtttcccc tcccgaatca gaggttgaga 60 agtagcttag atgtgcgaac ctccccctgg ttttataacc gttcagtgct acactagcga 120 cgatttgttg acaggcgatt ctacgatcgt caagtccatt cccgtccgct cgtgcttctt 180 ccgccaaggc gtcgaagttg ttctgttccg gtgtgagtct aacaaacatc gctggtcgaa 240 gatcagaggt cctgtgaact taacagttca ttgtgatatc tgtgaattcc gcgagactgt 300 tgagattcca tctctgccca aaggctttaa agtatcgagc gatttctctt acagtgtaac 360 gtggaattgc tgctacagcc gtggcaggac agagtagcac agaggttagt tggttgaggg 420 tgaccaagaa tgggttgttc tgttgttgga aactgcaagt ccgtgatgtt gatgagcagg 480 atgagctggt caaagctagc tctcctcata tccgtcgcaa tggcggcagc catgacagac 540 tccccaccca ctctgatatg tatggggatc ctagtgagcg tggtgctcaa ctggatcgtc 600 tgcgcagtat gcgaagaagc ttcagagcta attctgggcg tttccttgga agcgactcgt 660 cctagtcccg cacgggttat aggagagccg gtctttgacc cccggtacgg ctatgtcgct 720 cctgctatct atgatggcaa atcgttcgat gtgatcctgc ccatttccgc tctgtcctcc 780 gcttcaacaa ggaaggagac agtggagatg gcagttgaga actcacgact acagcctcta 840 gagagcagtc aaacgccgaa gtccctagtg gctttgtact cgcaagacct gctatcaggt 900 tggggttctc ggattaaagg ccctgatggc caggaatatc ttttgacagc cctgcatgtg 960 tgggagacca acatctctca cctgtgtaag gatggaaaga aggtaccgat aagcggatgc 1020 ccaatcgttg cgagctctgc tgactcggac ttggactttg tccttgtgtc cgtgccgaag 1080 aacgcttggt ctgttttagg cgtcggtgtg gctcgtttgg aattgctcaa acgccggacc 1140 gtcgtaacag tctatggagg cctagactca aagaccacct actgtgccac tggtgtggcg 1200 gagttggaaa accccttccg catagtcacg aaagtgacga caacgggagg gtggtcaggc 1260 tctccactct accacaagga cgcgatcgtc gggttgcact tgggtgcgag accatctgcg 1320 ggggtcaata gagcgtgtaa cgtagctatg gccttcaggg ttgtgcggaa atttgtcact 1380 gtcgagaaca gtgagttata tcccgaccaa agcagtggcc ccgcccgaga gctcgatgct 1440 gagacgtata cggaaaggtt ggagcaagga gttgctttca ctgagtacaa tatatctggc 1500 attacggtga aaacctccga ccgagagtgg actacaactg aggcgttgcg tgtcgcaaga 1560 tacaaaccct tgggtggagg aaaagcatgg ggtgatagtg atgacgagga cacccaggaa 1620 actgcaatcc ggcctttaaa ctaccagcgg gcgggctccc tacggggcag tccgcccttg 1680 gccaacttat cgagtacgcg ggctacgtct ggcgtgacga aggaatcatc aattccagcg 1740 gcatgccttt ccgatccgct ggaaagtcga gttgccggtt tagagaagct gtgtgcagag 1800 cggttcacag agatgttcga gctgctgaga cagagttccc agaactcaaa gagctcgcct 1860 ggccaagccg cggatcaaaa gcagaaatcg gatcgctcct cttccaagcc ggcaggtttg 1920 agagagtcga agcgcccgtc aatctgcaat tggcaatcac taacctccaa gcccagtacc 1980 cgaggtccag accccgctcc tgcttccgca gagagccctg gtgtcgtgag gacttcgtcg 2040 cagaaatcga aaagatcgcg cactcggggg aaatcaacct caaagcaagt cccggcgtcc 2100 ccctcgccga aatcggggtc agcaaccagc aagtaattga cgtggcctgg cccttggtgt 2160 gtgaggctgt ggtggaaagg ctccatgcct tggcatccgt agacccgcgc cacgacgact 2220 ggtctccaga agaactcgtg aaaagaggat tgtgtgatcc agtgcgactt ttcgtcaaac 2280 aggaacctca ttctcggcag aagattgaac aaggtcgctt ccgacttatc tcttccgtct 2340 cactcgtaga tcaactggta gaacgcatgc ttttcggacc ccagaatact acagaaattg 2400 ctctgtggca ttcaaatccc tctaaacccg ggatgggtct gtcgaaagct agccaagtcg 2460 cgctgttatg ggaggatttg gcgcgtacga accagaccca cccgggtgcc atggctgaca 2520 tctcagggtt tgactggtcc gttcaggatt gggaactctg ggctgacgta tctatgagga 2580 ttgagctagg ctcgtttcca gcgttgatgg cgaaggcagc tatatcgcgg ttttactgct 2640 tgatgaatgc taccttccaa ttaacgaatg gagagctctt gacccaggaa ctgcccggtc 2700 tcatgaagtc cgggtcgtac tgtacctcca gctccaactc ccgcattcgc tgccttatgg 2760 ctgagctcat cggctcgcct tggtgtatcg caatgggaga tgattctgtt gagggttggg 2820 ttgatgacgc tcccaggaaa tattcagcac taggccatct ctgcaaagag tatgaagcgt 2880 gtccggtgct ccccgatgga gatttgaagg aggtgagctt ttgctcccat ctcatctcta 2940 agggtcgagc agagctggag acgtggccca agtgtctgtt tcgatatctc agtggaccac 3000 atgatgtgga aagcttggag atggagctaa gctcttctcg ccgctggggc cagatcgtca 3060 gatacctccg ccggattggc cgggtctccg aaaatgatgg tgaggaaagg agcagcagcg 3120 aaagccccgc aacaaccaaa acccaaggct cagcagcagc ctgggggccg ccgcaggagg 3180 cgtggccggt cgatggagcc agtctctcga cctttgaacc ctccagcagc ggttggttcc 3240 accttgaagg ctggtagagg caggactgct ggtgtgagtg actggtttga caccggcatg 3300 atcaccagtt acctaggtgg ttttcagcgc acagctggaa ctaccgactc ccaggtattc 3360 attgtgtcac ctgctgcatt ggaccgtgtt ggaaccatag ctaaggcgta cgcgttgtgg 3420 agacctaagc attgggaaat cgtgtatctc cccagatgtt ctactcagac agatgggtcg 3480 attgaaatgg gatttctctt agattatgca gatagcgtcc caaccaacac ccgaactatg 3540 gcctcctcta cctccttcac gacttcaaac gtgtggggag gcggagatgg cagcagtttg 3600 ttgcacacgt ccatgaagtc catgggcaac gctgttacga gtgctcttcc ttgtgatgag 3660 ttctcgaaca agtggtttaa gttatcttgg agcactcctg aggaatcgga gaacgcccat 3720 ttgactgata cctatgttcc ggcgcgcttc gtggtgaggt ctgacttccc ggtagtcaca 3780 gctgaccaac ctggtcatct ttggctccgg tccaggatct tactcaaggg atcggtttcc 3840 ccttctacaa atttgtagtt aagtaccgca gggatgacaa acctgtatag cagtgtccgc 3900 gcttggtgga gtcgcgctcg tccacttgga aatctaactc caaagctttg cttgaagatt 3960 gacggattgg tattatctcc gtaagtatac cgaccactgg ctgggctcgt cacccctcct 4020 ttgtgtctca caaacgacga atctgcgctc ggcaaatgac aggatcatgg ccggggcagg 4080 tgc 4083 //