Dbfetch
ID AB040446; SV 1; linear; genomic RNA; STD; VRL; 4210 BP. XX AC AB040446; XX DT 03-OCT-2000 (Rel. 65, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 5) XX DE Ryegrass mottle virus genes for P1, protease and RNA-dependent RNA DE polymerase, hypothetical protein, coat protein, complete cds. XX KW coat protein; P1; protease and RNA-dependent RNA polymerase. XX OS Ryegrass mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4210 RA Zhang F.Y., Toriyama S.; RT ; RL Submitted (21-MAR-2000) to the INSDC. RL Shigemitsu Toriyama, Tokyo University of Agriculture, Faculty of Applied RL Bioscience; Sakuragaoka 1, Setagaya-ku, Tokyo 156-8502, Japan RL (E-mail:torico@ nodai.ac.jp, Tel:81-3-5477-2537, Fax:81-3-5477-2668) XX RN [2] RA Zhang F.Y., Toriyama S., Takahashi M.; RT "Complete Nucleotide Sequence of Ryegrass Mottle Virus: A New Species of RT the Genus Sobemovirus"; RL J. Gen. Plant Pathol. 67:63-68(2001). XX DR MD5; a6ba7a1d5161afc8b06ef7848b7e3780. DR EuropePMC; PMC3791421; 23830075. XX FH Key Location/Qualifiers FH FT source 1..4210 FT /organism="Ryegrass mottle virus" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:119910" FT CDS 100..501 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="P1" FT /db_xref="UniProtKB/TrEMBL:Q9E965" FT /protein_id="BAB15933.1" FT /translation="MPSVVIEVCSYDEETGDCELESTSKIFTSNFDGTYVLYTHSSGPK FT YAGSTVTLVCPHCGVSEQATFPTRGLSSNWGHHGPHDLRLDCKARHWHGTCEVIPSSEQ FT ESRVASDGVFEPGLTHITTTRGQSWTRHH" FT CDS 643..3486 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2" FT /product="protease and RNA-dependent RNA polymerase" FT /db_xref="GOA:Q9E964" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q9E964" FT /protein_id="BAB15934.1" FT /translation="MYGSIVSMVVQAALAFLLSKDPESRTAVRGLLASLTGTALILGWQ FT LLCVLRAWLATSLEKEPEAPKDSWIDLCGPPRFDPSKGVYGEVLIDGKQHRVVIQPDFW FT PLLRSAINIDRDEAAVANSIVSSVAPGKEPGSLVCIQAKDGKVIGMGARVHCGPATVLV FT TAGHVLKKGMIADLYLAKYSVSSKEGKRVLMDPTWKIEYGSLNKEADVISVQVPAAVWS FT RLGGPPPACGSLLLKYQSSPMVGRLPGSYNPRKVLRLQMAICLWPIHAQPVQGGAGTPL FT YAGSDIVAIHRRWEDIGVKNLATNLSIFHANCESSENGEQGAREIDAEEWISREVTPTD FT VYIAGRGKYRVAGDEFSHSSYDPLAFSKYKKERGEMTWADMVEGDLDWDAREESTGNDI FT PLNCQQAASKCSSPCVTCPESSGVTEKSSPQQACPSLTVEDRVSNLEKLLERVLTSSAE FT TQSNISVISQTLVGLKEARKQKELVCSSRQADSAPQKPPTTSTARAENLSENTPGPSSE FT PAFGGETWNSESLKEKIQEIAQRDIKRDSSPGVPLSLIGTTNGAVLDSSMTLVVEAVWA FT RLEALSRIELSPDVTPPELIQLGLCDPVRLFIKQEPHPLRKVRTGRLRLISSVSLLDQL FT VERVLFGFQNNLEISRWKQCPSKPGMGLTSKEQSDALWDELKFKSTLAPAAEADISGFD FT WSVQHWELMADVEMRIRLGDFSNLAARAARNRFTCLSNSVFQLSDGTLISQGLPGLMKS FT GSYCTSSSNSRIRCLMAKIIGSRWCIAMGDDSVEGWVDNAVEKYHALGHECKEYSACAR FT TYVSGSGEQTLQTVNFCSHELSEGKCHLTTWSKTLFRFFHSTAPCIRSLEMELAGSPQW FT PKIYRYLRRVGLAPDKDGKEEGQIGQPSNRFEGEIPEETTEKQRPTTHQTGYTGFSAGR FT DGDPDYLSGTPSCNSVW" FT CDS 1890..2423 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF3" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q9E963" FT /protein_id="BAB15935.1" FT /translation="MSGIVWSDGEILTTTGMPLIDCGRSRVKFRETARTSTNELCRNAE FT QHFGDLADLSWPERGSKAERVSLLFQAGRFRPTEAPDNLDSACRELEREYPRSKQRACL FT WGGNLELRKPQRKDPRNRAKGHQAGLQSRGPPQLDWNYKWGSPGLLHDLGCGGCLGATR FT GPFPNRTKPRCDSS" FT CDS 3305..4012 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:Q9E962" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:2IZW" FT /db_xref="UniProtKB/TrEMBL:Q9E962" FT /protein_id="BAB15936.1" FT /translation="MARKKGKSASQVIVLKEKSRKKRQKSRGQQPTRQVTPVSAPAAMG FT TQITYRGPQVVTQYGDITPAKNSGSLVRVTSSATAGTEVSGTVLFNVRNATELPWLSGQ FT GSRYSKYRVRYAHFTWEPIVGSNTNGEVAMAMLYDVADVTSITIERLMQTRGGTWGPIW FT SPTRKRLSYDPEHASLPWYLSGVSSGAAAGNIQTPFQIAWAAQSSLVSTTLGRIMAEYL FT VELTDPVDVTINQ" XX SQ Sequence 4210 BP; 1024 A; 1061 C; 1192 G; 933 T; 0 other; acaaatagag ttattaaatt aactctattg aacccgttat ccggtgatat aggacatctg 60 tgaactaaca tcacaataat cagttagccc cctcgattta tgccttcagt ggttatcgag 120 gtttgctcat acgacgagga gacaggagat tgtgaacttg agagtacgtc gaagatattc 180 accagtaact tcgacgggac ttacgtccta tatactcaca gttccgggcc gaaatacgcc 240 ggatcaactg tcacactcgt ctgccctcac tgcggggtga gtgaacaagc gacgttcccg 300 accagaggcc tttcaagcaa ctggggtcac cacgggccgc acgacttacg acttgattgt 360 aaggcgcggc actggcacgg aacgtgcgag gtcattccct cctctgagca agagtcgcgt 420 gtagcgtctg acggggtttt cgaaccaggt ctaacgcaca tcaccacgac tcgagggcag 480 tcttggacta gacatcatta gtccctccca gttctcgctg ggagtcccgc agcctggcta 540 cgggaaatat cggtggggtt gatcagacct acacctcttc gagaaaagcg ctcttcgagt 600 actccctcgg cagactattc tgttgcgtct cccatagtga agatgtacgg gtcaatagta 660 agcatggtgg ttcaggcggc gctcgctttc ctactgtcca aggacccaga gtccaggact 720 gcggtgagag ggctgctagc atcactaacg gggacggctc tgatcctggg gtggcaactg 780 ctgtgcgtct tgcgcgcttg gctagcaacc tctctggaaa aggaaccgga agctccgaaa 840 gactcctgga ttgatctgtg tggtccgcca cgctttgatc catcgaaagg agtttatgga 900 gaggtgctca tcgatgggaa gcagcatcgg gttgtgatcc aacccgattt ctggcctctt 960 ttacggtctg cgataaatat agatcgtgat gaggctgctg tggctaattc catcgtctct 1020 tcggtggcac cggggaaaga gccaggctct ctagtttgca tccaagcaaa ggatggcaaa 1080 gtgattggga tgggggctcg agtccactgc ggacccgcca ctgtcctcgt caccgccggt 1140 catgttctga agaagggcat gattgcagac ttatacctgg cgaagtactc tgtgtcgagt 1200 aaagagggaa agcgtgtcct gatggacccg acctggaaga ttgaatacgg ctccctgaac 1260 aaggaggctg atgtgatatc ggtacaggtc cccgcggctg tgtggtctcg ccttggtgga 1320 ccgccgcccg cgtgcggaag cctactgtta aagtaccagt cctcgcctat ggtggggagg 1380 cttccgggct cctacaatcc tcgcaaggtt ttgcgactcc agatggcaat atgtctgtgg 1440 cccattcatg ctcaacccgt ccagggtgga gcggggacac ccctgtacgc agggtcagac 1500 attgttgcca ttcaccgaag atgggaggat ataggcgtca agaatttggc gacgaacctc 1560 tccattttcc atgcaaactg tgaatccagt gaaaacggag agcagggagc gcgcgagatc 1620 gacgctgagg aatggatatc tcgagaggta actccgacgg acgtgtacat tgcaggccga 1680 gggaaataca gagttgctgg agatgaattc tcccactcaa gttatgatcc tctggctttc 1740 tctaagtaca agaaggagag aggtgagatg acgtgggctg atatggtgga aggcgatctt 1800 gattgggacg cccgtgaaga atccacagga aatgatattc ctttaaactg ccagcaggcg 1860 gcgagcaagt gctcgtcgcc gtgcgtgaca tgtccggaat cgtctggagt gacggagaaa 1920 tcctcaccac aacaggcatg cccctcattg actgtggaag atcgcgtgtc aaatttagag 1980 aaactgctag aacgagtact aacgagctct gccgaaacgc agagcaacat ttcggtgatc 2040 tcgcagacct tagttggcct gaaagaggct cgaaagcaga aagagttagt ttgctcttcc 2100 aggcaggcag attccgcccc acagaagccc ccgacaacct cgacagcgcg tgccgagaac 2160 ttgagcgaga atacccccgg tccaagcagc gagcctgcct ttggggggga aacttggaac 2220 tcagaaagcc tcaaagaaaa gatccaagaa atcgcgcaaa gggacatcaa gcgggactcc 2280 agtccagggg tccccctcag cttgattgga actacaaatg gggcagtcct ggactcctcc 2340 atgaccttgg ttgtggaggc tgtctgggcg cgactcgagg ccctttcccg aatagaacta 2400 agccccgatg tgactcctcc tgagttgata caactaggtc tttgcgaccc agtgcgtctc 2460 ttcataaaac aggagcccca tccactcagg aaagttcgga ctggcaggtt gaggctgatt 2520 tcatcggtat ccctgttgga ccaactggtt gagagggttc ttttcggttt tcagaataac 2580 ctcgagataa gccgatggaa gcagtgtcca tcgaaacccg gaatgggtct cacttctaag 2640 gagcaatccg atgcgttgtg ggacgagctg aagttcaagt ccaccctagc ccccgcggct 2700 gaggcggaca tatcgggatt cgattggtca gtgcaacatt gggagctaat ggcggatgtc 2760 gaaatgagaa ttcgactcgg agacttcagc aaccttgctg caagggctgc taggaacagg 2820 tttacttgtt tgtcgaactc ggttttccaa ctgagtgatg gcaccctgat ttctcaggga 2880 ctaccaggcc taatgaagtc cgggtcttat tgcacttcga gctcaaattc acggataaga 2940 tgcctaatgg cgaagatcat cggctcacga tggtgtatag ccatgggtga tgattccgtg 3000 gagggttggg ttgacaatgc tgtagaaaag tatcatgcac ttggtcatga gtgtaaagaa 3060 tactcagcat gcgcccggac atacgtgagc gggagcggag aacaaaccct tcaaacggtt 3120 aatttctgct cgcacgagtt gtccgagggt aagtgtcatc ttacgacctg gagcaaaacg 3180 cttttccgat tcttccatag tacggctccg tgcattagga gtctggaaat ggaattagcg 3240 ggcagccccc agtggcccaa aatctatcgg tacctgcgtc gggtgggctt agcgcccgac 3300 aaagatggca aggaagaagg gcaaatcggc cagccaagta atcgttttga aggagaaatc 3360 ccggaagaaa cgacagaaaa gcagaggcca acaacccacc agacaggtta caccggtttc 3420 agcgccggcc gcgatgggga cccagattac ttatcgggga ccccaagttg taactcagta 3480 tggtgacatc acccccgcca agaactctgg ctctttagta cgcgtcacat ccagtgccac 3540 cgccggcacg gaggtgagcg gcacggtgct ctttaacgta cgcaatgcga ctgagctacc 3600 gtggctatct gggcaagggt cccgctattc gaagtacagg gtgaggtatg cacacttcac 3660 ctgggaacca attgtgggat ccaacaccaa tggcgaggta gccatggcta tgctgtatga 3720 tgttgctgat gtgactagca tcactatcga gcgactgatg cagacgagag gtggaacttg 3780 gggacctatc tggtctccga ctaggaagcg gctcagttat gaccctgagc acgcttctct 3840 accttggtac ctaagtggag tctcctcagg cgccgcggca ggtaatatcc agactccctt 3900 ccagatagct tgggctgccc aatcttcatt ggttagcaca acgctaggca gaataatggc 3960 tgagtacttg gtggagttga ccgatccggt tgatgtcaca atcaaccagt gagacctgag 4020 ctcaaggtta acgagcgacc cttgggctgg gggtatataa atacgcaatg ccacttcggt 4080 gacaggcgcc gggcagccgc ctacatgggg gttaatccag agtccctgaa gactataaac 4140 tcgaagtccc agatgactct aaactcgtga actgtcggca cacctagcgt aggggcccgg 4200 gggttttcgt 4210 //