ID AB038150; SV 1; linear; genomic RNA; STD; VRL; 5708 BP. XX AC AB038150; XX DT 12-AUG-2001 (Rel. 68, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Soybean dwarf virus genomic RNA, complete genome, strain:DP. XX KW . XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5708 RA Terauchi H., Kanematsu S., Hidaka S.; RT ; RL Submitted (08-FEB-2000) to the INSDC. RL Hidetaka Terauchi, Tohoku National Agricultural Experiment Station, RL Department of Crop Breeding; Akahira 4, Morioka, Iwate 020-0123, Japan RL (E-mail:tera@tnaes.affrc.go.jp, Tel:019-643-3524) XX RN [2] RX DOI; 10.1007/s007050170040. RX PUBMED; 11722012. RA Terauchi H., Kanematsu S., Honda K., Mikoshiba Y., Ishiguro K., Hidaka S.; RT "Comparison of complete nucleotide sequences of genomic RNAs of four RT Soybean dwarf virus strains that differ in their vector specificity and RT symptom production"; RL Arch. Virol. 146(10):1885-1898(2001). XX DR MD5; c7a9ff027f20bcf2417abb9db20010f4. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5708 FT /organism="Soybean dwarf virus" FT /strain="DP" FT /isolate="M96-1" FT /mol_type="genomic RNA" FT /note="Soybean dwarf luteovirus" FT /db_xref="taxon:12049" FT CDS 127..1212 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="replicase" FT /db_xref="GOA:Q91QQ0" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q91QQ0" FT /protein_id="BAB62834.1" FT /translation="MFNFDSLVTATARVVKDFISFCYNRARHVYYALKRWLWELQGVFA FT AHDAFVDMCYDAMYGVEEFEWELQKQYSTAEIDVQLAEHEYKRLLADGAPLGSWPQPCA FT PQGSFRSSDDFDVAARAAEANPIVDPQPSLIKGCGDKSPSNPTRIEKFINLVQKKEVLS FT ATEALIKHTYEEQIGESPFGKWFNTLPNRMNYIKRAAAKQAKAAKRSKSVRQMVTEVNV FT IPDFISCCDVVQVDTGEKLPTKKDKEGNELPPEPKLKMFRRVKPEHVGDARKYICQHIR FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTEMLIKYAMVMVPLPRKSDIEAAKI FT VQSPAARQIRHELGVLNAEVF" FT CDS <1197..2810 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2" FT /product="replicase" FT /note="ORF2 is translated from ORF1 by frameshifting." FT /db_xref="GOA:Q91QP9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q91QP9" FT /protein_id="BAB62835.1" FT /translation="RRGFLEGLCSDSGFESPFSILGLPEIVVRSGAIPRKSRSTINYLS FT QFSLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNIPGIFSNLDYFRKSIVDK FT VGCPRTFSPEELAATYHSGKRTLYNAAVQSLKRKAVERSDANVTAFLKMEKHLMCKKIA FT PRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFDSPTVLSGYDSFKVGKIIANKWSKF FT KRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFNDPILKELLHWQTENKIMLFVEDKIL FT KFKVKGHRMSGDINTSSGNKLIMCGMMHYYFKSLGVKAELCNNGDDCVIICEKKDENKF FT SHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKQESISKDAHSLISM FT ASAEDVKTFMSATAQCGMILNSGVPVLDAFHKCLYKASGYKKVSQEAIERIVSFGTQDK FT LGLRKERVEEPITMDNRLSYWESFGVDPQTQVLVERYFDNLQVHIEPRGVKRLTPLLDK FT TLLSIASVARTSVSLPILSK" FT CDS 3018..3620 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF3" FT /product="coat protein" FT /db_xref="GOA:Q91QP8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91QP8" FT /protein_id="BAB62836.1" FT /translation="MVAVSNVTIQRRRNRRVARSAPRVQLMAIPTTTGATQRRRRQRRR FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK" FT CDS 3034..3603 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91QP7" FT /protein_id="BAB62837.1" FT /translation="MSQYNDDAIVESHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV FT KTSSRSTIRGTETPRSQAPSRSRSLS" FT CDS <3621..5090 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF5" FT /note="ORF5 is translated from ORF3 by readthrough" FT /note="readthrough domain (RTD)" FT /note="readthrough product" FT /db_xref="GOA:Q91QP6" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q91QP6" FT /protein_id="BAB62838.1" FT /translation="VDGEPGPKPGPDPTPPPAPPPEPTPAKHERFIVYTGTLSTLISAR FT QNSDSISLYSIRDQRIRYIENENANWANIKAQWYSQNSVEAVPMFIYPVPQGTWSIEIS FT CEGYQATSSTTDPHRGKSDGVIAYDDDQNKVWNVGVQNNVTITNNKADADWKYGHPDLT FT INGERFDQRQVVEKDGTISFHLVTTGPNASFFLVGPPVKKIAKYNFCISYGAWTDRDME FT FGLVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRSHRLQEMPPMREDFSEEDNSSSDSN FT TYKTDNSPMTVHFVKAGDKESYTTDQSDDVEPSPHDADVMKFSGFVGAKDRFVLQGADP FT IGPGDRSVRRFKPSATLKSAFHSGPTPDELYNAGAEQADHDFEHFVSRGKEKLQDEDPM FT AKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDPWSGIKIKPRLKDQDMRSTLSTGTL FT KGGSLKPKKELPPRFEPAPKSVLDRIRRRQV" XX SQ Sequence 5708 BP; 1700 A; 1236 C; 1320 G; 1452 T; 0 other; agtaaagttg acacctttac agaagtgttc ttgctagtaa gagttatttc cttgtgaagt 60 aatacaagaa cctcctcccg gcatcttcgt atcgtgtttg aggaatctct agtgttattg 120 ttagttatgt ttaacttcga tagcttagtt acagccaccg ctagggtggt taaagatttt 180 atttcttttt gctataatag ggcacggcat gtttattatg ccctaaaaag atggctctgg 240 gaactccagg gtgtatttgc tgcacatgac gcctttgtcg acatgtgcta tgacgccatg 300 tatggcgttg aggagttcga gtgggaactg caaaagcagt attccactgc agagatcgac 360 gtgcaattag ctgagcacga atacaagcgc ctacttgccg acggcgctcc actagggtca 420 tggccacaac catgtgcgcc ccaaggctca ttcaggtcgt ctgacgactt cgatgtagct 480 gctagggctg ctgaggcaaa ccctattgtg gacccacaac cctccttgat taaagggtgt 540 ggcgataaat caccttccaa tcccactagg attgagaagt tcatcaacct cgtccaaaag 600 aaggaggtac tttccgctac tgaggcgcta atcaaacata catatgaaga gcaaatcggt 660 gaatcaccat tcggaaagtg gttcaacact ctgcccaata gaatgaatta cataaagagg 720 gcagcagcaa aacaagccaa ggcggctaaa cgatctaaat ctgtccgcca aatggttacc 780 gaggtaaacg tcattcccga ctttatctct tgctgtgatg ttgtccaggt ggacactggt 840 gaaaagctcc ctactaagaa agataaagaa gggaatgagt tgccacctga gcctaagctt 900 aaaatgttta gaagggtgaa gcctgagcat gttggtgatg ccaggaaata catctgtcaa 960 catattcgca acaataatat gaggttgata gacggctctg atgtttctca tgcaaccatc 1020 aaccgatatg cgctcaagtt ttgcgaagac ttggagcttg atatgaccag cactgaaatg 1080 ctcatcaaat atgctatggt catggtccca ctccctcgaa aatctgatat tgaggctgct 1140 aaaatcgtcc aatctcctgc tgccaggcaa ataaggcatg agttgggcgt gcttaacgcc 1200 gaggtttttt agaggggctc tgctccgact ctggttttga atccccgttt tctattttgg 1260 ggttgccaga gatcgtggtg cgaagtgggg ctatccctag gaagagtcgt agtactatta 1320 attatttgag tcagtttagt ttaggtctag attaccaatg ccccaatccc agtttgcaca 1380 acgcattggt ggcggttgaa cgtagagtgt tcaccgttgg gaaaggaaat gaggtagtgc 1440 taccttacaa gaacatacca ggaatcttct ctaatcttga ttatttccgc aaatctattg 1500 tggacaaggt tggttgcccc aggacgttct cccctgaaga acttgcagca acgtatcact 1560 ctggtaagag aacgttgtat aatgctgctg ttcaaagtct taaacgtaag gctgttgaga 1620 ggagtgacgc gaatgtgaca gctttcctta agatggagaa gcaccttatg tgtaagaaga 1680 tagcacccag gttgatatgt ccccgcaaca aaagatataa tgttgaattg ggacgtcgat 1740 tgaaattcaa tgagaagaaa ttcatgcatg caatcgactc aacttttgat tccccaactg 1800 tattaagtgg atatgacagt tttaaagttg ggaagataat agccaataaa tggtcgaaat 1860 tcaaacgacc agttgcaata ggtgttgatg caagcagatt tgatcaacat gtgggggtag 1920 aagcactcca atgggagcac tcaatctata acggtgcatt taatgatccc attttgaagg 1980 agttgctaca ctggcaaaca gagaacaaaa taatgctgtt tgttgaagac aaaatcctca 2040 agttcaaggt caaaggacac agaatgtccg gtgacattaa cacctcttct ggcaacaaat 2100 taatcatgtg tggtatgatg cactactact tcaagtcact tggagtcaaa gccgaactct 2160 gcaataacgg cgatgattgt gttatcatat gcgagaagaa agatgaaaat aagttctcac 2220 acatgcatag ctggtttaaa gactatgggt ttgacatgca gattgagact cctgtctaca 2280 agattggaca gatagagttt tgtcaaagta aaccagttaa aatcaatggc tattatagaa 2340 tggtgcgtaa acaagaaagc atatccaaag acgcccattc cctcatttcc atggcatcag 2400 ctgaagatgt caaaacattt atgagtgcca ccgctcaatg cgggatgatc ttgaatagtg 2460 gagtacctgt tcttgatgct tttcacaaat gcctatacaa agcatcgggg tacaagaaag 2520 tatcgcagga agcgatcgag aggatagtct ccttcggaac gcaggacaaa ctcgggctca 2580 ggaaagagcg agttgaagaa ccaataacga tggataatag gttgagttat tgggagtcct 2640 ttggggttga cccgcagaca caggtccttg tcgaacgata ttttgacaat ctgcaggtcc 2700 atatcgaacc ccgcggcgta aagagattga cgcctttact cgataaaact ttgctttcaa 2760 ttgcgagtgt agcacgaaca tctgtgtcgc taccaatact ttcaaaatag aagcactcat 2820 aatcaccata gtagttatag tactagtagt agttagctgt ttagattacg ctagttcgta 2880 caagtaagtt gcaacggatt accgattttt atctgggttt gctatcggct ttatagctag 2940 cataccaata tcaatattgg caatttactt tgtttaccta aaaatttcaa agaatctgag 3000 aggaatcatc aacgaatatg gtcgcggtta gcaatgtcac aatacaacga cgacgcaatc 3060 gtagagtcgc acgaagcgct ccacgagttc agctcatggc tattccaacg accaccggcg 3120 caacacagcg cagaagaaga caacgacgac gaaggagaaa taatagagga ggaggcaata 3180 tttccggagg atcaggcaag gctcacacat tccagttttc gaaggacggc atcaatggca 3240 gttccaaggg aactatcact ttcgggccgt ctttatcaga gtgcaagcca ctctctgatg 3300 gaatactcaa ggcctaccat gaatataaga tcacgagtat cttattacag ttcatctccg 3360 aggcctcttc cacctcgtca ggctccatcg cttatgagct tgacccacac tgcaagtact 3420 ccgaaattca atcgctactc aataaattct caattacaaa gagcggttcg aaacgattcc 3480 ccaccaaggt tatcaatggc ctcgaatggc atgataccag tgaagaccag ttcaaggtcc 3540 actataaggg gaacggagac gccaagatcg caggctcctt caagatcacg atcgttgtct 3600 taactcagaa tcccaaatag gtagacggag aaccggggcc gaaaccaggt ccggacccca 3660 cacccccacc agcaccacca cctgaaccga cgccagccaa acatgaaaga ttcattgttt 3720 ataccggtac attgtcaaca ctcatcagtg ctcgacaaaa ctcagacagt atatcactct 3780 actcgattag agaccagaga atcagatata ttgaaaacga gaatgcaaac tgggcgaaca 3840 tcaaagcgca atggtattca cagaattctg tggaagcagt gccaatgttt atctacccag 3900 ttccgcaagg tacttggtca attgagatct catgtgaagg ctaccaggcg acatcaagca 3960 ccacggaccc ccaccggggg aagtccgatg gagtgattgc ttatgatgat gatcaaaata 4020 aggtgtggaa tgttggtgtg caaaataatg taaccataac caacaacaaa gccgatgctg 4080 attggaaata cggccatcct gatttaacaa tcaatggtga acgttttgac caaaggcaag 4140 tagtcgagaa agatggaaca atctcgttcc atttagtaac tactgggccc aacgcgagtt 4200 tctttttagt cggccctccc gttaagaaga ttgccaagta taacttctgc atatcatatg 4260 gtgcttggac tgatcgcgac atggagtttg gtttggtctc tgttgttctc gacgaacatt 4320 tagagggtgt tagaggttct cagtacgtta ggaaaacgct aagaccaggt catattagcg 4380 tcaatcgttc ccaccgattg caagaaatgc ctcccatgcg agaggatttc agtgaggaag 4440 ataatagtag tagtgatagt aatacatata aaacagacaa ctctcccatg accgttcact 4500 ttgtaaaagc aggtgacaag gagagttata caacagatca atcagacgat gttgaaccct 4560 caccccatga tgctgatgtc atgaagttct ccgggtttgt tggagccaaa gacaggtttg 4620 tgttgcaagg agctgatcca atcggccctg gtgatagatc tgtgcgtcgc ttcaaaccgt 4680 ctgctacctt aaagtctgca ttccattcgg gaccgactcc tgatgagttg tataatgctg 4740 gagctgaaca agcggatcac gacttcgaac actttgtctc ccgaggcaaa gaaaagctac 4800 aggatgaaga tccaatggct aaactcgaaa gagaggctga ggacttaaaa cctgatagtg 4860 acaacgaaga taacgattat gatcgaaccg ctcctgtgtt caacccagca gatggtgacc 4920 cttggtccgg cattaaaatc aagccaagat taaaagatca agacatgagg tctaccttaa 4980 gcactggcac cttgaaaggt ggttcactga aaccgaagaa agaactacct cctaggtttg 5040 agccagcgcc aaagtctgtt ttagatagaa ttagacgtag gcaagtctaa tcttgcacca 5100 atatagaagt agttagcgct ttccattatt atttatagga gccaaatttg gtgagtcccg 5160 atcgatggat cctggtaaac aggtgcggtg aacaaaaagc cggtaatctc ggggagatgt 5220 ctactcccgt cgtatcactt tcggttgcat atccaaagaa taaccctata cttaataact 5280 aaaaattaga tagtttccgc ctctcttgca aaccacatgc aagatgcgag cttgtgggga 5340 gtaccttccc ttgaataagg aaggttgaaa gtttctggtt cccaaaccat tgatcaaaat 5400 tggctctgct tctggtgatt acactgccgc tgaatcaaca gcgtaaacaa atttttactg 5460 gctactccgt gaaaagagag tggctggtac gcccctttga tggcgttaaa tgaaagcgta 5520 ggttttacga caccctctgc caaggacagc caaccttgcg aagtcgggag aatacccgat 5580 agactgtggt ctagtattaa aatgactcga gggctcttcc tcgttaaaaa gggggcgacg 5640 gcaggaaact gctgtcatta ggcgaaagcc tctttgttgt taaggtggcc atcaggtcca 5700 cctgcccc 5708 //