ID AB038149; SV 1; linear; genomic RNA; STD; VRL; 5708 BP. XX AC AB038149; XX DT 12-AUG-2001 (Rel. 68, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Soybean dwarf virus genomic RNA, complete genome, strain:DS. XX KW . XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5708 RA Terauchi H., Kanematsu S., Hidaka S.; RT ; RL Submitted (08-FEB-2000) to the INSDC. RL Hidetaka Terauchi, Tohoku National Agricultural Experiment Station, RL Department of Crop Breeding; Akahira 4, Morioka, Iwate 020-0123, Japan RL (E-mail:tera@tnaes.affrc.go.jp, Tel:019-643-3524) XX RN [2] RX DOI; 10.1007/s007050170040. RX PUBMED; 11722012. RA Terauchi H., Kanematsu S., Honda K., Mikoshiba Y., Ishiguro K., Hidaka S.; RT "Comparison of complete nucleotide sequences of genomic RNAs of four RT Soybean dwarf virus strains that differ in their vector specificity and RT symptom production"; RL Arch. Virol. 146(10):1885-1898(2001). XX DR MD5; 2df2c3be3c31c86e543632862cb29670. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5708 FT /organism="Soybean dwarf virus" FT /strain="DS" FT /isolate="HS97-8" FT /mol_type="genomic RNA" FT /note="Soybean dwarf luteovirus" FT /db_xref="taxon:12049" FT CDS 127..1212 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="replicase" FT /db_xref="GOA:Q91QQ5" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q91QQ5" FT /protein_id="BAB62829.1" FT /translation="MFNFDSLVTATARVVKDFISFCYNRARHVYYALKRWLWELQGVFA FT AHDAFVDMCYDAMYGVEEFEWELQKQYSTAEIDVQLAEHEYKRLLADGAPLGSWPQPCA FT PQGSFRSSDDFDVAARAAEANPIVDPQPSLIKGCGDKSPSNPTRVEKFINLVQKKEVLS FT ATEALIKHTYEEQIGESPFGKWFNTLPNRMNYIKRAAAKQAKAAKRSKSVRQMVTEVNV FT IPDFISCCDVVQVDTGEKLPTKKDKEGNELPPEPKLKMFRRVKPEHVGDARKYICQHIR FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTEMLIKYAMVMVPIPRKSDIEAAKI FT VQSPAARQIRHELGVLNAEVF" FT CDS <1197..2810 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2" FT /product="replicase" FT /note="ORF2 is translated from ORF1 by frameshifting" FT /db_xref="GOA:Q91QQ4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q91QQ4" FT /protein_id="BAB62830.1" FT /translation="RRGFLEGLCSDSGFESPFSILGLPEIVVRSGAIPRKSRSTINYLS FT QFSLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNIPGIFSNLDYFRKSIVDK FT VGCPRTFSPEELAATYHSGKRTLYNAAVQSLKRKAVERSDANVTAFLKMEKHLMCKKIA FT PRLICPRNKRYNVELGRRLKFNEKKFMHAIDSTFDSPTVLSGYDSFKVGKIIANKWSKF FT KRPVAIGVDASRFDQHVGVEALQWEHSIYNGAFNDPILKELLHWQTENKIMLFVEDKIL FT KFKVKGHRMSGDINTSSGNKLIMCGMMHYYFKSLGVKAELCNNGDDCVIICEKKDENKF FT SHMHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKQESISKDAHSLISM FT ASAEDVKTFMSATAQCGMILNSGVPVLDAFHKCLYKASGYKKVSQEAIERIVSFGTQDK FT LGLRKERVEEPITVDNRLSYWESFGVDPQTQVLVERYFDNLQVHIESRGVKRLTPLLDK FT TLLSIASVARTSVSLPILSK" FT CDS 3018..3620 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF3" FT /product="coat protein" FT /db_xref="GOA:Q91QQ3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91QQ3" FT /protein_id="BAB62831.1" FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR FT RRNNRGGGNLSGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE FT WHDTSEDQFKVHYKGNGDTKIAGSFKITIVVLTQNPK" FT CDS 3034..3603 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91QQ2" FT /protein_id="BAB62832.1" FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV FT KTSLRSTTRGTETPRSQAPSRSRSLS" FT CDS <3621..5090 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF5" FT /note="ORF5 is tarnslated from ORF3 by readthrough" FT /note="readthrough domain (RTD)" FT /note="readthrough product" FT /db_xref="GOA:Q91QQ1" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q91QQ1" FT /protein_id="BAB62833.1" FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLISAR FT QSSDSISLYSIRSQRVRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLT FT INGDKFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME FT FGMVSVVLDEHLEGARSSQYVRKTLRPGHISVNRSHRLQEMPPTREDFSEEDNSSSDNN FT TYKTDNSPMTVHLVKAGDEESYATDQTDDVEPILLDADVMKFSGFVGARDRFTLQGAEP FT IGPGDRTSRRFRPSGTLKAAFHSGPTPDELYNAGAEQADHDFEHFVSRGKEKLHGEDPM FT AKLEREAEDLKPDSDNEDNDYDRTASVFNPADGDPWSGIKIKPRLKDQDMRSTLSTGTL FT KGGSLKPKKEPPPKFVPAPKSVLDRIRRRQV" XX SQ Sequence 5708 BP; 1687 A; 1230 C; 1329 G; 1462 T; 0 other; agtaaagttg acacctttac agaagtgttc ttgctagtaa gagttatttc cttgtgaagt 60 aatacaagaa cctcctcccg gcatcttcgt atcgtgtttg aggaatctct agtgttattg 120 ttagttatgt ttaacttcga tagcttagtt acagccaccg ctagggtggt taaagatttt 180 atttcttttt gctataacag ggcacggcat gtttattatg ccctaaaaag atggctctgg 240 gaactccagg gtgtatttgc tgcacacgac gcctttgtcg acatgtgcta tgatgccatg 300 tatggcgttg aggagttcga gtgggaactg caaaagcagt attccactgc agagattgac 360 gtgcaattag ctgagcacga atacaagcgc ctacttgccg atggcgctcc actagggtca 420 tggccacaac catgtgcgcc ccaaggctca ttcaggtcgt ctgacgactt tgatgtagct 480 gctagggctg ctgaggcaaa ccctattgtg gacccacaac cctccttgat taaagggtgt 540 ggcgataaat caccttccaa ccccactagg gttgagaagt tcatcaacct cgttcaaaag 600 aaggaggtac tttccgctac tgaggctcta atcaaacata catatgaaga gcaaatcggt 660 gaatcaccat tcggaaagtg gttcaacact ctgcccaata gaatgaatta cataaagagg 720 gcagctgcaa aacaggccaa ggcggctaaa cgatccaaat ctgtccgcca aatggtcacc 780 gaggtaaacg tcattcctga ctttatctct tgctgtgatg ttgtccaggt ggacactggt 840 gaaaagctcc ctactaagaa agacaaagaa gggaatgaat tgccacctga gcctaaactt 900 aaaatgttta gaagggtgaa gcctgagcat gttggtgatg ccaggaaata catctgtcaa 960 cacattcgca acaataatat gaggttgata gacggttctg atgtttccca tgcaaccatc 1020 aaccgatatg cgctcaagtt ttgcgaagac ttggagcttg acatgaccag tactgaaatg 1080 ctcatcaaat atgctatggt catggtccca atccctcgaa aatctgacat tgaggctgct 1140 aaaatcgtcc aatctcccgc tgccaggcaa ataaggcatg agttgggcgt gcttaacgcc 1200 gaggtttttt agaggggctc tgctccgact ctggttttga atccccgttt tctattttgg 1260 ggttaccaga gatcgtggtg cgaagtgggg ctatccctag gaagagtcgt agtactatta 1320 attatttgag tcagtttagt ttaggtctag attaccaatg ccctaatccc agtttacaca 1380 acgcattggt ggcggttgaa cgtagagtgt tcaccgttgg gaaaggaaat gaggtagtgc 1440 taccttacaa gaacatacca ggaatctttt ctaatcttga ttatttccgc aaatctattg 1500 tggataaggt tggttgccct aggacgttct cccctgaaga acttgcagcg acgtatcact 1560 ctggtaagag gacgttgtat aatgctgctg ttcaaagtct taaacgtaag gctgttgaga 1620 ggagtgacgc gaatgtgaca gctttcctta agatggagaa gcatcttatg tgtaagaaga 1680 tagcacccag gttgatatgt ccccgcaaca aaagatataa tgttgaatta ggacgtcgat 1740 tgaaattcaa tgaaaagaaa ttcatgcatg caatcgactc aacttttgat tccccaactg 1800 tattaagtgg atatgacagt tttaaagttg ggaagataat agccaataaa tggtcgaaat 1860 tcaaacgacc agttgcaata ggtgttgatg caagcagatt tgatcaacat gtgggggtag 1920 aagcactcca atgggagcac tcaatctata acggtgcatt caatgatccc attctgaagg 1980 agttgctaca ctggcaaaca gagaacaaaa taatgctgtt tgttgaagac aaaatcctca 2040 agttcaaggt caaaggacac agaatgtccg gtgacattaa cacctcttct ggcaacaaat 2100 taatcatgtg tggtatgatg cactactact tcaagtcact tggagtcaaa gccgaactct 2160 gcaacaacgg cgatgattgt gttatcattt gcgagaagaa agatgaaaat aagttctcac 2220 acatgcatag ctggtttaaa gactatgggt ttgacatgca gattgagact cctgtctaca 2280 agattgggca gatagagttt tgtcaaagta aaccagttaa aattaatggc tattatagaa 2340 tggtgcgtaa acaagaaagc atatccaaag acgcccattc cctcatttcc atggcatcag 2400 ctgaagatgt caaaacattt atgagtgcca ccgctcagtg cgggatgatc ttgaatagtg 2460 gtgtacctgt tcttgatgct tttcacaaat gcctatacaa agcatcgggg tacaagaaag 2520 tatcgcagga agcgatcgag aggatagtct ccttcggaac gcaggacaaa ctcgggctca 2580 ggaaagagcg agttgaagaa ccgataacgg tggataatag gttgagttat tgggagtcct 2640 ttggggttga cccgcagaca caggtccttg tcgaacgata ttttgacaat ctgcaggtcc 2700 atatcgaatc ccgcggcgta aagagattga cgcctttact cgataaaact ttgctttcaa 2760 ttgcgagtgt agcacggaca tctgtgtcgc taccaatact ttcaaaatag aagcactcat 2820 aatcaccata gtagttatag tactagtagt agttagttgt ttagattacg ctagttcgta 2880 caagtaagtt gcaacggatt accgattttt atctggtttt gctatcggct ttatagctag 2940 cataccaata tcaatattgg caatttactt tgtttaccta aaaatttcaa agaatctgag 3000 aggaatcatc aacgaatatg gtcgcggtta gcaatgtcac aatacaacga cgacgcaatc 3060 gtagagccgc acgaagcgct ccacgagttc agctcatggc tattccaacg accaccggcg 3120 caacacagcg ccgaagaaga caacgacgac gaaggagaaa taatagagga ggaggcaatc 3180 tttccggagg atcaggcaag gctcacacat tccagttttc gaaggacggc atcaatggca 3240 gttccaaggg aactatcact ttcgggccgt ctttatcaga gtgcaagcca ctctctgatg 3300 gaatactcaa ggcctaccat gaatataaga tcacgagtat cttattacag ttcatctccg 3360 aggcctcttc cacctcgtca ggctccatcg cttatgagct tgacccacac tgcaagtact 3420 ccgaaattca atcgctactc aataaattct caattacaaa gagcggttcg aaacgattcc 3480 ccaccaaggt tatcaatggc ctcgaatggc atgataccag tgaagaccag tttaaggtcc 3540 actacaaggg gaacggagac accaagatcg caggctcctt caagatcacg atcgttgtct 3600 taactcagaa tcctaaatag gtagacggag aaccgggtcc gaaaccaggt ccagacccag 3660 caccccagcc aacaccaaca cccgaaccaa cgccagccaa acacgagaga tttatcgcgt 3720 acaccggtac gttgtccacg cttattagcg cgcgacagtc ttctgacagt atctcactct 3780 actccatccg tagtcagagg gttagatata tcgaagatga aaattccagt tggacaaaca 3840 tagatgcaaa atggtactcg cagaattctg ttgaggccat tccaatgttt gtttatccag 3900 tgcccgaagg cacttggtca attgagatat cttgtgaagg ttaccaggca gcgtcaagta 3960 catcagaccc ccatcgtggg aaatgcgatg gcatgattgc ttacgacgac gattcttcga 4020 aggtgtggaa tgttggtcag cagaataacg taaccattac caataataag gccgataatg 4080 attggaaata tggtcaccct gatctcacga tcaatggtga caaattcgat cagaatcaag 4140 tagtcgagaa agatggaatc atttcattcc atttagtaac tactggccca aacgcaagtt 4200 tctttctcgt cgctccagct gttaagaaaa cagctaaata caacttttgt gtatcatatg 4260 gagattggac ggatagagat atggagtttg gaatggtatc agtagtgctc gatgagcact 4320 tggagggagc aaggagttct cagtatgtta ggaaaacgct aagaccaggt catattagcg 4380 tcaatcgttc ccaccgattg caagaaatgc ctcccacgcg agaggatttc agtgaggaag 4440 ataatagtag tagtgataat aatacatata aaacagacaa ttctcccatg accgttcacc 4500 ttgtaaaagc aggtgacgag gagagttatg caacagatca aacagacgat gttgagccca 4560 tacttcttga tgctgatgtc atgaagttct ccgggtttgt tggagctagg gacaggttta 4620 cattgcaggg tgccgaacca atcggcccag gtgacagaac ctctcgtcgt ttcagaccgt 4680 ctggcacact aaaggctgcg ttccattcgg gaccgactcc tgatgagttg tataatgctg 4740 gtgctgaaca agcggatcat gacttcgaac actttgtctc ccggggcaaa gagaagctgc 4800 atggcgaaga tccaatggcc aaactcgaaa gagaggctga ggatttgaaa cctgatagcg 4860 acaacgaaga caacgattat gatcgaaccg cttctgtgtt caacccagca gatggtgacc 4920 cttggtcggg cattaaaatt aagcctaggt taaaagacca agatatgagg tccaccttaa 4980 gcactggtac cttgaaagga ggttcactga aaccgaagaa agaacccccc ccaaagtttg 5040 taccagcgcc aaagtctgtt ttagatagaa ttagacgtag gcaagtctag tcttgcacca 5100 atatagaagt agttagcgct ttccattatt atttatagga gccaaatttg gtgagtcccg 5160 atcgatggat cctggtaaac aggttcggtg aataaaaagc cggtaatctc ggggagatgt 5220 ctactcccgt cgtatcactt tcggttgcat atccaaaaaa taaccctata tttaataact 5280 aaaaattaga tagtttccgc ctctcttgca aaccacatgc aagatgcgag cctgtggaga 5340 gtaccttccc ttgaataagg agggttgaaa gtttctggtt cccaaaccat tgatcaaaat 5400 tggctctgct tctggtgatt acactgccgc tgagttaaca gcgtaaacaa atttctattg 5460 gctactccat gaaaagagag tggctaatac gcccctttga tggcgttaaa tgaaagcgta 5520 ggttttacga caccccctgt caagggcagc caaccttgcg aagtcgggag aatgcccgat 5580 agactgtggt ctagtattaa aatgacccga gggctcttcc tcgttaaaaa gggggcgatg 5640 gcaagaaact gctgtcatta ggcgaaagcc tctttgttgt taaggtggcc atcaggtcca 5700 cctgcccc 5708 //