Dbfetch
ID AB038148; SV 1; linear; genomic RNA; STD; VRL; 5841 BP. XX AC AB038148; XX DT 12-AUG-2001 (Rel. 68, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Soybean dwarf virus genomic RNA, complete genome, strain:YP. XX KW . XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5841 RA Terauchi H., Kanematsu S., Hidaka S.; RT ; RL Submitted (08-FEB-2000) to the INSDC. RL Hidetaka Terauchi, Tohoku National Agricultural Experiment Station, RL Department of Crop Breeding; Akahira 4, Morioka, Iwate 020-0123, Japan RL (E-mail:tera@tnaes.affrc.go.jp, Tel:019-643-3524) XX RN [2] RX DOI; 10.1007/s007050170040. RX PUBMED; 11722012. RA Terauchi H., Kanematsu S., Honda K., Mikoshiba Y., Ishiguro K., Hidaka S.; RT "Comparison of complete nucleotide sequences of genomic RNAs of four RT Soybean dwarf virus strains that differ in their vector specificity and RT symptom production"; RL Arch. Virol. 146(10):1885-1898(2001). XX DR MD5; d599baf6e86c772db7218b04a29e1510. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5841 FT /organism="Soybean dwarf virus" FT /strain="YP" FT /isolate="M94-1" FT /mol_type="genomic RNA" FT /note="Soybean dwarf luteovirus" FT /db_xref="taxon:12049" FT CDS 144..1229 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="replicase" FT /db_xref="GOA:Q91QR0" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q91QR0" FT /protein_id="BAB62824.1" FT /translation="MFNFDSLVSATAKVVKDFIHFCYNRARHVYYALKRWLWELQGVFA FT AHDAFVDMCYDAMYGVEEFEWELQKQFSSAEHDVLIAKHEFERLLRDGAPLRTWPQPCA FT PLGSFRSSDDFQIAAQEAENLSLMDPEPSLIKGSGDYSLDNPNRIEKFINLVQKKEVLS FT ATEQLIKHAYEEHIGEAPFGKWFNTLPSRMNYIKRAASKKAKAAKRSNSVRQMVNEVNV FT IPDFISICDVVQVDTGEKLPPKKDKDGESLEPEPKMKMMRRVRPEHFGDARSYIRQHIR FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTAMLVDYAMTMVPIPLKNDIERAKI FT VHSPAARQIRQELGVLNAEVF" FT CDS <1220..2827 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2" FT /product="replicase" FT /note="ORF2 is translated from ORF1 by frameshifting" FT /db_xref="GOA:Q91QQ9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q91QQ9" FT /protein_id="BAB62825.1" FT /translation="GFLEGLCSDSGFESPFSILGLPEIVVRSGATPRKSRSVISYLSQF FT TLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNKTGIFSNLDYFRDSIVNKVG FT CPRTHTPEELAATYHSGKRSLYNAAVQSLKKKAVERSDANVTAFLKMEKHLMCKKIAPR FT LICPRNKRYNVELGRRLKFNEKKFMHAIDSTFESPTVLSGYDSFKVGKIIANKWSKFKR FT PVAIGVDASRFDQHVGVEALQWEHSIYNGAFKDPILKELLHWQTDNRIMLFVEDKILKF FT KVKGHRMSGDINTSSGNKLIMCGMMHYYFKTLGVRAELCNNGDDCVIICERKDENKFQH FT MHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKPESISKDAHSLISMAS FT TEDVKTFMSATAQCGLILNSGVPILEAFHKCLFKASGYKKVSQEAIERIVSFGTQDKLG FT LRKERVDEPVTMDNRLSYWESSGVDPQTQVLVERYFDNLLVHIEPRGVKRLTPLLDKTL FT LSIASVARTSVSLPILSK" FT CDS 3035..3637 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF3" FT /product="coat protein" FT /db_xref="GOA:Q91QQ8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91QQ8" FT /protein_id="BAB62826.1" FT /translation="MVAVSNVAIQRRRTRRAARRAPRVQLMAIPTATSRPQRRGRQRRR FT RRNNRGGSFISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPFSDGILKAYHEYK FT ITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE FT WRDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK" FT CDS 3051..3620 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91QQ7" FT /protein_id="BAB62827.1" FT /translation="MSQYNDDALVGQQDALHEFSSWLFQRPPADHNAEDDNDDEGEIIE FT EEALFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRVSY FT YSSSPRPLPPRQVPSLMNLTHTASTPKFNRYSINSVSQRAVRNVSQPELSTASNGVIPV FT KINSRSTTRVTESPRSQAPSRSRSMS" FT CDS <3638..5188 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF5" FT /note="ORF5 is tarnslated from ORF3 by readthrough" FT /note="readthrough domain (RTD)" FT /note="readthrough product" FT /db_xref="GOA:Q91QQ6" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q91QQ6" FT /protein_id="BAB62828.1" FT /translation="VDGEPGPKPGPSPAPPPAPPPEPTPAKHERFIVYTGTLSTLISAR FT QNSDSISLYSIRDQRVRYIEDENANWTNIKAHWYSQSSVEAIPMFIYPVPQGTWSIEIS FT CEGYQATSSTTDPHRGKSDGMIAYDDDQTKVWNVGVQNNVTISNNKADADWKYGHPNLT FT INGERFDQNQVVEKDGTISFHLVTTGPNASFFLVGPAVKKIAKYNYCISYGAWTDRDME FT FGLVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRSHRLQDSFTPVEYVSDEDSSSNSSI FT VSNRPSTPDNDSDTQPLKVKLPSQTQLPPKGFLSRLSAKEKEQISSSKPSNVENQVGPL FT VAAYGYPSQTGVYDAAREILRAKEAAENLAELERDLKEINKLEPPDVIIQEEIPDFVPP FT SEKVHQESPEYVPPVWRNADQAVTVSSYEPPDWSRPANESGDPPKKGSLKGTLSKLGGS FT LRSGESSLRGSLRKTQDQSDLDYKLSKLNVLQRSQYQRILNNSGKTRARAYLDGLDLN" XX SQ Sequence 5841 BP; 1733 A; 1243 C; 1349 G; 1516 T; 0 other; agtaaagttg acacctttac agaagtgatc ttgcttgtaa gagttaattc atcaagagtt 60 aatacaagat ccacctcccg gcaccttcgt atcgtgtttg aggtatctct agtgtttggt 120 tgtttaaata ctaggtagtt ttaatgttta actttgatag cttagtgtcg gccaccgcca 180 aggtggtcaa agattttata catttttgtt acaatagggc gaggcatgta tattatgccc 240 tcaaacgctg gctctgggaa ctccagggtg tgtttgctgc acatgacgct ttcgtcgata 300 tgtgctacga cgccatgtat ggcgttgagg agtttgaatg ggagttgcag aagcaattct 360 caagtgctga acatgatgtg ctaatcgcca agcacgaatt tgagcgcctg ttaagggatg 420 gcgccccatt aaggacatgg ccacaaccat gcgctccctt gggtagcttc cgatcgtccg 480 atgacttcca gatagcagct caagaggctg aaaacctgtc cttaatggac ccagaaccct 540 ccttgattaa agggtctggt gactactcac ttgacaatcc taacaggatt gaaaagttca 600 tcaacctcgt tcaaaagaag gaggtacttt ccgccaccga acaattgatt aaacatgctt 660 atgaagagca tatcggtgaa gcaccattcg gaaagtggtt caacacattg ccctctcgga 720 tgaattatat taagagggcc gcttcaaaga aggccaaggc ggccaagaga tcaaactctg 780 tccgccaaat ggtaaacgag gtaaatgtca ttcctgactt tatctcaatt tgcgatgttg 840 tccaggtgga cactggtgag aaactccctc ccaagaaaga caaagacggg gagtcattag 900 agcctgaacc caaaatgaaa atgatgagaa gggtcaggcc cgagcatttt ggtgatgctc 960 gttcttatat aaggcagcat attcgcaaca acaacatgcg ccttattgac ggttctgatg 1020 ttagtcatgc caccatcaac cggtatgctc tcaagttttg cgaagactta gagcttgata 1080 tgaccagtac tgcaatgctg gttgattatg ctatgacaat ggtgcccatt cccctcaaga 1140 atgatattga aagggcaaag attgtccatt ctcctgctgc caggcagatt aggcaggagt 1200 tgggcgttct aaacgctgag gttttttaga ggggctctgc tccgactctg gttttgaatc 1260 cccgttttct attttggggt taccagagat cgtggtgcgt agtggagcta cacctaggaa 1320 gagtcgtagt gtaattagtt atctttcgca gtttacttta ggtctagatt atcaatgccc 1380 taatcccagc ttacataatg cattggtggc ggttgaacgt agagtgttca ccgttgggaa 1440 aggaaatgag gtagtgctac cttacaaaaa caaaactgga atattttcca atcttgatta 1500 ttttagagac tcaattgtca ataaagtcgg ttgtccaagg acccacactc ctgaggaact 1560 tgccgcaacg taccactctg gaaagagaag tttgtacaat gctgctgttc aaagcctcaa 1620 aaagaaggca gtcgaaagga gtgatgctaa cgtgacagct tttctcaaga tggaaaaaca 1680 tttgatgtgt aagaagatag cacccaggtt gatatgtccc cgaaacaaaa ggtataatgt 1740 cgaattggga cgtcgattga agttcaatga gaagaaattc atgcatgcaa ttgactcaac 1800 ctttgaatcc ccaactgttc ttagtggata tgacagtttt aaagttggga agataatagc 1860 caataaatgg tccaagttca agcgaccagt tgcaataggt gttgatgcga gcagatttga 1920 tcaacacgtg ggggtagaag cactccaatg ggagcactcg atttacaacg gtgcatttaa 1980 agatcccatt ttgaaggagt tgctacactg gcaaacagat aaccgaatta tgctgtttgt 2040 tgaagataaa atcctcaagt ttaaggtcaa aggacacagg atgtctggcg acattaacac 2100 ctcatctggc aacaaattga tcatgtgtgg tatgatgcac tactacttca agactcttgg 2160 agtcagagcc gaactctgca acaacggcga tgattgtgtc atcatatgcg agaggaaaga 2220 tgaaaacaaa ttccaacaca tgcatagctg gtttaaagac tatgggtttg acatgcagat 2280 tgagactcct gtctacaaga ttgggcagat agagttttgt caaagtaaac cagttaaaat 2340 taatggctat tatagaatgg tgcgtaaacc agagagcata tccaaagacg cacattccct 2400 catttccatg gcatcaactg aagatgtcaa aactttcatg agtgccaccg cccaatgcgg 2460 tttaatcttg aatagtggtg tacccattct tgaagctttt cacaaatgcc tatttaaagc 2520 ttcggggtat aagaaagtat cgcaagaagc aattgaacgt attgtctctt tcggaacgca 2580 ggacaagctc gggctcagaa aagagcgagt agatgaacca gtaacaatgg ataataggtt 2640 gagttactgg gagtccagcg gggttgaccc acagacacag gtccttgttg aacgatattt 2700 cgacaatctg ttggtccata tcgaaccccg tggcgtaaag agattgacgc ctttactaga 2760 taaaactttg ctttcaattg cgagtgtagc acgaacttct gtgtcgctac caatactttc 2820 aaaatagaag cactcatagt aaccatagta ataatagtat tagtggtagt tagtttatta 2880 gactacgcta gttcatacag ataaattgca acggattata aattcctatc aggttttgct 2940 tctggattca tatccagcat ccctgtatca atattggcaa tttattttgt ttacctaaaa 3000 atttcaaaga atctgcggga gataatcaac gagtatggtc gcggttagca atgtcgcaat 3060 acaacgacga cgcactcgta gggcagcaag acgcgctcca cgagttcagc tcatggctat 3120 tccaacggcc accagccgac cacaacgcag aggacgacaa cgacgacgaa ggagaaataa 3180 tagaggagga agctttattt ccggaggatc aggcaaggct cacacattcg tgttttcaaa 3240 ggacggcatc aatggtagtt ccaagggaag tatcactttc gggccgtctt tatcagaatg 3300 caagccattc tctgatggaa tactcaaggc ctaccatgaa tataagatca cgagtatctt 3360 attacagttc atcaccgagg cctcttccac ctcgtcaggt tccatcgctt atgaacttga 3420 cccacactgc aagtactccg aaattcaatc gctactcaat aaattcagta tcacaaagag 3480 cggttcgaaa cgtttcccaa ccagagctat caacggcctc gaatggcgtg ataccagtga 3540 agatcaattc aagatccact acaagggtaa cggagagtcc aagatcgcag gctccttcaa 3600 gatctcgatc aatgtcctaa cgcagaatgc taaataggta gacggagaac cggggccgaa 3660 accaggtccg agccccgcac ccccaccagc accaccacct gaaccaacac ctgcaaagca 3720 tgaacgattt atcgtgtaca ccggtacatt atcaacgctt atcagtgccc ggcaaaattc 3780 agacagtata tcactctact caatcagaga tcagagagtt cgatatatcg aggatgagaa 3840 tgcaaactgg acgaacatca aggcgcattg gtattcacag agttctgtgg aagccattcc 3900 tatgtttata tatccagttc cacaaggtac atggtctatt gaaatctcgt gtgaaggtta 3960 ccaggccaca tctagcacca cagaccccca tcgagggaag tcagatggta tgattgctta 4020 tgatgatgac caaacaaagg tgtggaatgt tggtgtgcaa aataatgtaa ccatatccaa 4080 taacaaagcc gatgctgatt ggaaatacgg ccacccaaat ttaacaatta acggtgaacg 4140 ttttgaccaa aatcaggtag tcgagaaaga tggaacaata tcgtttcatt tagtaactac 4200 cgggcccaac gcgagtttct ttcttgtcgg ccctgctgtc aagaagattg ccaagtataa 4260 ttactgtata tcttacggtg cttggacaga tcgcgatatg gaatttggat tggtttctgt 4320 tgttcttgat gaacacttag agggtgtaag aggttctcag tatgttagga aaacgctaag 4380 accaggtcat attagcgtca atcgctctca ccgattgcaa gacagtttca caccggtgga 4440 atatgtcagt gatgaagata gtagtagtaa tagtagtata gttagtaatc gaccatcaac 4500 tccggacaat gatagtgata cccagccgct taaggtcaag cttccgtccc agacgcagct 4560 acctcctaaa gggtttctat cacggttaag cgctaaagag aaagaacaga tttccagttc 4620 taaaccttcg aatgttgaaa accaagttgg tcctctggtt gctgcttatg gatacccatc 4680 tcagacgggt gtttatgatg ctgcaagaga gatactgcga gccaaagaag ctgcagaaaa 4740 cttggcagaa ctagaaaggg acttaaagga aatcaacaag ctagaaccgc cggacgttat 4800 aattcaggaa gaaatccctg actttgtgcc accttcggag aaagtacacc aggaaagtcc 4860 tgagtacgta cctccggtgt ggcggaatgc cgaccaggct gtgacggtct catcttatga 4920 gcctccagac tggagtcggc cagctaatga gtcaggtgat ccgcctaaga aaggctcact 4980 caaaggtaca ctctccaaac ttggagggtc gctaaggagt ggtgagtcct ctcttagagg 5040 tagcctccgc aagacgcaag atcaatctga tctagactat aaattgtcaa aacttaatgt 5100 tcttcaacga tcccaatacc aacggatatt gaacaactca ggtaaaacgc gtgcgcgagc 5160 atatctcgat ggtctcgatt taaattaata taggtagaag tgtgtttgcg ctttccatca 5220 cacgaaattg gagccaacca tggtgagttg ctgttgtggg atcctgggaa acaggttcgg 5280 tgaacaaaaa gccggtaatc tcgggcgttt gtcagacgcc gccgaatcaa cacagtatgc 5340 atatccatca ataacccaag ttacgtgtga ctaaaaatta gaattagttt accgcctctc 5400 ttgtaaacca catacaagac gtgagattgt ggagagtatt atcccttgaa taaggataat 5460 tgaaagtttc tggtttcaat ccattgatca aaattgacac tgcttctggt gattacactg 5520 ccgctggtga tacagcgtaa acaatttctg cttttcgctc tatgaaatga gagtgattag 5580 taaagtcttg ccgttcacat gtttatttga cggtaccagg cttcgcccct ttgatggcgt 5640 taaatgaaag cggagtaaac cgacaccacc ttaccaggtc gggttgacct ggggaaaccg 5700 ggaaaatacc cgggacactt ggtttagtgg agtttaaact cgagggctct tcctcgttaa 5760 aaagggggta gccaggttga aaactggcac tagggagaaa tccctctttg ttgttaaggt 5820 ggctttgtgt ccacctgccc c 5841 //