ID AB038147; SV 1; linear; genomic RNA; STD; VRL; 5853 BP. XX AC AB038147; XX DT 12-AUG-2001 (Rel. 68, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Soybean dwarf virus genomic RNA, complete genome, strain:YS. XX KW . XX OS Soybean dwarf virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5853 RA Terauchi H., Kanematsu S., Hidaka S.; RT ; RL Submitted (08-FEB-2000) to the INSDC. RL Hidetaka Terauchi, Tohoku National Agricultural Experiment Station, RL Department of Crop Breeding; Akahira 4, Morioka, Iwate 020-0123, Japan RL (E-mail:tera@tnaes.affrc.go.jp, Tel:019-643-3524) XX RN [2] RX DOI; 10.1007/s007050170040. RX PUBMED; 11722012. RA Terauchi H., Kanematsu S., Honda K., Mikoshiba Y., Ishiguro K., Hidaka S.; RT "Comparison of complete nucleotide sequences of genomic RNAs of four RT Soybean dwarf virus strains that differ in their vector specificity and RT symptom production"; RL Arch. Virol. 146(10):1885-1898(2001). XX DR MD5; 305969bb413f4482910363f98262cfd6. DR EuropePMC; PMC2583970; 18937850. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5853 FT /organism="Soybean dwarf virus" FT /strain="YS" FT /isolate="M93-1" FT /mol_type="genomic RNA" FT /note="Soybean dwarf luteovirus" FT /db_xref="taxon:12049" FT CDS 144..1229 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="replicase" FT /db_xref="GOA:Q91QR5" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q91QR5" FT /protein_id="BAB62819.1" FT /translation="MFNFDSLVSATAKVVKDFIHFCYNRARHVYYALKRWLWELQGVFA FT AHDAFVDMCYDAMYGVEEFEWELQKQFSSAEHDVLIAKHEFERLLKDGAPLRAWPQPCA FT PIGSFRSSDDFQEAAREAENLSLMDPEPSLIKGSGDYSLDNPNRIEKFINLVQKKEVLS FT ATEQMIKHAYEEHIGEAPFGKWFNTLPSRMNYIKRAASKKAKAAKRSNSVRQMVNEVNV FT IPDFISICDVVQVDTGEKLPPKKDKDGEPLEPEPKMKMMRRVRPEHYGDARSYIRQHIR FT NNNMRLIDGSDVSHATINRYALKFCEDLELDMTSTAMLVDYAMTMVPIPLKNDIERAKI FT VHSPAARQLRQDLGVLNAEVF" FT CDS <1220..2827 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2" FT /product="replicase" FT /note="ORF2 is translated from ORF1 by frameshifting." FT /db_xref="GOA:Q91QR4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q91QR4" FT /protein_id="BAB62820.1" FT /translation="GFLEGLCSDSGFESPFSILGLPEIVVRSGATPRKSRSVISFLSQF FT TLGLDYQCPNPSLHNALVAVERRVFTVGKGNEVVLPYKNKPGIFTNLNYFRDSIVNKVG FT CPRTHTPEELAATYHSGKRSLYNAAVQSLKKKAVERSDANVTAFLKMEKHLMSKKIAPR FT LICPRNKRYNVELGRRLKFNEKKFMHAIDSTFESPTVLSGYDSFRVGKIIANKWSKFKR FT PVAIGVDASRFDQHVGVEALQWEHSIYNGAFKDPILKELLHWQTENRIMLFVEDKILKF FT KVKGHRMSGDINTSSGNKLIMCGMMHYYFKTLGVKAELCNNGDDCVIICERKDENKFQH FT MHSWFKDYGFDMQIETPVYKIGQIEFCQSKPVKINGYYRMVRKPESISKDAHSLISMAS FT AEDVKTFMSATAQCGMILNSGVPVLDAYHKCLFKASGYKKVSQEAIERIVSFGTQDKLG FT LRKERVEEPITMDNRLSYWESSGVDPQTQVLVERYFDNLLVHIEPRGVKRLTPLLDKTL FT LSIASVARNSVSLPILSK" FT CDS 3035..3637 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF3" FT /product="coat protein" FT /db_xref="GOA:Q91QR3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q91QR3" FT /protein_id="BAB62821.1" FT /translation="MVAVSNVAIQRRRTRRAARRAPRVQLMAVPTVTSRPQRRGRQRRR FT RRNNRGGSFISGGSGKAHTFVFSKDGINGSSKGSITFGPSLSECKPFSDGILKAYHEYK FT ITSILLQFITEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGLE FT WHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK" FT CDS 3051..3620 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q91QR2" FT /protein_id="BAB62822.1" FT /translation="MSQYNDDALVEQHDALHGFSSWLFRRSPADHNAEDDNDDEGEIIE FT EEALFPEDQARLTHSCFQRTASMVVPREVSLSGRLYQNASHSLMEYSRPTMNIRSRVSY FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSTNSVSQRAVRNVSQPELSMASNGMIPV FT KINSRSTIRGTESPRSQAPSRSRSMS" FT CDS <3638..5203 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF5" FT /note="ORF5 is translated from ORF3 by readthrough." FT /note="readthrough domain (RTD)" FT /note="readthrough product" FT /db_xref="GOA:Q91QR1" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q91QR1" FT /protein_id="BAB62823.1" FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLISAR FT QSSDSISLYSIRSQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLT FT INGDRFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME FT FGMVSVVLDEHLEGARSSQYVRKTPRSGHVGVNRSHRLQDNFVPTEYVSDEDSSSNSSI FT VSNRPSTPDNDSDAKFAESMKGKLPSQTKLPPKGFLSQLSTKEKKEISNSKPSNVEGLV FT GPLVAAYGYPSQTGVHDAAREILQAKEAAENLAELERDLKEINKLEPPDVIVQEEIPDF FT VPPSEKILKEDDPDYVPPIWHNADQAVLVSSYEPPDWSRPAYESGDPPKKTGTLKGTLS FT KLGGSLRSGESSLRGSLRKTQDQTDLDNKLSKLSVIQRSRYQRILNNLGKMRARTYIDG FT LDLD" XX SQ Sequence 5853 BP; 1751 A; 1245 C; 1356 G; 1501 T; 0 other; agtaaagttg acacctttac agaagtgatc ttgcaagcaa gagttaattc atcaagagtt 60 aatacaagat ccacctcccg gcaccttcgt atcgtgtttg aggtatctct agtgtttggt 120 tgtttaaata ctagttaata ttaatgttta attttgatag tttagtgtcg gccaccgcta 180 aggtggtcaa agattttata catttttgtt acaatagggc gaggcacgtg tattatgccc 240 tcaaacgctg gctctgggag ctccagggtg tgtttgctgc acatgacgct tttgtcgaca 300 tgtgctacga cgccatgtat ggcgtcgagg agtttgaatg ggaactgcaa aagcagttct 360 caagtgctga acacgacgtg ctaatcgcca agcacgaatt tgagcgcctg ttaaaggatg 420 gcgccccatt gcgggcatgg ccacaaccat gtgctcccat aggtagcttc cggtcgtctg 480 atgacttcca agaagccgct agggaagctg aaaacctgtc cctgatggac ccagaaccct 540 ccttgattaa agggtctggt gattactcgc ttgacaatcc caataggatt gaaaagttca 600 tcaacctcgt tcagaagaaa gaggtacttt ccgccaccga gcaaatgata aaacatgctt 660 atgaagagca tatcggtgag gcaccattcg gaaagtggtt caacacactg ccctctcgca 720 tgaactatat taagagggct gcttcaaaga aggccaaggc ggctaagaga tcaaactctg 780 tccgtcaaat ggtaaacgag gtaaatgtca ttcctgactt tatctcaata tgtgatgttg 840 tccaggtgga tactggcgag aagctccccc ccaagaaaga caaagacggg gagccactag 900 agcctgaacc caaaatgaaa atgatgagaa gggtcaggcc cgagcattat ggtgatgctc 960 gttcatacat taggcagcat attcgtaaca acaacatgcg cctaattgac ggctctgatg 1020 ttagtcatgc taccatcaac cgatatgctc ttaagttttg cgaagactta gagcttgata 1080 tgaccagtac tgcaatgctg gttgattatg ctatgacaat ggtgcccata cccctcaaaa 1140 atgacattga aagggcgaag attgtccatt ctcctgcagc caggcaactt aggcaggatt 1200 tgggcgttct aaacgctgag gttttttaga ggggctctgc tccgactctg gttttgaatc 1260 cccgttttct attttggggt taccagagat cgtggtacgt agtggagcta cacctaggaa 1320 gagtcgtagt gttattagct ttctttcgca gtttacttta ggtctagatt accaatgccc 1380 taatcccagt ttgcacaatg cattggtggc ggttgaacgt agagtgttca ccgttgggaa 1440 aggaaatgag gtagtgctac cttacaagaa caaaccagga atatttacca atcttaatta 1500 ctttcgcgac tcaattgtca acaaagttgg ttgtccaagg acccacactc ctgaggaact 1560 agccgcaacg taccactctg gaaagagaag tctgtacaat gctgcagtcc aaagccttaa 1620 aaagaaggcg gtcgaaagga gtgatgctaa cgttacagcc tttcttaaga tggaaaaaca 1680 tcttatgagt aagaagatag cacccaggtt gatatgtccc cgcaacaaaa gatataatgt 1740 tgaattggga cgtcggttga agtttaatga gaagaaattc atgcatgcaa tcgactcaac 1800 ctttgaatcc ccaactgttc ttagtggata tgacagtttt agagttggga agataatagc 1860 caataaatgg tccaaattta agagaccagt tgcaataggt gttgatgcga gcagatttga 1920 ccaacacgtg ggggtagaag cactccaatg ggagcactct atttataacg gtgcgttcaa 1980 agatcccatc ctcaaggagt tgctacactg gcagacagag aatagaatta tgctgtttgt 2040 tgaagataaa atcctcaagt tcaaggtcaa aggacacagg atgtctggcg acatcaacac 2100 ctcttctggc aacaaattga tcatgtgtgg tatgatgcac tactacttca agacactcgg 2160 agtcaaagcc gaactctgca ataacggcga tgattgtgta atcatatgtg aacggaaaga 2220 tgagaacaaa ttccagcaca tgcatagctg gtttaaagac tatgggtttg acatgcagat 2280 tgaaactcct gtctacaaga ttggacagat agagttttgt caaagtaaac cagttaaaat 2340 taatggctat tatagaatgg tgcgtaaacc agaaagcata tccaaagacg cccattccct 2400 catttccatg gcatcagctg aagatgtcaa aactttcatg agtgctaccg cacaatgcgg 2460 tatgatcttg aatagtggtg tacctgttct agatgcttat cacaaatgcc tatttaaagc 2520 atcggggtac aagaaagtat cgcaagaagc aatagaaaga attgtctctt ttggaacgca 2580 ggacaaactc gggctcagga aagagcgagt tgaagaacca ataacaatgg ataataggtt 2640 gagttattgg gagtccagcg gggttgaccc acagacacag gtccttgttg aacgatattt 2700 cgacaatctg ttggtccata tcgaaccccg cggtgtaaag agattgacgc ctttactaga 2760 taaaactttg ctttcgattg cgagtgtagc acgaaattct gtgtcgctac caatactttc 2820 aaaatagaag cactcatagt aaccatagta gtaataatag tagtagcagt tagtttatta 2880 gactactcta gttcatacag ataaattgca acggattaca aattcctatc aggttttgct 2940 tctggattta tttccagcat tcctgtttca atattggcaa tttattttgt ctacctaaaa 3000 atttcaaaga atctgcgaga gataatcaac gagtatggtc gcggttagca atgtcgcaat 3060 acaacgacga cgcactcgta gagcagcacg acgcgctcca cgggttcagc tcatggctgt 3120 tccgacggtc accagcagac cacaacgcag aggacgacaa cgacgacgaa ggagaaataa 3180 tagaggagga agctttattt ccggaggatc aggcaaggct cacacattcg tgttttcaaa 3240 ggacggcatc aatggtagtt ccaagggaag tatcactttc gggccgtctt tatcagaatg 3300 caagccattc tctgatggaa tactcaaggc ctaccatgaa tataagatca cgagtatctt 3360 attacagttc atcaccgagg cctcttccac ctcgtcaggc tccatcgctt atgagcttga 3420 cccacactgc aagtactccg aaattcaatc gctactcaac aaattcagta tcacaaagag 3480 cggttcgaaa cgtttcccaa ccagagctat caatggcctc gaatggcatg ataccagtga 3540 agatcaattc aagatccact ataaggggaa cggagagtcc aagatcgcag gctccttcaa 3600 gatctcgatc aatgtcttaa cgcagaatgc taaataggta gacggagaac cgggtccgaa 3660 accaggtcca gacccagcac cccagccaac accaacaccc gaaccaacgc cagccaaaca 3720 cgagagattt atcgcgtaca ccggtacgtt gtccacgctt attagcgcgc gacagtcttc 3780 tgacagtatc tcactctact ccattcggag tcagagaatt agatacatcg aggatgaaaa 3840 ttccagttgg acaaacatag atgcaaaatg gtactcacag aattctgttg aggccattcc 3900 aatgtttgtt tatccagtgc ccgaaggcac ttggtcaatt gaaatatctt gtgaaggtta 3960 ccaggcagcg tcaagtacat cagaccccca tcgtggaaaa tgcgatggca tgattgctta 4020 cgacgacgat tcttcgaagg tgtggaatgt tggtcagcag aataacgtaa ccattaccaa 4080 taataaggcc gataatgatt ggaaatatgg tcaccctgat ctcacgatca atggtgacag 4140 attcgatcag aatcaagtag tcgagaaaga tggaatcatt tcattccatt tagtaactac 4200 tggcccaaat gcaagtttct ttctcgtcgc tccagctgtt aagaaaacag ctaaatacaa 4260 cttttgtgta tcatacggag attggacgga tagagatatg gagtttggaa tggtatcagt 4320 agtgctcgat gagcacttgg aaggtgcaag gagttctcag tatgttagga aaacgccaag 4380 atcaggtcat gttggcgtca atcgttctca ccgattgcaa gacaatttcg taccgacgga 4440 atatgtcagt gatgaagata gtagtagtaa tagtagtata gttagcaatc gaccatcaac 4500 tccggataat gatagtgacg ccaaatttgc tgaatctatg aaaggtaagc ttccgtctca 4560 gacgaagctc ccgcctaaag ggttcctatc acaattaagc acaaaagaga aaaaagaaat 4620 ctccaattct aaaccctcga atgtcgaagg tctggttggt cctcttgttg cagcttatgg 4680 atacccatct caaacgggtg ttcatgacgc agcaagagag atactgcaag ctaaagaagc 4740 tgcagaaaac ctggcagaat tagaaaggga cttaaaggag attaacaagc ttgaaccacc 4800 ggatgtaatc gttcaggaag aaatccctga ctttgtgccg ccatcggaga agatattaaa 4860 ggaagatgat cctgactatg tacctccgat ttggcacaat gccgaccagg ctgtattggt 4920 ctcaagttat gagcctccag actggagtcg gccagcttat gagtcaggtg acccacctaa 4980 gaagacagga acactcaaag gtactctctc taaattaggg ggttccttaa ggagtggtga 5040 atcgtctctt agaggtagcc tccgcaagac gcaagatcaa actgatctag ataacaagtt 5100 atccaaactc agtgttatcc agagatcccg gtaccagagg attctcaata acctgggtaa 5160 aatgcgtgcg cgaacatata ttgatggttt agatttagat tagtataata gaagtaagtg 5220 tgcgctttcc atcacattag gtcggagcca accttggtga gttgctgtcg tgggatcctg 5280 ggaaacaggt tcggtgaaca aaaagccggt aatctcgggc gttcgtcaga cgccgtcgta 5340 tcaacacagt atgcatatcc atcaataacc cgacttcttg taactaaaaa ttagagttag 5400 tttccgcctc tcttgtaaac cacatacaag atgcgagctt gtggagagta ccatcccttg 5460 aataaggatg gttgaaagtt tctggttcca atccattgat caaaattggc actgcttctg 5520 gtgattacac tgccgctggt gatacagcgt aaacaatttc tgctacttac tcgatgaaat 5580 gagagtaact agtaaagtct tgccgttcac atgtttattc gacggtacta ggcttcgtcc 5640 ctttgatgac gttaaatgaa agcggagtaa accgacacca cctcactggg ttgggtcaac 5700 ctagggaaac cgggaaaatg cccgggacac ttggtttagt ggattttaaa ctcgagggct 5760 cttcctcgtt aaaaaggggg tagccaggtt gaaaactggc attagggagt gatccctctt 5820 tgttgttaag gtggctttgt gtccacctgc ccc 5853 //