ID AB034916; SV 1; linear; genomic RNA; STD; VRL; 3890 BP. XX AC AB034916; XX DT 16-NOV-1999 (Rel. 61, Created) DT 04-JUN-2006 (Rel. 88, Last updated, Version 5) XX DE Red clover necrotic mosaic virus genes for 27 kDa protein, 57 kDa protein, DE 36 kDa coat protein, 88 kDa protein, complete cds. XX KW . XX OS Red clover necrotic mosaic virus OC Viruses; Riboviria; Tombusviridae; Regressovirinae; Dianthovirus. XX RN [1] RP 1-3890 RA Mizumoto H., Hikichi Y., Okuno T.; RT ; RL Submitted (10-NOV-1999) to the INSDC. RL Tetsuro Okuno, Kochi University, Laboratory of Plant Pathology and RL Biotechnology; Monobe 200, Nankoku, Kochi 783-8502, Japan RL (E-mail:okuno@cc.kochi-u.ac.jp, Tel:+81-888-864-5196, Fax:+81-888-864-5219) XX RN [2] RA Mizumoto H., Hikichi Y., Okuno T.; RT "Red clover necrotic mosaic virus Canadian strain (RCNMV-Can) RNA1"; RL Unpublished. XX DR MD5; b5f98535b7cb03854f333a7efe00c92a. DR EuropePMC; PMC6299227; 30563900. DR RFAM; RF01453; RCNMV_TE_DR1. DR RFAM; RF01454; RCNMV_5UTR. XX FH Key Location/Qualifiers FH FT source 1..3890 FT /organism="Red clover necrotic mosaic virus" FT /segment="1" FT /strain="RCNMV-Can" FT /mol_type="genomic RNA" FT /note="Canadian strain" FT /db_xref="taxon:12267" FT CDS join(124..831,834..2426) FT /codon_start=1 FT /transl_table=1 FT /ribosomal_slippage FT /product="88 kDa protein" FT /note="-1 ribosome frameshifting" FT /db_xref="GOA:Q9QMG1" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9QMG1" FT /protein_id="BAA86872.1" FT /translation="MGFVNFSLFDVDKLMVWVSKFNPGKILSAICNLGIDCWNRFRKWY FT FGLNFDAHMWAVDAFMPLMPHYTEQMERVVGDLCSETLESKLEDCLELDTSVNQYFDEE FT VYKEDDKGVMKLQRSAARKHIKRVRPGMMTAAIKAVETRIRNRHAIFGDNMGLIDEAAV FT RATASDICGEFKINEHHTRTLVYTAAYLSMTPDQKSLDSVKLAYNPKSQARRTLVTAVR FT ENKAVAGFKSLEDFGGPLSFPVEDAPYPILGIPEIRVAEKRASRVMRSKRVVGLPAVSA FT GLKVCVHQTSLHNMIVSLERRVFRVKNAAGELVVPPKPIQNAFDSISYFREEWLRKLSH FT KGQVLKSSIDDVVACYSSEKRKLYQKAADSLEKKPVQWRDSKVQAFIKVEKLECDTKDP FT VPRTIQPRSKRYNLCIGQYLRLNEKKMLDSIDDVFKEKTVLSGLDNRAQGRAIAHKWRK FT YQNPIGIGLDASRFDQHCSVDALKFEHTFYKACFPGDQQLEQLLKWQLSNTGSALLPTG FT ELVRYRTKGCRMSGDINTGLGNKILMCSMVHAFLKEAGVRASLANNGDDCVLFCEKGDY FT DEINRNLEQWFLCRGFEMTVEKPVDVLEKVAFCRSQPVCIATQWAMVRQLGSLSRDCFS FT TQDWLNPKTFKDAMNALGQCNGIINDGVPIHMAQAKLMHKIGGNRKFNLDALHKQMEYS FT WRDRLGKRTNLLWSEVEDATRLSYFKAFGIEPYIQKIVEEYFSQVEITCEGRSTNVLPA FT HYSRIHKDLIKSR" FT CDS 124..834 FT /codon_start=1 FT /transl_table=1 FT /product="27 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q9QMG0" FT /protein_id="BAA86873.1" FT /translation="MGFVNFSLFDVDKLMVWVSKFNPGKILSAICNLGIDCWNRFRKWY FT FGLNFDAHMWAVDAFMPLMPHYTEQMERVVGDLCSETLESKLEDCLELDTSVNQYFDEE FT VYKEDDKGVMKLQRSAARKHIKRVRPGMMTAAIKAVETRIRNRHAIFGDNMGLIDEAAV FT RATASDICGEFKINEHHTRTLVYTAAYLSMTPDQKSLDSVKLAYNPKSQARRTLVTAVR FT ENKAVAGFKSLEDF" FT CDS 927..2426 FT /codon_start=1 FT /transl_table=1 FT /product="57 kDa protein" FT /db_xref="GOA:Q9QMF9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9QMF9" FT /protein_id="BAA86874.1" FT /translation="MRSKRVVGLPAVSAGLKVCVHQTSLHNMIVSLERRVFRVKNAAGE FT LVVPPKPIQNAFDSISYFREEWLRKLSHKGQVLKSSIDDVVACYSSEKRKLYQKAADSL FT EKKPVQWRDSKVQAFIKVEKLECDTKDPVPRTIQPRSKRYNLCIGQYLRLNEKKMLDSI FT DDVFKEKTVLSGLDNRAQGRAIAHKWRKYQNPIGIGLDASRFDQHCSVDALKFEHTFYK FT ACFPGDQQLEQLLKWQLSNTGSALLPTGELVRYRTKGCRMSGDINTGLGNKILMCSMVH FT AFLKEAGVRASLANNGDDCVLFCEKGDYDEINRNLEQWFLCRGFEMTVEKPVDVLEKVA FT FCRSQPVCIATQWAMVRQLGSLSRDCFSTQDWLNPKTFKDAMNALGQCNGIINDGVPIH FT MAQAKLMHKIGGNRKFNLDALHKQMEYSWRDRLGKRTNLLWSEVEDATRLSYFKAFGIE FT PYIQKIVEEYFSQVEITCEGRSTNVLPAHYSRIHKDLIKSR" FT CDS 2428..3444 FT /codon_start=1 FT /transl_table=1 FT /product="36 kDa coat protein" FT /db_xref="GOA:Q9QMF8" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QMF8" FT /protein_id="BAA86875.1" FT /translation="MSSKAPKKSKSRSQPRNRIPNTSIKTVAIPFAKTQIIKTVNPPQR FT PAKALMHTQLVLSVVGTTQLRVNNGKSIQRFRLNPSNPALFPTIAYEAANYDMYRLKKM FT TLRYVPIVTVQNSGRVSMVWDADSRDSAPQSRQETSAYSRSVSTAVYEKCSLTIPADNQ FT WRFIADNTAVDRKLIDFGQLLFVTHSGSEGVEIGDVFFECEVEFKGPQPTATVIQKGVA FT DVGGALSSEGPSYLMSSDLVVTPSGFGMNLDVAGTYLLTLVVAATASGNITVAGNSTLV FT GEARAAYSSGNYIATLVFTSTGVLSATPSIQFTGSSGVTRVQLNLARCKPANTYVTG" XX SQ Sequence 3890 BP; 1120 A; 857 C; 955 G; 958 T; 0 other; gaacaaacgt tttaccggtt tgtaaattgg aattctcgaa ttcgccagtc gccttcttcg 60 tatcaaggat ctggaatttg aacggtatct ttatcatttt aatttctact tttcgtacca 120 gtcatgggtt ttgtcaactt ttcgcttttt gatgtggaca aattgatggt atgggtgagc 180 aaattcaatc caggcaagat attgtccgct atttgcaact tgggtataga ctgctggaac 240 cgttttcgca aatggtactt cggtctcaac tttgatgcac atatgtgggc tgtcgatgcc 300 tttatgccac tcatgccaca ttacacggag cagatggaac gcgtagtcgg cgacctctgc 360 agcgaaaccc tagaatccaa attagaagac tgtctggaat tggacacttc cgtcaaccag 420 tattttgacg aagaagtgta caaagaggat gacaagggcg tgatgaaact ccaaaggagt 480 gctgccagga agcacattaa acgtgtgcga ccaggtatga tgacagcagc cataaaagct 540 gttgagacga ggatcagaaa ccgccatgcc attttcggag ataacatggg attgatagac 600 gaagctgcag ttagagcaac tgccagtgat atctgtggag agttcaaaat aaatgaacac 660 cacacgagga cattggtata caccgcagca tatctttcca tgacacctga ccagaagtcc 720 ctagacagtg tcaagctcgc ctataatcca aagagtcaag ccagaaggac tttagtgaca 780 gccgttcgtg agaacaaagc tgttgctggg ttcaaatccc ttgaggattt ttaggcggtc 840 cactcagctt tccggttgaa gatgccccat atcctatttt aggcatcccg gaaatcaggg 900 tagctgagaa gcgggccagt agagtcatga gaagtaagag agtcgtaggt ttacctgctg 960 ttagtgcggg tctaaaggtt tgcgtccatc aaacctccct acataatatg atagttagtc 1020 tcgaacgcag agtgttccgt gtaaagaacg ctgcgggaga gttagtagtg cctcccaaac 1080 caatccaaaa tgcatttgac tccatttcct acttccgcga agagtggttg aggaaattgt 1140 ctcataaggg tcaagtgctc aaatcctcca tagatgacgt tgttgcttgc tattcttctg 1200 aaaagaggaa attgtatcaa aaagcggctg actctctgga gaagaaacct gtccaatgga 1260 gagattccaa ggtgcaagca ttcatcaagg tagaaaaact tgaatgtgac actaaggatc 1320 ccgtgccccg cacgattcaa cctcgatcca agagatataa tctttgcata ggacaatatc 1380 tcaggttgaa tgaaaagaag atgttggatt ccatagacga tgtcttcaaa gagaagaccg 1440 tcttgtcagg tttggataac agggctcaag ggagagccat cgcccacaag tggcgcaaat 1500 accagaaccc catagggatc gggctagatg cgagtagatt cgatcagcat tgtagcgtgg 1560 atgccctcaa atttgaacac accttttata aagcgtgttt tcctggggat caacagttgg 1620 aacaactatt gaaatggcaa ttatccaaca ctggatcggc cctattacca actggagaac 1680 tggttagata ccgtaccaaa gggtgtcgca tgagcggcga tataaacaca ggccttggga 1740 acaagattct catgtgcagc atggtacacg cattcctgaa agaggcggga gtgcgggctt 1800 cgttagccaa taatggtgac gattgtgtcc ttttctgtga gaagggagac tatgatgaga 1860 taaaccgcaa tcttgagcaa tggttcctgt gcaggggttt cgaaatgacc gtcgaaaaac 1920 ctgtcgatgt actcgagaag gtggcgttct gtcgtagtca accagtttgc attgccacgc 1980 aatgggctat ggtaaggcaa ttgggaagtt tgtctagaga ctgtttttca acacaggatt 2040 ggttaaaccc aaagacattc aaagatgcaa tgaacgcgtt ggggcaatgt aacggaatca 2100 tcaatgatgg agttccaata catatggctc aggcgaaatt aatgcataaa atcggtggaa 2160 accggaagtt caatctagat gcactccaca agcaaatgga gtacagttgg agagatcgtc 2220 tcggtaaaag aacgaatctt ttgtggagtg aggtagagga tgctacgaga ttgtcatact 2280 ttaaagcatt cggcatagaa ccttacattc agaaaatagt ggaggagtac ttctcacaag 2340 tggaaatcac ttgtgagggg cgatcaacaa acgtattacc tgcacactat tctagaatcc 2400 acaaagattt aatcaaatcc cgatagtatg tcttcgaaag ctcccaagaa atccaaatca 2460 cggtcccagc ccaggaaccg gatcccaaac accagtatca aaactgtagc catcccattt 2520 gccaagacgc aaatcatcaa gaccgtgaac cctccacaaa ggccagctaa agctttaatg 2580 cacacccagc tggtactaag tgttgttgga acgactcaac tgcgtgtgaa caacggcaag 2640 tccattcaga ggttcagatt gaacccaagt aacccagctc tattccccac catagcctat 2700 gaagccgcaa attatgacat gtatcgtctg aagaaaatga cactccgtta tgtcccgatc 2760 gtgaccgtgc aaaattccgg acgcgtatca atggtttggg atgccgactc tcgggattcg 2820 gctccccaat cacgacagga gacatctgct tattctcgat ctgtctcgac tgccgtgtac 2880 gagaaatgct cgttgacgat tccggctgat aatcaatggc gattcatagc tgacaacaca 2940 gccgttgata gaaaactgat cgactttggc cagttgttgt ttgtcaccca ctccgggagt 3000 gagggagtag aaattggtga tgtgttcttc gagtgtgaag tagaatttaa aggaccccaa 3060 cccaccgcaa cagtcatcca gaagggtgta gctgacgttg gcggggcact ctcctcagaa 3120 ggaccgtctt acttaatgtc ctcggactta gtcgtcaccc cgtcgggttt cggtatgaac 3180 ttggatgtag cagggactta tctgctaacg ttggtggttg cagcaactgc tagcggaaac 3240 atcacagtag ccggcaattc aacattggtg ggtgaggcaa gggcagcata cagcagcggc 3300 aactacatcg ccactctggt atttactagt accggcgtct tgtcggcgac acctagtata 3360 cagtttacag gatcctccgg agttacacgg gttcaattga acctcgccag atgtaaaccg 3420 gcgaatacct acgtcactgg ttagttggtt aattggttag cgcagcctcc atccgagttg 3480 caagagagga agacgcagtc tcgccgaccc tgttggcaaa cagtaaaatt gcaaaaaata 3540 gagtgttagg agtagttccc atacccttgg ggacaagaac ctattatgga gaaacgaact 3600 ggcatcggac cctgggaaac aggcatctag cgtattaata ggtcgctaga agacgggcag 3660 gcttcaccac taggtaacct gccgccgaga gggaaaacct ctgtgtggtt gtgcgcacgt 3720 cgttgtcgga agaagttcac catagtagtt atttcctttt cttttaggta gaagcacttg 3780 ctccagaggg cgcatacctc tggttaaaca aaattgtccc ctgagagtag aaaactcagg 3840 ttaataaaac aggagaatat ttacctagtt gtataacggc taggtacccc 3890 //