ID AB033998; SV 1; linear; genomic RNA; STD; VRL; 6927 BP. XX AC AB033998; XX DT 23-MAR-2000 (Rel. 63, Created) DT 17-MAY-2006 (Rel. 87, Last updated, Version 5) XX DE Avian nephritis virus 1 genes for structural polyprotein, non-structural DE polyprotein, complete cds. XX KW . XX OS Avian nephritis virus 1 OC Viruses; Riboviria; Astroviridae; Avastrovirus. XX RN [1] RP 1-6927 RA Imada T., Yamaguchi S., Mase M., Tsukamoto K., Morooka A.; RT ; RL Submitted (27-OCT-1999) to the INSDC. RL Tadao Imada, National Institute of Animal Health, Department of Virology; RL 3-1-1, Kannondai, Tsukuba, Ibaraki 305-0856, Japan RL (E-mail:imadatad@niah.affrc.go.jp, RL URL:http://ss.niah.affrc.go.jp/NIAH/hoge-s.html, Tel:81-298-38-7760, RL Fax:81-298-38-7760) XX RN [2] RX DOI; 10.1128/JVI.74.18.8487-8493.2000. RX PUBMED; 10954549. RA Imada T., Yamaguchi S., Mase M., Tsukamoto K., Kubo M., Morooka A.; RT "Avian nephritis virus (ANV) as a new member of the family Astroviridae and RT construction of infectious ANV cDNA"; RL J. Virol. 74(18):8487-8493(2000). XX DR MD5; 0e1e9490a1ec665a5f7881f8498f083f. DR EuropePMC; PMC116360; 10954549. DR EuropePMC; PMC1828050; 17343744. DR EuropePMC; PMC3104002; 21404112. DR EuropePMC; PMC4102142; 20507741. DR EuropePMC; PMC4465002; 25975198. DR EuropePMC; PMC479052; 15280469. DR GOA; P0C6K7. DR InterPro; IPR009003; Peptidase_S1_PA. DR RFAM; RF00164; s2m. DR UniProtKB/Swiss-Prot; P0C6K7; NS1A_ANV1. XX FH Key Location/Qualifiers FH FT source 1..6927 FT /organism="Avian nephritis virus 1" FT /strain="G-4260" FT /mol_type="genomic RNA" FT /db_xref="taxon:336960" FT CDS join(14..3025,3025..4551) FT /codon_start=1 FT /ribosomal_slippage FT /product="non-structural polyprotein" FT /note="composed of two sections ORF 1a and ORF 1b separated FT by ribosomal frameshift" FT /note="serine protease, RNA-dependent RNA polymerase motif" FT /note="similar to human astrovirus reported in Acc# Z25771, FT L13745" FT /db_xref="GOA:Q9JGF2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q9JGF2" FT /protein_id="BAA92848.1" FT /translation="MASAGPTGAGARPPKAFTAQAGLAKLVNPAGLNSILARGKEKFGG FT TQAWKELMGCDVIFARSISHWYGIKGTTYYELTVALGQPLYKPVTDPELTEEEKAVMTA FT VQSRFAQSNSSVVLTRTLLNKTCELKDRIRELTDELGQTEVHLAREKVKAAALKLENRK FT LFVENQELKDQLEKERTKHGWKGLKTLCLWIFLATLIGGYITGSNAACTLVDVPSPMKV FT GYDTFKQMCIHKDSYLPDGAFDKESLALECSKQMDYMDCKEVITDSISGKTSFAGMLRD FT VFRVDEIVTAIRTVVRFAMDFSLAYPICVMFVLILTRNKKHAIISACCALVAKCCGLRL FT LPFTLVLTYAPSETAIAGCIYGLGYISIPLVTFLHWVGLVLKAILVPDDCYIGTRVSHA FT LAWSIMLPMWIITQELMAFTEFPLELQIVTTVVVCTAGFGFRYLTGTVTITEPDGTVKK FT YKRIFNAKSAIGTISTVFFEKAKAIRGVIPSFPSKADNIVKIEVDVDGGSAGVGFRLGN FT YIYTAGHVVGEAKIAKITWKGLTSQAKVLGHIELPLFTDTLARLEIPKPFQQLPVFRLA FT KSSENDYVQMVCFDNQLQNVVTFSGWANIDGDYLNAPFETYAGTSGSPIINRDGRMLGV FT HFGSNAVVSQGFVITRLFATEPAVKQCKSDEDLADEIVRKVMGGIRISFASLTSELEKQ FT RDELNALKQMVNDLIDTDLVALEKKKGKTKRTVRGQKHKTKAISKAAFMKTKVLTEEEY FT RRLEEEGFTKDEIKDIVDNLREQAWLDYQNQLDEEGDDDWYEQMEEDQRINDQIDQNIE FT RDLEDRGEWYGQRKITFKQRAMLRFIQLGRQQQVATVSFPDGYEDRAEELYNKVVTTED FT LPEGETSEAALSLPNKIVHQAGKRLNFKHVKIHPDKTFMKSGVTQIEEKPEGDIILKAK FT TTTLAPKEEPVIQQVEQQPQVEQQQQPQQPVVEEKKRTPPPKPQRKPKTGAKAKCLDCG FT ETFVERQDFHVCKSKKLNEPPSGGYTPVPDHLRWNNWQIYMEPLDLRITVPENYPILGH FT IAIDKLVERKKKVNDPLLKMLEQPKCEGFTSTTWTRKAYTKSFEKFDYGDAVDFVQDYP FT ELTAFADAAVLAEVGYMEGTHVIPIQETSKNMDSTPAFPKMLDFDSERDYLEAHGMKEY FT IDTQLGVQSGKPLWWCFLKNEILKEKKVSEDDIRIITCSDPVITRLGASFDSEQNERMK FT ERTETHHAQVGWTPFFGGLDKRVRRITSCGRTQVLELDWTRFDGTIPVQLFQRMRELRK FT FFLTRRSRRRYGKLLDWYNAQLTDRITLLPTGEVTHVKKGNPSGQFSTTVDNNLVNEWL FT TAFEFGYQHLENHGIIPTVRDYRANVDFLCYGDDRLLAFNPSFVNYDPQVTIDMYKNIF FT GMWVKPENIKLFDSPTGSSFCGFTLVKPHGQWVGVVNVNKLLQSLKTPTRRLPDLESLW FT GKLVSLKIMCYHSDPEAVSYLSNQIRRVEEYARAEGIELPEVGPDFYRKIW" FT regulatory 3022..3028 FT /note="shifty heptamer for frameshifting" FT /regulatory_class="other" FT stem_loop 3035..3052 FT /note="stem-loop involved in ribosomal frameshifting" FT CDS 4571..6622 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF 2" FT /product="structural polyprotein" FT /db_xref="GOA:Q9JGF1" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q9JGF1" FT /protein_id="BAA92849.1" FT /translation="MAGGATAPAGAKPKQPKQKQKKPSSQARKKPSQKQKAMKPVKQEL FT RKVEKQVRVLKARTNGPKVNDTMKTTVTVGTLVGQTQSGLNRQLRVSFNPLLMKSTEGG FT STTPLSIRASMYEMWKPLSVEIFATPLSGFSSVVGSVGFMVITLNGLEASADSIDTIKA FT RRHVQMALGRPYRLKLSARELAGPREGWWLVDTSEAPADAYGPAVDLMLAYATENLLGT FT SSGSTTSYTGTLWQVEMRVTYAFSTYNPKPGLQTLVSQSITGGQTVTIQPSPDDGSLIM FT TTNSQQVLALLTPRVAGQRKGKSQTIWAIAGSAVDAAATVLGPWGYLLKGGFWLVRLIF FT GGSSARNTTTRQYQIYPSVESALTDQPIFGNSTGTQSVTVPICHITEVVNPNAESNNLP FT PPTTGAQPQPQPPAPIEEILLPLAELTGQPGVPPLYTFDGSSYTPPTNWLGSTILLTGI FT PAHKRVTGNLAKFGVTNLQMSKVAATALEIYDFTDFGVFFGTGSYLSEGGIHTGKTLIY FT SLMSGQTPNPWLAANQSGTTWYMPSWAGFPQPGQGDYFLQMQDVTDTTTHTTSVNVYFL FT VAYRQSRRLIAFFNTGGTARPAPTSMLCLYNVDCGRAPQTPYPTFQSTLQSLNQIGVDA FT KSDPDSDDDISLAGSVIGDEFDSVDHLEREREDLMRRLRDLDLRRFQI" XX SQ Sequence 6927 BP; 1976 A; 1602 C; 1605 G; 1744 T; 0 other; ccgaatagat gggatggctt cggccggccc tactggggcg ggggctcgcc ccccaaaggc 60 tttcactgct caggccggac tggccaaatt ggtcaatccg gccggcttaa atagcatcct 120 cgctagaggg aaagaaaagt ttggaggcac ccaagcttgg aaagaactca tgggatgtga 180 tgttattttt gcaagatcca tcagtcactg gtatgggatt aaggggacga cttactatga 240 gcttactgtc gcactcggcc aacctctgta caaaccagtt acagatcctg aactgactga 300 agaggaaaag gccgtgatga ctgcagttca atctcggttt gcgcaaagta actctagtgt 360 tgttctcacc cgcacgctcc tgaataaaac ctgtgaactc aaggacagaa ttcgcgaact 420 tactgatgaa ttgggacaaa cagaagttca cctggcgcgt gaaaaagtga aagcagcggc 480 cttgaagctt gagaatagaa aactttttgt tgaaaatcag gaacttaaag accaacttga 540 gaaggagaga accaaacacg gctggaaggg cttgaaaaca ctgtgcctct ggatctttct 600 tgcgacatta attggtggtt acatcactgg ctctaacgca gcgtgtaccc ttgtcgatgt 660 tccatcccca atgaaagttg gttatgacac ttttaaacaa atgtgcatcc ataaggactc 720 ctatctacct gatggtgcct ttgacaaaga atctctggca cttgagtgtt ccaagcaaat 780 ggactatatg gattgcaaag aagttataac cgactcgatt tcagggaaga cttcctttgc 840 tggtatgctg cgtgatgttt ttagagtcga tgagattgtt actgctataa ggactgttgt 900 tcgctttgca atggacttca gtcttgcata cccaatttgt gtcatgttcg tgctcatctt 960 gaccagaaac aaaaaacatg caataatatc agcgtgttgt gcccttgttg ccaagtgttg 1020 tggattaaga cttttaccat tcactttagt tctcacttat gccccatctg aaacagctat 1080 agcaggttgt atttatggcc ttggctatat tagtatacca ttggtaacgt ttctccattg 1140 ggtcggtctt gtacttaagg ctattctcgt tcccgatgat tgctatatag gtactagggt 1200 gtcacatgca cttgcctggt ccataatgtt accaatgtgg attataacgc aagaacttat 1260 ggcatttaca gagtttcctc ttgaactcca aatagtcact accgtggttg tttgtacggc 1320 tgggttcggc ttccgttatc taactggtac ggttacgatt actgaaccag atggaaccgt 1380 aaagaagtac aagaggattt ttaatgccaa gagtgcaatt ggcactattt caacagtttt 1440 ttttgaaaaa gccaaggcca tacgtggggt gataccttcc ttcccaagta aggccgataa 1500 catcgtaaaa attgaggtag atgttgatgg tggttctgct ggagttggct ttagacttgg 1560 caactacatc tacacagcag gccatgttgt tggagaagca aaaatagcta aaatcacctg 1620 gaaaggctta acatctcaag ccaaggttct cggtcacatt gagttaccac tcttcacaga 1680 tacgcttgct cgtcttgaaa ttccaaaacc ttttcaacaa ctcccagtct ttagactagc 1740 aaagtcttct gagaacgact atgtgcagat ggtctgtttt gacaatcaat tgcaaaacgt 1800 tgtcactttc tcaggctggg ctaatattga cggcgattac ctgaatgctc ccttcgaaac 1860 ctatgcaggt acatcgggtt cacctattat aaatagggac gggaggatgc ttggtgtcca 1920 ttttggtagt aacgccgttg tgtcacaagg ttttgtgatc actaggcttt ttgcaactga 1980 gccagcggtt aagcagtgca agtctgatga agacctcgct gatgagattg ttcgtaaggt 2040 catgggcggt attaggattt cctttgcttc actcacatca gagctcgaga agcagcgcga 2100 tgaacttaac gcgctcaaac aaatggtcaa tgatcttata gacactgacc ttgttgccct 2160 cgagaagaag aaaggtaaga ctaagaggac cgttcgtggg cagaaacata agaccaaagc 2220 gatctctaag gctgccttca tgaaaactaa agtcctcacc gaagaagaat atcgccggtt 2280 agaggaggaa ggcttcacta aagatgagat caaggacatc gttgacaatc tcagagagca 2340 ggcgtggctc gactatcaga accaacttga tgaagaaggt gatgatgact ggtacgaaca 2400 aatggaagag gatcaaagaa ttaatgatca aattgaccaa aacattgaaa gagacctcga 2460 ggatagaggt gaatggtatg gtcagaggaa aataaccttc aagcaaagag cgatgcttcg 2520 tttcattcaa cttggccggc aacaacaggt ggccactgtc tcatttcctg atggttatga 2580 ggacagagct gaagaactct acaataaggt cgtcacaact gaagaccttc cagaaggcga 2640 aacttcagaa gcagcgctta gcctccccaa taaaattgtt catcaggcgg ggaagaggtt 2700 aaacttcaaa catgttaaga tacacccaga taagactttt atgaagtctg gtgttacaca 2760 aattgaagaa aagccagaag gtgatattat cctcaaagcc aaaacaacaa ctttggcccc 2820 taaggaagaa ccagtcatcc aacaggttga acaacaacct caagttgagc aacaacaaca 2880 acctcaacag cctgttgtgg aggagaagaa aagaacacca ccaccaaaac cacaaagaaa 2940 accaaagaca ggtgcaaaag cgaaatgcct cgattgtggc gagactttcg ttgaaaggca 3000 agacttccac gtttgtaagt caaaaaacta aatgagcccc cttcgggggg ctacacacct 3060 gtccctgacc atcttaggtg gaacaactgg caaatctata tggaacctct tgacttgaga 3120 ataacagtac ctgaaaacta tcctattctg ggtcatatcg ccatagataa attggttgaa 3180 cgtaagaaaa aggtcaatga cccgcttctc aaaatgcttg aacaaccaaa atgtgagggc 3240 tttacatcaa caacttggac tcgtaaagcg tacacaaaat cttttgagaa gtttgactat 3300 ggcgatgcgg ttgattttgt gcaggactat cctgaactca ctgctttcgc agatgcagct 3360 gtacttgctg aggttggtta catggaggga acacatgtca ttcccatcca agaaaccagc 3420 aagaacatgg attctacacc tgcctttccc aaaatgcttg acttcgatag tgaaagggac 3480 tatctcgaag cacatgggat gaaagagtac attgatactc agttaggtgt gcaatctggc 3540 aaaccacttt ggtggtgctt ccttaaaaat gagatcctta aggaaaagaa agtcagtgaa 3600 gatgatatca ggattatcac ctgttcagac ccagtaataa ctaggctagg cgcctctttt 3660 gattcagaac aaaatgagcg catgaaggag agaacagaaa cgcatcatgc tcaggtgggc 3720 tggaccccct tctttggtgg actggataag cgtgtcagga gaattacgtc ctgtggcagg 3780 acccaagtcc tagaacttga ttggacgcga ttcgatggca ccattccggt tcagctcttc 3840 caaagaatgc gtgagctgcg taaattcttt ctcactaggc gttcaaggag gcgctatggc 3900 aagttacttg actggtacaa cgcccagtta acagatagaa tcactcttct tccaactgga 3960 gaggtaactc atgtcaagaa aggcaaccca tctgggcaat tttcaacaac agttgacaac 4020 aaccttgtta atgagtggtt gactgctttt gagtttggtt accaacactt ggagaaccat 4080 ggcattattc caacagtcag agactaccgg gccaacgttg actttctttg ctatggagat 4140 gataggcttt tagctttcaa tccatccttt gtcaactacg accctcaggt gaccattgat 4200 atgtataaaa atatctttgg gatgtgggtc aaacctgaaa acattaagct ctttgactcg 4260 ccaactggtt cttccttctg cggcttcact ttagttaagc cgcatgggca atgggtggga 4320 gtagttaatg tcaacaaact ccttcagagt cttaaaacac ccacgcgcag gctgccagac 4380 cttgaatccc tgtggggcaa gctcgtgtcg ctgaagatta tgtgctatca cagtgaccct 4440 gaggctgtgt cctacctttc caaccagata aggcgtgttg aagaatacgc tcgtgctgaa 4500 gggattgaac ttcctgaagt cgggcccgac ttctacagaa aaatctggtg agcggaggac 4560 caaaataact atggctggcg gtgccaccgc acctgcgggc gctaagccca agcaacctaa 4620 acagaagcag aaaaaaccat cttcacaggc aagaaagaag ccttcccaaa aacagaaggc 4680 aatgaaacca gtcaaacagg agttgaggaa ggttgaaaag caagtgagag tcctcaaggc 4740 gcgtacaaac ggacctaaag tcaatgacac aatgaagacc accgtaacag tgggcactct 4800 tgttggacaa acacaaagtg gattaaatcg ccaactcagg gtctctttta acccacttct 4860 tatgaagtcg acagaaggcg gtagcactac tccactctcc attcgtgcct caatgtacga 4920 gatgtggaaa ccactgagtg tggaaatttt tgccacgcca cttagtggct tctctagcgt 4980 ggtaggctca gttggtttta tggtcataac cttgaatgga cttgaggctt ccgcagattc 5040 aattgacacc ataaaagcca gaagacatgt ccagatggcg cttggcaggc cgtataggct 5100 taaactaagt gcccgtgaac ttgctggacc ccgtgaaggc tggtggctcg ttgacacttc 5160 tgaggcacct gccgatgcgt atggcccagc tgttgatctc atgctggcat atgcaactga 5220 gaatctactt ggaacatctt ccggctccac aacttcctat acaggcacac tctggcaagt 5280 cgaaatgagg gttacctatg cattctccac ttacaaccca aaacctgggc tgcaaaccct 5340 tgtttcacag tccattactg gtggtcaaac tgtgaccatt caaccgtctc cggatgatgg 5400 gtcacttatt atgactacca atagccaaca agtcctagca ctcctaacac ccagggtggc 5460 gggtcagagg aagggcaaat cccaaactat ttgggcaatt gccggctctg ctgtcgatgc 5520 cgctgccaca gtgcttggac catggggcta ccttctaaaa ggtggcttct ggcttgttcg 5580 actcatcttt ggtgggtcct ctgcaaggaa cacaacaaca aggcagtacc agatttatcc 5640 atcggtcgag tcagctttga ccgaccagcc aatttttggc aattctactg gtactcagag 5700 tgtcactgtg ccaatttgcc acatcactga agttgtgaac cccaatgcgg aaagtaacaa 5760 ccttccccct ccaacgacag gagctcaacc tcaacctcaa cctcctgctc ctattgaaga 5820 aatacttctg cctttagcag aactgactgg acaaccgggg gttccacctc tttatacttt 5880 tgatggcagt agctataccc ccccaacaaa ctggctgggt tcaacaattc ttctcacagg 5940 aataccagct cacaagcgag ttactggaaa tctcgcaaaa tttggagtta ccaatctcca 6000 aatgtccaaa gttgcagcta ctgcacttga gatctatgac tttacagact ttggagtctt 6060 ctttggtacg ggaagctacc tctcggaggg gggaatacac actgggaaaa ccctgatcta 6120 ttcattaatg tctggccaaa caccaaatcc ttggctagca gcaaaccaat ctggcactac 6180 gtggtacatg ccttcttggg caggctttcc acaaccaggt cagggtgact acttcctcca 6240 aatgcaggat gtcacagata caacaactca tactacatct gtgaatgtgt acttcctagt 6300 ggcttaccgc cagtctcgaa ggcttatagc cttcttcaat actggaggca cagctcgtcc 6360 agcaccaaca tcaatgcttt gtctctacaa tgttgactgt gggcgtgctc cacaaacgcc 6420 ctaccccacc tttcagtcaa ctctccaaag tttgaatcaa attggggtgg atgcaaaatc 6480 tgatcccgac tccgacgatg acatctcact cgcggggtcg gttattggcg acgagtttga 6540 tagtgtggat catctcgaac gcgaaagaga agacctaatg aggaggctca gagatctaga 6600 cctccggcgc tttcagatct aagcgccacc acactgggta actgactaca gttgagaagg 6660 ggtggaccgt aaaccactgg ttggctgact acagcaactg actttcccga ggccacggcg 6720 agtagcatcg agggtacagg aaagctggga ccattgcata gtcaactaat ttggctgtgc 6780 tagggggacc aatggggtgg taggtcaatc aaaccgccac tcacgcaact tggagcctgc 6840 taaaacctac gctcctgtgc gctaaagttg gttctcccga aagtgggctt ttcattattt 6900 gaattaattt tgaattggct aactttt 6927 //