ID AB033715; SV 3; linear; genomic RNA; STD; VRL; 4486 BP. XX AC AB033715; XX DT 06-JUL-2000 (Rel. 64, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 5) XX DE Dianthovirus RVX1 ORF1, ORF2, ORF3, ORF4, ORF5 genes for 35 kDa protein, 54 DE kDa protein, 15 kDa protein, 28 kDa protein, 33 kDa protein, complete cds. XX KW . XX OS Rice virus X OC Viruses; Riboviria; Tombusviridae; Regressovirinae; Dianthovirus; OC unclassified Dianthovirus. XX RN [1] RP 1-4486 RA Miranda G.J., Aliyari R., Shirako Y.; RT ; RL Submitted (19-OCT-1999) to the INSDC. RL Yukio Shirako, University of Tokyo, Asian Center for Bioresources and RL Environmental Sciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-5841-2678, Fax:81-3-5841-8036) XX RN [2] RX DOI; 10.1007/s007050170171. RX PUBMED; 11315634. RA Miranda G.J., Aliyari R., Shirako Y.; RT "Nucleotide sequence of a Dianthovirus RNA1-like RNA found in grassy RT stunt-diseased rice plants"; RL Arch. Virol. 146(2):225-238(2001). XX DR MD5; 3691868ee785db7da638521ee2668c72. XX FH Key Location/Qualifiers FH FT source 1..4486 FT /organism="Rice virus X" FT /mol_type="genomic RNA" FT /note="Dianthovirus RNA1-like genome" FT /note="RVX1:Rice virus X RNA 1" FT /db_xref="taxon:106518" FT CDS 129..1055 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="35 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q9IR22" FT /protein_id="BAA97673.1" FT /translation="MYPLDLVALIKRVQAWSPEKLFTWLWDVSARCVRAFVRWFWKAVD FT YTGASRIIEHSFFEKTLPHVMEAEYNLRLLDQMEARNNAFRMASNVKTDGDSDSESSDE FT EDDEELLRKNLERDIFADLLKDAKEQYKSHLEETRELEIIQARVKADNEEAARIESRYN FT HHKAVDDCLEVLVYEANEAKNLQQISYLKSGKYDKCVKTVRPGCSVALIKSAIDMIRSR FT HMVPDSSFNRIDEAAIRATALDFAASFNMDAKTTHIVVTGVVGICCLPDPKDIENIKVA FT YHPKALQMRDLVSDLRASLPSFTPADF" FT CDS 1229..2662 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF2" FT /product="54 kDa protein" FT /db_xref="GOA:Q9IR21" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9IR21" FT /protein_id="BAA97674.1" FT /translation="MIVSLEQRVFRVKKDGAFVRPPLPVPGAFNSCIAFRILWLAKLHS FT EGPVLKSTVAEVVQCYTAEKRKLYEAAAQTLAWKPICRRDSHIRAFIKVEKLESDVKDP FT VPRTIQPRSRRYNLCLGQYLRLNEKRFTRTIDLVFGEATVMSGYDNVTQARYLRSKWDS FT YPDPVAIGLDASRFDQHCSPEALEFEHSFYTKVFNDPTLDELLSWQRVNKGTAVVMTGE FT CLKYEVNGCRMSGDINTSLGNKLLMCAMVWTYLQAHDIDAKLANNGDDCVLFCSAGSVA FT KIMSTLPGCFLNWGYTMEVEDPVRIFERTVFCRSQPVCVDGTWAMIRQLGSLSRDCFST FT HDWSNEMTFRDNMNAIGQCNGIINDGVPVHMEQAKAMWRAGGSRNFNVETLRSQIEYSW FT RERLGNRDRLLWSPVVPSTRLSYFLAFGIEPCVQEAVEAYLARVSLSAGGQTLPGLPRH FT YSRIHKDLLRCRTANFFAS" FT CDS 2307..2708 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF3" FT /product="15 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q9IR20" FT /protein_id="BAA97675.1" FT /translation="MVLSTTEFLSTWSKQKRCGGLAAVAISMLKHCVARLSTVGENGWG FT IEIGCFGAQWFQAHVCPTSLLSASNLVCKRRLRHIWPGCPFRPGDKPYQVCRAITHAFT FT RIYYDVEPPTSSPVKRHEPWATRSRSQTP" FT CDS 2632..3357 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF4" FT /product="28 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q9IR19" FT /protein_id="BAA97676.1" FT /translation="MSNRQLLRQLNAMNLGQPAPARRRRRRQQPRVVVVQQAPPPPPRR FT RRRNRRNTSAPDRYVGLGLSPAERSLLRGTQNSKVIITVEDSTEHITVTSDRVGQEPML FT LGKWMRSTFERARVAAIEIRTQSVTPNGEPNDDSAARFVWQMGSQDLFCEWHHEHIVAN FT TGPKDDDVWFFQPPADVAALEEHIDTSRLVVEGTFQLHLRIHYRQPAQFRVGTLHGGYT FT RDPNTWMDNDNKTITATGR" FT CDS 3382..4281 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF5" FT /product="33 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q9E9R0" FT /protein_id="BAB11917.2" FT /translation="METSRTYNLEAHKSKDCECEVSVSHHSTHAKSGKKQASKRASGSK FT SSQTSVSTNTNIASRRQPGKQMVVPDHDASLDAVVPQLETLEISQVASRDSNRRRGSRR FT SATPPSDDGLDTFSDTRSETRHTEGNWAQHPNAGSWSQLSLNEQHYEVATGTPVMPPNP FT GPTQPRTRLPKTQVHVDGAGDVVTAPHADWDRYQAYLDRVKRDYGGIGFGNRPLVKSVN FT GYAHMPNSTDILGHRHPMFIVWQQINCYGHVVKGLETIDGMFGIGWHFDLVFRNMKRIH FT EYLEGVGCVPYHKLKDFA" XX SQ Sequence 4486 BP; 1113 A; 1173 C; 1202 G; 998 T; 0 other; acaagcctta ccagcttgta agcctttcgc tcaatactcg gcgtgcaaac tgagatatag 60 cgatttgtgc gtgcttcggc aacggtacct ttctgtgagg tcaaacagac gtgccaccac 120 acgttaaaat gtatcccctg gatttggtcg ctttgatcaa gagggtccag gcgtggagcc 180 cggaaaaatt gttcacctgg ctgtgggacg tcagtgcacg atgcgttcgt gcattcgtca 240 ggtggttctg gaaggcagtt gactacactg gtgcatctcg tataatcgag cacagcttct 300 tcgagaagac cctcccacat gtgatggaag ctgaatacaa cctccgcttg ctggatcaaa 360 tggaggcgcg caacaacgcc ttcagaatgg ccagcaacgt caagaccgac ggagacagtg 420 actccgagag ttctgacgag gaagatgacg aagagctgtt gcgcaagaac cttgagagag 480 acatcttcgc tgatttgctc aaagatgcca aggagcagta caagtcacat ttagaggaaa 540 cgcgtgagct cgaaattata caagcccggg tcaaggcaga caacgaggag gcagcacgta 600 tcgagtcgcg gtacaatcac cacaaggcgg tcgacgactg cttagaggtg ctcgtgtacg 660 aagcgaatga ggccaagaac ctccaacaaa ttagctacct caagagcggc aaatacgaca 720 agtgcgtcaa gactgtacgc cctggttgtt ctgtcgcctt aataaagtca gccatcgata 780 tgatccgcag ccggcacatg gtaccagata gttcgttcaa ccgcatagac gaggcggcca 840 ttagggcaac agccctcgat tttgccgcgt cgtttaacat ggacgccaag accactcata 900 tcgttgtcac aggagttgta ggcatttgtt gtcttcccga cccaaaggac atcgaaaaca 960 tcaaggtggc gtatcatccc aaagccctgc agatgaggga cttggtgagt gatctgaggg 1020 cgagtttgcc ctcgttcact cccgcggatt tttaggtggc ccaatccgct tcctcccaac 1080 tgacacacca cataatcaat tgcagttggc tgaggtgagg gtggcggaga aacgggcgag 1140 tgtcgttccg aaggtgcgtt atgtgtacgg cctaccggcc ctctcggctg gcctgcacgt 1200 gaccattcat aggccttcgt tgcataacat gattgttagt ttagaacagc gtgtcttccg 1260 ggtcaagaag gatggagcat ttgtacgccc acctttgccg gttccaggcg cgtttaactc 1320 atgcattgca tttcgcattt tgtggctcgc aaagctgcat tccgaagggc ccgtgttgaa 1380 aagcacagtg gccgaagtgg tgcagtgtta tacagcggaa aaacggaaac tttatgaagc 1440 agcggcgcaa acattggcat ggaagccaat ctgtagaaga gactcacaca ttagagcttt 1500 cataaaggtt gagaagctgg aatcagatgt caaggatccc gtaccgcgga ccattcagcc 1560 gcgctcaagg aggtacaact tgtgcctcgg acaatacctg cgcttgaacg agaaaaggtt 1620 cacccgcacc attgacctcg tgtttggcga ggctacggtg atgagtgggt atgacaatgt 1680 cacacaagcc aggtacttgc gaagcaaatg ggattcctat cctgatccag ttgctatagg 1740 tttggacgcc tctagatttg accagcattg cagtcccgag gccttggaat ttgaacactc 1800 attttacacc aaggttttca atgatcccac attagacgaa ctgctttcgt ggcagcgagt 1860 caacaaaggg actgctgtag ttatgaccgg tgaatgtctg aaatacgagg tgaacggttg 1920 caggatgagc ggtgatataa acactagtct gggcaataaa ctgctgatgt gcgccatggt 1980 gtggacctac ttgcaagcac atgatattga tgcaaaactc gctaataacg gcgacgactg 2040 cgtcctcttc tgctctgccg gtagtgttgc caagatcatg agcacattgc ctggttgttt 2100 tctgaactgg ggctacacta tggaagtgga agatcctgtg cgcattttcg agaggaccgt 2160 gttttgtcgg tcgcaacccg tgtgcgtaga tggcacgtgg gcaatgatcc gtcaactcgg 2220 gtctttgtca cgcgattgct tttccacaca cgactggtca aatgaaatga cgttcaggga 2280 caatatgaat gctataggac agtgtaatgg tattatcaac gacggagttc ctgtccacat 2340 ggagcaagca aaagcgatgt ggagggctgg cggcagtcgc aatttcaatg ttgaaacatt 2400 gcgtagccag attgagtaca gttggcgaga acggttgggg aatagagata ggctgctttg 2460 gagcccagtg gttccaagca cacgtttgtc ctacttcctt gctttcggca tcgaaccttg 2520 tgtgcaagag gcggttgagg catatctggc cagggtgtcc ctttcggccg ggggacaaac 2580 cttaccaggt ttgccgcgcc attactcacg cattcacaag gatttattac gatgtcgaac 2640 cgccaacttc ttcgccagtt aaacgccatg aaccttgggc aacccgctcc cgctcgcaga 2700 cgccgtaggc gtcagcaacc gagagtggtg gttgtccaac aggcgccccc gcccccccct 2760 aggaggcggc gacgcaacag gcgtaacacc tccgcacctg accgctacgt tgggctgggt 2820 ctcagtccag cagagaggag cttgttacgt ggaactcaaa actccaaagt catcatcacc 2880 gttgaagatt caactgaaca tattactgtc acctctgatc gcgtaggtca ggaacccatg 2940 ctacttggta aatggatgcg ttccaccttc gagagggcac gcgtcgccgc tatcgaaata 3000 cgcactcaaa gtgtcactcc taatggagag cctaatgacg attccgcagc tagatttgtc 3060 tggcagatgg gcagtcaaga cctcttctgt gagtggcacc atgagcatat agtggccaac 3120 actggcccga aagacgacga cgtgtggttc tttcaacctc ctgccgatgt ggcggcgctt 3180 gaggagcaca tagacacctc gcgcttggtg gttgaaggca ctttccagct tcacctgagg 3240 attcattatc gccaaccggc acagtttagg gtcggcaccc ttcacggtgg gtacacccgt 3300 gaccccaaca cgtggatgga taacgacaac aagaccatta cggccactgg ccggtgagac 3360 aaaccatacc aggtttgaag catggagacc tcacgtactt acaaccttga ggcgcacaag 3420 agcaaggact gcgaatgtga agtttccgtg tcgcaccact cgacgcacgc taagagtggg 3480 aagaaacaag cgagcaaacg tgcaagtggc agcaagtcat cccagacctc tgtttccacg 3540 aacactaaca ttgcatcacg gcgtcaacct ggcaaacaaa tggtcgttcc agatcatgat 3600 gccagccttg acgctgtcgt ccctcagctg gagactcttg agatttctca ggtcgcctct 3660 agggactcta accggcgccg tggttcacgc cgcagcgcca cgcccccgag tgacgacggc 3720 cttgatacct tcagcgacac cagatctgaa accagacaca ctgagggcaa ctgggcccag 3780 caccccaacg cgggcagctg gtcccagtta tcgctgaacg aacaacacta tgaggtggct 3840 acaggcactc ctgtcatgcc gcccaaccca gggcccaccc aaccccgcac tcgtttgccc 3900 aagacccaag ttcacgtgga cggggctggt gatgttgtca ccgcccctca cgctgattgg 3960 gacaggtacc aagcttatct tgatcgagtc aagcgggatt acggtggaat cgggtttgga 4020 aacagacccc tcgtcaagtc ggtgaatggg tatgcccaca tgcccaactc caccgacata 4080 ctcgggcaca gacacccaat gttcattgtc tggcagcaga tcaactgtta tggacatgtc 4140 gtcaagggat tagagaccat cgacggtatg tttggcatcg ggtggcactt tgacttagtc 4200 tttcgcaaca tgaaacgcat tcacgagtac cttgagggtg taggctgtgt gccttaccac 4260 aaactcaagg actttgctta gagccaacgg gcgctatcct cggcgcccta ataacctaag 4320 cgttggtaaa cgtgtggtca cgcatggtgg tacggctctt cggagatgcg tagcttgcag 4380 cgtacacctt ggctggttac ctaggtgtat ggcgatcacg tgaacccaac actaaaaatt 4440 aggctttgta gacctccagc gccagagtat aacggctaag cacccc 4486 //