ID AB033692; SV 1; linear; genomic RNA; STD; VRL; 3418 BP. XX AC AB033692; XX DT 21-APR-2000 (Rel. 63, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 4) XX DE Sorghum chlorotic spot virus genomic RNA 2 for capsid protein, 62-kDa DE readthrough protein, 18-kDa cys-rich protein, complete and partial cds. XX KW . XX OS Sorghum chlorotic spot virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-3418 RA Shirako Y.; RT ; RL Submitted (19-OCT-1999) to the INSDC. RL Yukio Shirako, University of Tokyo, Asian Center for Bioresources and RL Environmental Sciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-5841-2677, Fax:81-3-5841-8036) XX RN [2] RX DOI; 10.1006/viro.2000.0251. RX PUBMED; 10772992. RA Shirako Y., Suzuki N., French R.C.; RT "Similarity and divergence among viruses in the genus Furovirus"; RL Virology 270(1):201-207(2000). XX DR MD5; ecabfe76401f3ba0458ef7ef5c0cb1da. XX FH Key Location/Qualifiers FH FT source 1..3418 FT /organism="Sorghum chlorotic spot virus" FT /segment="2" FT /mol_type="genomic RNA" FT /db_xref="taxon:107804" FT CDS 191..718 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="capsid protein" FT /db_xref="GOA:Q9JGJ4" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:Q9JGJ4" FT /protein_id="BAA94805.1" FT /translation="MAVEAGYDTWNAEINRIAVRHAFIRYNTLLATVQDWTKTRTSLVA FT HVGTVLAALSTLGTRDFFSRKKRFAFAEADGDIIFCDLSDEGTQQAMNRLKTVLMAVKG FT EGLKARNAGRASGTGTQAQETEDTSGNDTALAIANALVEFQTHIDSDLFLKNHCFTQDQ FT FEARYNLKWSGK" FT CDS <719..2368 FT /codon_start=1 FT /transl_table=1 FT /gene="RT" FT /product="62-kDa readthrough protein" FT /db_xref="GOA:Q9JGJ3" FT /db_xref="UniProtKB/TrEMBL:Q9JGJ3" FT /protein_id="BAA94806.1" FT /translation="WGGVLSASRESVVENAVLRRLTAKDLGLLPRRDTNGTVLQDGPDI FT LYEELEDALLASNTSVYNPHAAIEEYEIDTGDGEQLRHEVSHTEDSDYRILYLFLILCA FT ILMTLAMMLSRAFVNFLYNRRDHRRFGGPCERCARRLWRFRLWLVGLAMRRYGDLQVTR FT KRHTRSAMRQYLNSYEDQTDLWQSYEGVTPEEALIVADQHLFVDAVDQLASGGGDLQCV FT RTAQTISERYGVKNPALQDKLDEFARRLAIQVRFEDTDATPGFLDLRNASMQEVLDCDL FT SEQTINPQYNQICALQHMFAMVGKPAFTDFVIAYKGTYYPCVIEAQRKHAEMLGTDPDD FT KWGPLEWMYCVIMVGSLASFGFATVKGIVKLSQMVKNWLRLRALRALPSVTHGGDGGDG FT GLPFFEMEDFTARLRVLNEFVANMGEQVVDTSVEDLRRDLVSVLTAHSGSEPPAVDRPY FT LEGVGIGREVDELPASTEIEGEQGESLFDPGLRIKRWETEAAVPKGVGGFSSFIRTSGS FT VSGRARMSAQNSVSRVKLRNASMMKSKRLMAA" FT CDS 2409..2879 FT /codon_start=1 FT /transl_table=1 FT /product="18-kDa cys-rich protein" FT /db_xref="InterPro:IPR007609" FT /db_xref="InterPro:IPR016567" FT /db_xref="UniProtKB/TrEMBL:Q9JGJ2" FT /protein_id="BAA94807.1" FT /translation="MTVSTIHSCERCLEGRTSLRCENKYRLSVYQSRQVEKSAYACKIS FT QFGVPCGMPAQFELDGETLKVVCDGYCGLKHKNMAESGSWRGTLLVILQKELEALQLKE FT EQLKTRIAEVTQQHDLVMAETAAVLRPDSPPKAMVTTNSRVKYVRRKPAPRM" XX SQ Sequence 3418 BP; 874 A; 620 C; 969 G; 955 T; 0 other; taaaacctca cctacattga tctcgactac cattagaagg gccgcttcgg cgataaatcc 60 ttttatggca gttgttgatt aatagaagtg cgagaagaaa ctggagaaat tgaagggaca 120 gattgagtct aagcagcgcg gtacgatttc ggaagttcaa ccacaaaaat ctgttacggt 180 ctccattcag atggcggtcg aagccggtta tgatacgtgg aatgctgaaa tcaaccgtat 240 agcagttcgc catgcgttta taagatataa tactctattg gcgacggtgc aagactggac 300 aaagacgcgt acctccctgg tggcgcatgt tggcacggta ttggccgcgc taagtacgtt 360 gggaactagg gactttttct ctaggaagaa gcgttttgcc ttcgcggaag ctgatgggga 420 tatcattttc tgtgatctta gcgatgaagg tactcaacag gccatgaatc gcctgaagac 480 ggtactaatg gctgtgaagg gagaagggtt gaaagcgagg aacgctggtc gtgctagtgg 540 taccggcacg caggcgcagg aaactgaaga cacgagcggg aacgataccg ctttagctat 600 tgctaacgcc cttgtggagt ttcaaactca tatagacagt gatttgtttt taaaaaatca 660 ctgctttacg caggatcagt ttgaagctcg ttacaatttg aaatggagtg gcaaatgatg 720 gggtggcgtc ttgtcggcga gccgcgagtc tgtagtggaa aatgctgttc tgcggcgatt 780 aaccgctaaa gatttggggt tgctgccaag gcgcgataca aacggtactg tactgcaaga 840 tgggcctgac attttgtatg aggagttgga ggatgctttg ttagcgtcta acacctctgt 900 gtacaatcca catgcagcca ttgaggagta tgagattgac actggagacg gtgagcaatt 960 acggcatgaa gtttctcata ctgaagattc ggattacaga attttgtatt tgtttcttat 1020 actttgtgcg atattgatga ctttagctat gatgttgtct cgagcttttg tgaacttctt 1080 gtataatagg agagaccaca gaaggttcgg tgggccatgt gagaggtgtg ctagacgttt 1140 gtggagattc agactttggt tggtaggtct ggccatgcgg cgttacggtg atttgcaggt 1200 tacgcgtaaa cgccacacta ggagtgctat gcgacaatat ttaaactctt atgaggatca 1260 gactgatttg tggcagtctt atgaaggcgt cacacctgaa gaagcattga ttgtagccga 1320 tcagcacctg ttcgtggatg cggttgatca gctagcgtcg ggtggtgggg atttgcaatg 1380 tgtgcgaacg gcccagacta tctccgagcg ctatggcgtg aaaaaccccg ctttacagga 1440 caagttggac gagtttgcta ggcgattggc tattcaggtt aggtttgagg atactgacgc 1500 tactcctggg tttctggatt tgagaaacgc gtctatgcaa gaggtattgg actgtgattt 1560 gtctgagcag actattaatc cccaatacaa ccagatttgc gcccttcagc acatgtttgc 1620 tatggtaggt aagccggcgt ttaccgattt cgttattgct tacaaaggta cttattatcc 1680 gtgtgttata gaagcccaaa ggaaacacgc ggagatgctg gggactgatc ctgatgacaa 1740 atggggtccg ttggaatgga tgtactgtgt cattatggtc ggttctttag cgtctttcgg 1800 atttgccacg gtgaaaggaa ttgtaaagtt atcacaaatg gtcaaaaact ggctgcgact 1860 tcgtgctctg cgggcgttac cttcggtcac gcatggaggg gacggaggcg acggtggttt 1920 accgtttttt gagatggagg acttcactgc cagattaaga gtattgaatg aatttgtcgc 1980 taatatggga gaacaagttg ttgacaccag tgtagaagat ttacggagag atttggtatc 2040 ggtgttaact gcgcactctg gatcggaacc acctgctgtt gataggccat atcttgaagg 2100 tgtgggtatc ggtagagagg ttgatgaact tcctgcatct accgagattg agggtgagca 2160 gggagagtca ttgtttgatc ccggtttgag aatcaagcga tgggagactg aagcggctgt 2220 tccgaaagga gtaggcggtt tttcttcttt cattagaacg tccgggtctg tgagcggaag 2280 agccaggatg tcggctcaga atagtgttag tagagttaag ttgaggaatg ctagtatgat 2340 gaagtctaag aggctaatgg cggcttagat tggtgttttt cattgcattc tcgtctttgc 2400 ttttcaagat gactgtgagt actattcata gttgtgagcg ctgtttagag ggtcgtacta 2460 gtttaaggtg tgaaaataag tataggttat ctgtgtatca gtctcgtcag gtagagaaat 2520 cagcttacgc ttgcaagatt tctcagtttg gtgtaccgtg tggcatgcca gcccagtttg 2580 aactggatgg ggaaactttg aaggttgtct gtgatgggta ttgtggttta aaacacaaga 2640 acatggcaga atctggtagt tggcgcggca ccttgttagt gatactccaa aaggagttgg 2700 aagctctgca gctgaaggaa gagcagttga agacgaggat agcggaagtc actcagcaac 2760 atgatttggt catggctgag acggctgctg tccttagacc tgattctcct ccgaaggcta 2820 tggtcacgac taattcgcgt gtaaagtacg taaggcgtaa acccgcaccg cgtatgtgat 2880 gcggcttagt cctagaagca actaggaccc ggttctggac ggaaccagct aagggctaaa 2940 aaccgttctt ttgtggagag gtgtgaggtg gtttaaagtt agtttgtgtt atatgtatta 3000 ccactttttc atgtatcgtg ggagcgtata gtgtttttaa gagtgctata tttactgtat 3060 ttctttatgc agttgtgttt ccataaaaaa aaaaaaaaaa aaaaaaaaaa agagcctact 3120 tacttggacg gaaagtaagc ggtcctgtgt cgatacacag gggtctgcgt ttctgagacc 3180 taaaatttca gaaaagccta cacactcggg ttgagggtgt gcgtgatttc aacgatatga 3240 aattgtccac cgcaatggac attaaatgtt gcgggtctta tccctaggcg ctacagatgt 3300 aattaacgaa agatctgtaa ttgtcgatga tgggatgtgg tgggttacca cagctgctag 3360 gacacagcag ttaagagggg ttcgactccc cccctgaacc ggagggttat ccggccca 3418 //