ID AB033691; SV 1; linear; genomic RNA; STD; VRL; 6878 BP. XX AC AB033691; XX DT 21-APR-2000 (Rel. 63, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 4) XX DE Sorghum chlorotic spot virus genomic RNA 1 for 145-kDa protein, 59-kDa DE readthrough protein, 37-kDa movement protein, complete and partial cds. XX KW . XX OS Sorghum chlorotic spot virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-6878 RA Shirako Y.; RT ; RL Submitted (19-OCT-1999) to the INSDC. RL Yukio Shirako, University of Tokyo, Asian Center for Bioresources and RL Environmental Sciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-5841-2677, Fax:81-3-5841-8036) XX RN [2] RX DOI; 10.1006/viro.2000.0251. RX PUBMED; 10772992. RA Shirako Y., Suzuki N., French R.C.; RT "Similarity and divergence among viruses in the genus Furovirus"; RL Virology 270(1):201-207(2000). XX DR MD5; 7e260ab35f4569f1b25c843736b0edb0. XX FH Key Location/Qualifiers FH FT source 1..6878 FT /organism="Sorghum chlorotic spot virus" FT /segment="1" FT /mol_type="genomic RNA" FT /db_xref="taxon:107804" FT CDS 115..3948 FT /codon_start=1 FT /transl_table=1 FT /gene="ORF1" FT /product="145-kDa protein" FT /db_xref="GOA:Q9JGJ7" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9JGJ7" FT /protein_id="BAA94802.1" FT /translation="MEGTGGLLGILGEADIVRAAIATRTNSQLHQTVCDHIKDHIVDSK FT EKQKTKKKIDVRRNLDQEQIQLLNELYPERHIVTSSYERGTHNFAAASRIIELDILLSK FT FPKDKFVYDIGGNWASHVKRNDNRRVHCCCPILDFRDAQRKSVRWASIEKFVAEKESIP FT EDLGNKIKQLYSDESRIRENVRKQDLRAEAMDGVWYCQNKFEDCVHNVANAAAIAIHSI FT YDIEIEDLVDALEEKQIKQLTGTFLFSVELLMGSKRGELPTVNGFFEVEGDKVKYGFYD FT DPNCGYTHNLQQLKKYLTKTYVKARGGSVYYLELNDIRGDVVFFTFTDATEAVMMGVSV FT DESFKCIPVNAANKVVFPLFSLNERSKELEFSEVILPRDFVSRAVEYVDRVKDNQNTVD FT NIRSYLFSTNNSVVIAGASRKTVEKVNPLLISRICTTLQVYSEVRREKEKRVMIALKDQ FT VREDVSLNSLFAATVARVFGKVSVWQRALRAYATWIGHVYGCDVLNFANMPLYVEIHDR FT IRLWSQTAQLDGFFHDMADLEEKMRVHREIEEERKRISECIASEKLGDLYVEVDVCDNV FT SERNVEARVLRPMEHKKGAINLSIVNSWCEEGSLFALDERPRKVHTPLKNLLGKMVEII FT FPKCELSAVMFDEQGQRVYADSLDKRQLKLLLDGKISPKDVTVGVQQSIQSEMVAQHDF FT TLDKVVREVAAEAFDIWGRELEGVSEEKEEVAVVSKSCRSVAVQTNDDDDLPPPTATSP FT SPSISSIEDNYPQTPDFTTPSSPDSVVTESSSDGEEPAVKQWGSTCSESDDAYLSVSVM FT MTDEVKVSRLPNAPKFESFATVQKKAKMEYLWYLRCKMISDRSTLRGIIDDFNNGLFYS FT ENCDTPKDSCFLDYTTSSNGTWCFSKRPQRLGHAYGVGFNIVAGKITTCELFKLFWDQE FT VLSDKPRNCGMYNYVLINDLTYLMNEMVIYRNLQNTFMRKERRVSAKVVLKDGVPGCGK FT STWILNNANLKRDVVLSMGKEATVDLREKFEEKYAFGKKELNRVRTVDSYLMHDCGKEM FT TCNTLHFDEALMAHAGMVYFCADLLGARKLICQGDSQQIPFVNRVESITLRYANLVIDK FT TDKIRHTYRSPIDVACYLTMKGYYGADRITTTNSDGRSLGVVGPRHEKPMTSVYCVPYL FT AGVQYLTFTQAEKEDLHKALRSKGPVSVSTVHEAQGKTFNDVILVRLKTTENEIYPGGR FT KSKPYSIVGVTRHRRSLVYYTAIEDRLYYDIEDMKRVMEDKLMKSFNGEHTK" FT CDS <3949..5472 FT /codon_start=1 FT /transl_table=1 FT /gene="RT" FT /product="59-kDa readthrough protein" FT /db_xref="GOA:Q9JGJ6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9JGJ6" FT /protein_id="BAA94803.1" FT /translation="RFGSKFDSVDVCDREVKVPDVGELQTIQDFYDRTFPGNSTIETFF FT DGYEVATGGIQIEVDNCKIFPHKNVKVWQEKRGLIPALRTAMPEKRQNGLVESLLALKK FT RNMAAPKLQEAVNEFEIIGETIEKAKAVFFNETLIDNTECSTLEANMRWWEKQSHTARQ FT QMLADTRFVDQIDLCTYNFMIKNDVKPKMDLTPQSEYAALQTVVYPDKIVNALFGPVMK FT EINERIRYALKPHVVYNSRMNADELDRTVEFLDVNKKYNAFEIDFSKFDKSKTSLHIRA FT VIELYKLFGLEELLAFMWEKSQCQTVVKDRLNGIVAYLLYQQKSGNCDTYGSNTWSAAL FT ALLETMPLEKAEFMIFGGDDSLILFPEEVVVEDPCRRLASLWNFDCKLFSFNHNLFCGK FT FLLKIGDRYRFSPDPVKLMTKLGRKDIVDGQVLSEIFVSIGDNYKSYRDFRILSALAAA FT VQERYRTNEDALAALISLRKYISDFSLFSSMFGYKGGFVESKVSKDYEW" FT CDS 5527..6510 FT /codon_start=1 FT /transl_table=1 FT /product="37-kDa movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q9JGJ5" FT /protein_id="BAA94804.1" FT /translation="MANPTSLKSNKLGDVSADSLEAMINGMMEDLENKEFDEEDLRTNR FT SRAYNVESKFMRKPLVSDKVWKRLKDRYQQWSKSNKEMGTAFNVTFENIMLNVVPNVPE FT GYSGTTKISLADTGLTLSQQVIPDQEQTMELGAGPHVMYFNMHYSIPLNDDRPIVLQFE FT TDCEMANSSMSVMTVFAYWKVSFNFRSTYYKPQRSTCTKLLVGYKKDTRMKDAKDVRAF FT VARSLVIERMLNDRPYVLPDSVNVVKEAFKKKEADGTTSAIPEKGEFVDPMLKLNSVAR FT RKARESAGNMTLKDREKAAKEGMRTEEADQKVKPKADIQFGSVQQL" XX SQ Sequence 6878 BP; 1951 A; 1197 C; 1829 G; 1901 T; 0 other; ctgttcggtc cgtcaggtac tcaaaacagt tgttaggaat aattacgtta ctgtaagatc 60 tttgccaagg gccgcctctg gcgataaatc cttgggggtt ttatagtttt cgtaatggag 120 ggaactggtg gtttgttggg tatcctaggt gaggctgata tagttcgagc cgcaatagca 180 accagaacga attcgcagtt gcatcagact gtatgtgacc atattaaaga tcatatagta 240 gatagtaaag aaaaacaaaa aacaaaaaaa aaaatagatg tgcgcaggaa tttagatcag 300 gagcagatac aactcttaaa tgaactgtac cctgagaggc acattgtcac cagcagttac 360 gaaaggggga cgcataattt tgccgccgct tctaggatca ttgagttgga cattttgctg 420 agcaagtttc caaaagacaa gtttgtctat gatattggtg gtaattgggc ttctcatgtg 480 aaacggaatg ataacagaag ggtgcattgt tgttgtccga ttttagattt tcgtgatgca 540 cagagaaaat ctgtacgttg ggcgtcgatt gagaaattcg tggctgaaaa agaaagtatt 600 cctgaagatc tgggtaataa gattaagcaa ttatactctg acgagagtcg gatcagggag 660 aacgtgagga aacaggattt acgggctgag gctatggatg gtgtgtggta ttgtcaaaac 720 aagttcgaag attgtgtaca taacgtggcg aatgcggcgg ctattgctat ccacagcata 780 tacgatatcg aaatagagga cttagtcgat gctttggaag agaaacagat aaagcagctg 840 actgggactt tccttttttc tgtggagttg ttgatgggta gtaaacgcgg tgagctacca 900 accgttaacg ggttttttga ggttgagggt gacaaagtga aatacgggtt ttacgatgac 960 cccaactgtg gttatacaca caacctgcaa cagttgaaaa aatatctcac aaagacatat 1020 gttaaggcac gaggtggttc tgtatattac ctggaattga acgacattag aggtgacgtt 1080 gtgttcttta cgttcactga tgctacagag gctgttatga tgggcgtgag tgttgacgaa 1140 tcattcaaat gtatcccggt gaacgcagca aataaagtgg tattcccgct attttccttg 1200 aacgagagga gtaaggaatt ggaattttct gaggttattt taccgcgcga tttcgtgagc 1260 agagcggttg aatatgtcga cagagttaag gataatcaga atacggttga taatatcagg 1320 agctacttgt tttctaccaa taatagtgtt gtgatagcgg gtgcttcgag gaagacagtt 1380 gagaaagtca atccgttgtt gatctcgcgt atttgtacta cattgcaagt gtattccgag 1440 gtgcgaagag agaaagaaaa acgcgttatg attgctttga aagatcaggt gagggaagac 1500 gtttctctga actcgctgtt tgctgctact gtagcgcgtg tttttggcaa ggtatcagtt 1560 tggcagcgtg cgctgagggc ctacgcgaca tggatcgggc acgtgtacgg ttgtgatgta 1620 ttgaatttcg cgaacatgcc gttatacgta gagattcatg atcgtattag gttatggtca 1680 cagactgcgc agttggatgg gtttttccat gatatggctg atttggagga gaaaatgcgc 1740 gttcatcgtg aaattgagga agagagaaag cgtattagcg agtgcattgc ttctgagaaa 1800 cttggggacc tatacgttga agttgatgtg tgcgataatg tttcggagag gaatgttgag 1860 gctagagtac taagaccgat ggaacacaaa aaaggggcta tcaatttgag tatcgtcaat 1920 tcgtggtgcg aagagggaag tttatttgct ttggatgaga gaccgcggaa agtgcacacc 1980 ccgttgaaaa acttgttggg aaaaatggtt gagatcatat tcccgaaatg tgagttgtca 2040 gcggtaatgt ttgatgagca gggacagcgt gtgtatgcgg actctttaga taaaaggcaa 2100 ttaaaacttc ttttggacgg taagatttca cctaaagatg tgactgtcgg cgtacagcag 2160 agcattcaat cagaaatggt tgcgcagcat gattttacgc ttgataaggt tgtcagggaa 2220 gttgcagctg aagcattcga tatttggggt cgtgagttgg aaggagtttc ggaggagaaa 2280 gaggaagttg ctgttgttag caagagttgc cgaagtgttg ctgtgcagac aaatgacgac 2340 gacgacctcc cgccaccgac tgctacatct ccatcaccct ccatcagttc tatagaggac 2400 aactatccgc aaacgccgga ctttactaca ccgtcctcgc ctgattcggt tgttacggaa 2460 agctcttctg acggagagga accggccgtt aagcagtggg gctcgacgtg ttccgagagc 2520 gacgatgctt atctatctgt atctgtgatg atgacggatg aggtgaaagt atcgagattg 2580 cctaatgcac caaaatttga atccttcgcg acagtgcaga agaaggcgaa gatggagtat 2640 ttgtggtact tgcgttgtaa gatgatctct gataggtcaa ccttgcgagg tatcatagat 2700 gatttcaata atgggttgtt ctactcggaa aactgtgata cgccgaaaga ttcatgtttc 2760 ttggactata cgacttcgag taacggcacg tggtgttttt cgaaacggcc tcagcgcctt 2820 ggacacgctt acggtgttgg gttcaacatt gtggctggaa agatcacgac ttgcgaatta 2880 ttcaagttat tttgggatca ggaagtgctc agcgataaac cgaggaattg tggtatgtat 2940 aattacgttc ttataaacga cttgacttac ctgatgaatg aaatggttat ttacaggaat 3000 ttgcagaaca cgttcatgcg gaaggaacgt cgggtgagtg cgaaagtcgt gcttaaggac 3060 ggtgtacctg gttgcggaaa gtccacgtgg atattgaaca acgctaattt gaaaagagat 3120 gttgttttgt cgatgggaaa ggaggccacc gtggacttgc gagaaaaatt tgaagagaaa 3180 tatgctttcg ggaaaaagga gttgaatcgt gtgcgtaccg tagattcgta tctcatgcac 3240 gattgtggca aagagatgac ctgcaacaca ctgcactttg atgaagctct gatggcgcat 3300 gctggcatgg tgtatttttg tgccgatctt ctgggcgcgc ggaagctcat ttgccagggt 3360 gattcccaac aaatcccgtt tgtgaatcga gtcgaatcaa taacgttacg ctatgcgaat 3420 ttggtgatag ataagacgga taaaatcaga cacacttacc gatctcctat agacgttgcg 3480 tgctacttga cgatgaaagg atactatggg gctgaccgga ttacgacgac caattccgac 3540 ggtagatctt tgggagtggt tggacccagg cacgagaagc cgatgacgtc tgtgtactgc 3600 gtgccttatc tagctggtgt gcagtatcta actttcacgc aggctgagaa ggaggatttg 3660 cataaagcac tacgctcaaa aggacctgtt tctgttagca cggtgcatga agctcagggc 3720 aagacgttca acgacgtcat tctggtacga ctgaagacca ccgaaaacga aatttatcca 3780 ggcggaagaa agtccaaacc ttactcgata gtgggtgtga ctaggcacag gcgatcattg 3840 gtctactaca cggctattga agacaggttg tattacgaca ttgaagatat gaagcgcgtt 3900 atggaggaca agctgatgaa atcgtttaac ggtgagcata ccaaatgacg gtttgggtcg 3960 aagtttgact ctgtagatgt gtgtgatagg gaagttaaag tgccagacgt aggagaattg 4020 caaacaattc aagacttcta tgaccgcact tttcccggca actccactat agagacattc 4080 ttcgacgggt acgaagtcgc aactggtggt attcagattg aagttgataa ttgcaagatt 4140 ttccctcata agaacgttaa agtctggcaa gagaaacgag gtttgatacc ggctttgagg 4200 actgccatgc ccgagaagag acagaatggt ttggttgagt cgttattagc attgaagaag 4260 agaaatatgg cggcaccgaa attgcaagaa gctgttaacg aatttgagat tataggtgag 4320 actattgaga aagcaaaagc ggtcttcttt aacgaaaccc tcatcgataa cactgagtgt 4380 tccactttgg aagcgaacat gcgctggtgg gaaaaacaat ctcatacggc tcgccagcag 4440 atgttagcgg atacgcggtt tgtagatcaa attgatcttt gcacgtacaa ttttatgata 4500 aaaaacgatg tcaaacctaa aatggatttg acacctcaat cagagtacgc tgccctgcag 4560 accgttgttt atccggacaa aatagtgaac gctttgttcg gtcctgttat gaaggagatc 4620 aatgagcgca tccggtacgc cttaaaacca catgttgtgt acaattcgcg catgaacgca 4680 gatgaattag acaggacggt tgagttctta gatgtgaata agaagtataa cgcatttgag 4740 attgatttct cgaaattcga caagtcaaaa acgtcacttc atattcgagc tgtgatagag 4800 ttgtacaagc tttttggtct cgaagagttg ttggcgttca tgtgggaaaa atcgcagtgt 4860 cagactgttg tgaaagatag gcttaatgga attgtggcct acttgttgta tcaacaaaaa 4920 tctggaaact gtgatacata cggatctaac acgtggtctg cggctcttgc gttattagag 4980 accatgccgc ttgagaaggc ggagttcatg atcttcggtg gtgatgactc tttgatactt 5040 tttcccgagg aggtggttgt tgaagaccct tgcagacgct tggcttcgtt gtggaacttt 5100 gactgtaagt tgttttcttt caaccataat ttgttttgtg gaaagttttt gttgaaaatc 5160 ggcgatcgat ataggttttc ccccgaccct gtaaagttaa tgacaaaact ggggaggaaa 5220 gatatagtag atggtcaggt tttatcggag atttttgttt ctattggaga taactacaaa 5280 tcttatagag attttaggat tttgagtgca ttagctgcag cagtgcaaga acgatataga 5340 actaatgaag atgcgttagc tgctttgatt agtttgcgga agtacatatc ggattttagt 5400 ttgttttcta gtatgtttgg gtataaaggg ggttttgttg agagtaaggt aagtaaggat 5460 tatgagtggt gagagttaag actaggtcgt ggctcttttt gtttttctta tttactggtt 5520 ttcaacatgg ccaacccaac ttcccttaaa agtaacaaac ttggtgatgt ctctgccgat 5580 tcgcttgagg cgatgattaa cggtatgatg gaagatttgg agaacaaaga gttcgacgaa 5640 gaagacttaa ggacaaacag gtctagagct tacaacgtgg aatcgaaatt tatgcggaag 5700 ccgctggttt ctgacaaagt gtggaagcga ctgaaggatc gttaccagca gtggtcaaaa 5760 tctaacaagg agatggggac ggcgtttaat gtcactttcg aaaacattat gctgaatgtg 5820 gttcccaatg ttcctgaagg ttactctggt actacgaaaa tttccttggc cgatacgggc 5880 ttaactttat cgcaacaagt cattccagat caagaacaga cgatggaatt gggtgctggt 5940 ccgcacgtta tgtatttcaa tatgcactac agcataccac tgaacgacga ccgccctatt 6000 gtcttacaat ttgagacaga ctgtgaaatg gctaactctt cgatgagtgt gatgacagtt 6060 tttgcctatt ggaaagtgtc ctttaacttt agatctactt attacaaacc acagaggtcc 6120 acatgcacga aattgctggt cggttacaag aaggacacgc gaatgaagga tgcgaaagat 6180 gttcgtgctt ttgtagctcg ttcactggtc atcgaacgca tgcttaatga ccgcccttac 6240 gtactgcctg atagcgttaa tgtggtgaaa gaggccttta agaagaagga agctgatggg 6300 acgacgagtg ctattcctga gaaaggtgaa tttgttgatc ctatgttgaa actgaactcg 6360 gttgcgcgta gaaaagcaag agagtctgcg ggcaacatga cgttgaagga tagagaaaag 6420 gctgctaaag agggtatgag aactgaagaa gcagatcaga aagttaaacc gaaggcagac 6480 atacaatttg gaagtgtaca gcagttataa atgtactact atacgtgtgt gtgttgtatt 6540 tccttatgta gttatttctt cataagaaaa ttaacctact tgcttggacg gaaagcaagc 6600 gaacctgttt cgatatgcag gagtctgcgt ctctaagact gtaaaattta gagagaccta 6660 cacattcggg ttgtgattgt gcgtggttcc gacgatacgg aactgtccac cgtgaaggac 6720 ataaaatgtc acgggtctta tccctaggcg ctacagatgt aattgacgaa agatctgtat 6780 ttgtctatga tgggatgtgg tgggttgcca cagctgctat gacacagcag ttaagagggg 6840 ttcgactccc cccctgaacc ggagggttat ccggccca 6878 //