ID AB025946; SV 2; circular; genomic DNA; STD; VRL; 3808 BP. XX AC AB025946; XX DT 04-JUL-1999 (Rel. 60, Created) DT 04-NOV-2009 (Rel. 102, Last updated, Version 5) XX DE Torque teno virus 19 DNA, complete genome, isolate: TTV SANBAN. XX KW . XX OS Torque teno virus 19 OC Viruses; Anelloviridae; Alphatorquevirus. XX RN [1] RP 1-3808 RA Hijikata M.; RT ; RL Submitted (07-APR-1999) to the INSDC. RL Contact:Minako Hijikata Toshiba General Hospital, Department of Medical RL Sciences; 6-3-22 Higashi Oh-i, Shinagawa-ku, Tokyo 140-8522, Japan XX RN [2] RX DOI; 10.1006/viro.1999.9797. RX PUBMED; 10405352. RA Hijikata M., Takahashi K., Mishiro S.; RT "Complete circular DNA genome of a TT virus variant (isolate name SANBAN) RT and 44 partial ORF2 sequences implicating a great degree of diversity RT beyond genotypes"; RL Virology 260(1):17-22(1999). XX DR MD5; 479b1624bfad92bae24850993ab048fb. DR EuropePMC; PMC102036; 11024126. DR EuropePMC; PMC111492; 10627568. DR EuropePMC; PMC112290; 10906223. DR EuropePMC; PMC2819036; 20044930. DR EuropePMC; PMC3437454; 23008723. DR EuropePMC; PMC434092; 15220423. DR EuropePMC; PMC516427; 15367649. XX FH Key Location/Qualifiers FH FT source 1..3808 FT /organism="Torque teno virus 19" FT /isolate="TTV SANBAN" FT /mol_type="genomic DNA" FT /note="Complete nucleotide sequence of the closed circular FT ssDNA genome of a TTV variant, exhibiting only 57% identity FT to the prototype TTV isolate" FT /note="isolate from human serum" FT /note="originally submitted as 'TT virus'" FT /db_xref="taxon:687358" FT regulatory 82..85 FT /regulatory_class="TATA_box" FT CDS 236..727 FT /codon_start=1 FT /note="ORF2" FT /db_xref="InterPro:IPR004118" FT /db_xref="InterPro:IPR008474" FT /db_xref="UniProtKB/Swiss-Prot:Q9WSV8" FT /protein_id="BAA82148.1" FT /translation="MGKALRVFILNMFLGRVYRHKKRKVLLRSLRAPQAPRRAMSWRPP FT VHDAPGIERNWYEACFRAHAGSCGCGNFIAHINLLAGRYGFTGGPPPPGGPPPGTPQVR FT ASRNSPAAPQQPPALPWHGDGGEGGAAGPPGAGGDAAADAHLGDEELADLLDAIEDDAQ FT " FT CDS 595..2832 FT /codon_start=1 FT /note="ORF1" FT /db_xref="GOA:Q9WSV7" FT /db_xref="InterPro:IPR004219" FT /db_xref="UniProtKB/Swiss-Prot:Q9WSV7" FT /protein_id="BAA82149.2" FT /translation="MAWGWWRRWRRWPARRWRRRRRRRPLRRRRAGRPARRYRRRRTVR FT TRRRRWGRRRYRRGWRRRTYVRKGRHRKKKKRLILRQWQPATRRRCTITGYLPIVFCGH FT TKGNKNYALHSDDYTPQGQPFGGALSTTSFSLKVLFDQHQRGLNKWSFPNDQLDLARYR FT GCKFIFYRTKQTDWIGQYDISEPYKLDKYSCPNYHPGNLIKAKHKFLIPSYDTNPRGRQ FT KIIVKIPPPDLFVDKWYTQEDLCSVNLVSLAVSAASFLHPFGSPQTDNPCYTFQVLKEF FT YYQAIGFSATDESRNYVFNVLYEENSYWESNITPFYVINVKKGSNTXDYMSPXISDSHF FT RNKVNTNYNWYTYNAKSHKNDLHXLRRAYFKQLTTEGPQQTSSEKGYASQWTTPTTDAY FT EYHLGMFSTIFLAPDRPVPRFPCAYQDVTYNPLMDKGVGNHVWFQYNTKADTQLIVTGG FT SCKAHIEDIPLWAAFYGYSDFIESELGPFVDAETVGLICVICPYTKPPMYNKTNPMMGY FT VFYDRNFGDGKWIDGRGKIEPYWQVRWRPEMLFQETVMADIVQTGPFSYKDELKNSTLV FT AKYKFYFTWGGNMMFQQTIKNPCKTDGRPTDSDRHPRGIQVADPEQMGPRWVFHSFDWR FT RGYLSEGAIKRLHEKPLDYESYFTQPKRPRIFPPTEAAEGEFREPEKGSYSEEERSQAS FT AEEQATEETVLLLKRRLREQRKLEQQLQFLTREMFKTQAGLHINPMLLSQR" FT regulatory 3010..3015 FT /regulatory_class="polyA_signal_sequence" FT stem_loop 3153..3251 FT misc_feature 3697..3808 FT /note="GC-rich stretch" XX SQ Sequence 3808 BP; 993 A; 1087 C; 959 G; 762 T; 7 other; aagtccgtca ctaaccacgt gacccgtctc gcccaaccag agtctatgtc gttcatttcc 60 tgggcgtggt gtacatcctg atataactaa ctgcacttcc gaatggctga gttttccacg 120 cccgtccgca gcgagggagc gacggaggag ctcccgagcg tcccgagggc gggtgccgga 180 ggtgagctta cacaccgcag tcaaggggca attcgggctc gggactggcc gggctatggg 240 caaggctctt agggtcttca ttcttaatat gtttctcggc agagtttacc gccacaagaa 300 aaggaaagtg ctactgcgat cactgcgagc tccacaggcg cctcgcaggg ctatgagctg 360 gcgtcccccg gtacacgatg cgcccggcat cgagcgcaat tggtacgagg cctgtttccg 420 agcccatgct ggatcttgtg gttgtggcaa ttttattgct cacattaatc ttctggctgg 480 gcgttatggt tttactgggg gcccgccgcc gccgggtggt cctcctccgg gcaccccgca 540 ggtgagagcc tcccgtaact ctcccgcggc acctcagcaa ccccctgccc tgccatggca 600 tggggatggt ggagaaggtg gcgccgctgg cccgccaggc gctggaggag acgccgccgc 660 cgacgcccac ttaggagacg aagagctggc cgacctgctc gacgctatcg aagacgacgc 720 acagtaagaa ccaggcgaag gcggtggggt cgcagacggt acaggcgggg atggcgacgc 780 aggacttatg tgaggaaggg gcgacacaga aaaaagaaaa agagactcat actgagacag 840 tggcagcccg ccaccagacg cagatgcacc ataacggggt acctccccat agtgttctgc 900 ggccacacca agggcaataa aaactacgcc cttcactctg acgactacac cccccaagga 960 cagccctttg gaggggccct tagcactacc tccttctctt taaaagtact gtttgaccag 1020 catcagagag gactgaacaa gtggtctttc cccaacgacc agctagacct ggccagatac 1080 aggggctgta aatttatatt ctacaggact aaacaaactg actggatagg scagtatgac 1140 atatcagaac cttacaagct agacaagtac agctgtccca actaccaccc gggtaacctc 1200 atcaaggcaa aacacaaatt tttaatcccc agctatgaca ctaatcccag gggcagacaa 1260 aagataatag taaaaattcc ccccccagac ctcttcgtag acaagtggta cactcaggaa 1320 gacctgtgtt ccgttaatct tgtgtcactt gcggtttctg cggcttcctt tctccaccca 1380 ttcggctcac cacaaactga caacccttgc tacaccttcc aggtgttgaa agagttctac 1440 tatcaggcaa taggcttyag tgcaactgay gaatcaagaa actatgtatt taacgtttta 1500 tacgaggaaa actcttactg ggaatcaaac attactccct tttatgtaat taatgttaaa 1560 aaaggcagta acacargaga ctacatgtca cctmaaattt cagactcaca ctttagaaat 1620 aaggtaaata ccaactacaa ctggtatacc tacaatgcca aaagccacaa aaatgactta 1680 catgawctaa gaagagccta ctttaaacaa ctaaccactg aggggccaca acaaacatcc 1740 agtgagaagg gctacgccag tcagtggacc acccctacca cagacgccta cgagtaccac 1800 ctaggtatgt tcagtacaat attcctagca ccagacagac cagtacctag atttccctgc 1860 gcctatcaag atgtcacata caaccccctc atggacaaag gggtaggcaa ccacgtatgg 1920 tttcagtaca acacaaaggc agacactcaa ctcatagtaa cagggggctc ctgcaaagca 1980 cacatagaag acataccact gtgggcagcc ttctatggct acagtgactt catagagtca 2040 gagctaggcc ccttcgtgga cgcagagacc gtgggcctaa tctgtgtcat atgtccttac 2100 actaagcccc ccatgtacaa caagaccaat cccatgatgg ggtacgtatt ctatgacaga 2160 aactttggtg acggaaaatg gattgacgga cggggcaaaa tagaacccta ctggcaggtc 2220 agatggaggc ccgaaatgtt atttcaagag acagtaatgg cagacatagt gcagaccggg 2280 ccctttagtt acaaagacga gcttaaaaac agcaccctgg tagccaagta caaattctat 2340 ttcacctggg gaggtaacat gatgttccaa cagacgatca aaaacccgtg caagacggac 2400 ggacggccca ccgactccga tagacaccct agaggaatac aagtggcgga cccggaacaa 2460 atgggacccc gctgggtgtt ccactccttt gactggcgaa ggggctatct tagcgaggga 2520 gctatcaaac gcctgcacga gaaacctctc gactatgaaa gctattttac acaaccaaaa 2580 agacctagaa tctttcctcc aacagaggca gcagagggag agttccgaga gcccgaaaaa 2640 ggctcatatt cagaggaaga aaggtcgcaa gcctctgcag aagagcaggc gacggaggag 2700 acagtactcc tcctcaagcg acgactcaga gagcagcgga agctcgagca gcagctccaa 2760 ttcctcaccc gagaaatgtt caaaacgcaa gcgggtctcc acataaaccc tatgttatta 2820 agccagcgat aaatcaggtg tacatgtttc cagacagggc cccaaaaccc gtacccagca 2880 gccaagactg gcagcaggag tacgaggccg ccgccttctg ggacaggccc gtgcgccatc 2940 accttcattc accccccttc tacccccaat gcccctctcg cttctctgta aaattcagcc 3000 tgggctttaa ataaagtgca acttcactgt gcaaggccgt gggagtttca cttgtcggtg 3060 tctacctcta aaggtcacta agcactccga gcgtyagcga ggagtgcgac cctctctttc 3120 tgagcccccc tagacaggta ctcaacttct tcggagccgc gcgctacgcc ttcggctgcg 3180 cgcggcacct cagacccccg ctcgtgctga cacgctcgcg cgtgtcagac cacttcgggc 3240 tcgcgggggt cgggaatttt gctaaacaga ctccgaggtg ctcttggaca ctgagtgggc 3300 atatcagtaa cgaaagtgag tggggccaga cttcgccata aggcctttat cttcttgcca 3360 ttggatagtg gagaggggtt gccataacgc ggaccccgtt tttacccctt ccggactaca 3420 aaaatggccg tttccgtgac gtcacggccg ccattttaag taaggcggaa gcagctcggc 3480 atatacaaaa tgtcggcgga gcacttccgg cttacccaaa atgaaggcca atatcttccg 3540 ggtcataggt cacacctacg tcacaagtca cgtggggagg gttggcgtat agcccggaag 3600 tcaatcctcc cacgtggcct gtcacgtgac gtgtacgtca cagtcgccat tttcttttac 3660 aaaatggccg acttccttcc tcttttttaa aaataacggc tcggcggcgg cgcgcgcgct 3720 gcgcgcgcgc gccggggggc tgccgccccc cccggggaaa ggggggggcc ccccccgggg 3780 gggggtttgc cccccggccc cccccccg 3808 //