ID AB017613; SV 1; circular; genomic DNA; STD; VRL; 3818 BP. XX AC AB017613; XX DT 14-JUL-1999 (Rel. 60, Created) DT 04-NOV-2009 (Rel. 102, Last updated, Version 3) XX DE Torque teno virus 16 DNA, complete genome, isolate: TUS01. XX KW . XX OS Torque teno virus 16 OC Viruses; Anelloviridae; Alphatorquevirus. XX RN [1] RP 1-3818 RA Okamoto H.; RT ; RL Submitted (11-SEP-1998) to the INSDC. RL Contact:Hiroaki Okamoto Jichi Medical School, Immunology Division; RL Yakushiji 3311-1, Minamikawachi-machi, Kawachi-gun, Tochigi 329-0498, Japan XX RN [2] RX DOI; 10.1006/viro.1999.9769. RX PUBMED; 10388667. RA Okamoto H., Nishizawa T., Ukita M., Takahashi M., Fukuda M., Iizuka H., RA Miyakawa Y., Mayumi M.; RT "The entire nucleotide sequence of a TT virus isolate from the United RT States (TUS01): comparison with reported isolates and phylogenetic RT analysis"; RL Virology 259(2):437-448(1999). XX DR MD5; 5a85ab1306e8cf653953ada361f46a02. DR EuropePMC; PMC102036; 11024126. DR EuropePMC; PMC112290; 10906223. DR EuropePMC; PMC1143717; 15956568. DR EuropePMC; PMC3437454; 23008723. DR EuropePMC; PMC434092; 15220423. DR EuropePMC; PMC4660652; 26623023. DR EuropePMC; PMC516427; 15367649. DR EuropePMC; PMC86625; 10790123. XX FH Key Location/Qualifiers FH FT source 1..3818 FT /organism="Torque teno virus 16" FT /isolate="TUS01" FT /mol_type="genomic DNA" FT /note="originally submitted as 'TT virus'" FT /db_xref="taxon:687355" FT CDS 260..730 FT /codon_start=1 FT /transl_table=1 FT /note="ORF2" FT /db_xref="InterPro:IPR004118" FT /db_xref="UniProtKB/TrEMBL:Q9WT89" FT /protein_id="BAA82453.1" FT /translation="MHFRRVRAKRKLLLQAVRAPPKAPAMSFTTPTINAGIREQQWFES FT TLRSHHSFCGCGDPVLHFTNLATRFNYLPATSSPLDPPGPAPRGRPALRRLPALPSAPA FT TPSRELAWPTGSEGGAGGRGAGGEGGAAVEGDYREEELDELFAALEEDANQG" FT CDS 592..2877 FT /codon_start=1 FT /transl_table=1 FT /note="ORF1" FT /db_xref="GOA:Q9WT88" FT /db_xref="InterPro:IPR004219" FT /db_xref="UniProtKB/TrEMBL:Q9WT88" FT /protein_id="BAA82454.1" FT /translation="MAYWFRRWGWRPRRRWRRWRRRRRRLPRRRTRRAVRGLGRRRKPR FT VRRRRRTRRRTYRRGWRRRRYIRRGRRKKKLILTQWNPAIVKRCNIKGGLPIIICGEPR FT AAFNYGYHMEDYTPQPFPFGGGMSTVTFSLKALYDQYLKHQNRWTFSNDQLDLARYRGC FT KLRFYRSPVCDFIVHYNLIPPLKMNQFTSPNTHPGLLMLSKHKIIIPSFQTRPGGRRFV FT KIRLNPPKLFEDKWYTQQDLCKVPLVSITATAADLRYPFCSPQTNNPCTTFQVLRKNYN FT TVIGTSVKDQESTQDFENWLYKTDSHYQTFATEAQLGRIPAFNPDGTKNTKQQSWQDNW FT SKKNSPWTGNSGTYPQTTSEMYKIPYDSNFGFPTYRAQKDYILERRQCNFNYEVNNPVS FT KKVWPQPSTTTPTVDYYEYHCGWFSNIFIGPNRYNLQFQTAYVDTTYNPLMDKGKGNKI FT WFQYLSKKGTDYNEKQCYCTLEDMPLWAICFGYTDYVETQLGPNVDHETAGLIIMICPY FT TQPPMYDKNRPNWGYVVYDTNFGNGKMPSGSGQVPVYWQCRWRPMLWFQQQVLNDISKT FT GPYAYRDEYKNVQLTLYYNFIFNWGGDMYYPQVVKNPCGDSGIVPGSGRFTREVQVVSP FT LSMGPAYIFHYFDSRRGFFSEKALKRMQQQQEFDESFTFKPKRPKLSTAAAEILQLEED FT STSGEGKSPLQQEEKEVEVLQTPTVQLQLQRNIQEQLAIKQQLQFLLLQLLKTQSNLHL FT NPQFLSPS" XX SQ Sequence 3818 BP; 1090 A; 1088 C; 862 G; 778 T; 0 other; cccgaagtcc gccactaacc acgtgactcc cgcaggccaa cccagtacta tgtcgtccac 60 ttcctgggac gagtctacgt cctgatataa gtaagtgcac ttccgaatgg ctgagttttc 120 cacgcccgtc cgcagcgaga acgccacgga ggggagtccg cgcgtcccga gggcgggtgc 180 cggaggtgag tttacacacc gcagtcaagg ggcaattcgg gctcgggact ggccgggccc 240 cgggcaaggc tcttaaaaaa tgcactttcg cagagtgcga gcgaaaagga aactgctact 300 gcaagctgtg cgagctccac cgaaggcacc tgccatgagc ttcaccacac ctactattaa 360 tgccgggatc cgagagcagc aatggttcga gtccaccctt agatcccacc actcgttctg 420 tggctgtggt gatcccgtgc ttcattttac taaccttgct actcgcttta actatctgcc 480 tgctacctct tcgcctctgg accctcccgg cccagcgccg cgaggccgcc cggcgctccg 540 ccgcctcccg gcactccctt cagcccccgc gaccccttct agagaactag catggcctac 600 tggttcagaa ggtggggctg gaggccgagg cgccggtgga gaaggtggcg ccgccgtcga 660 aggagactac cgagaagaag aactagacga gctgttcgcg gccttggaag aagacgcaaa 720 ccaagggtaa ggaggcgccg cagaactcgc agacgtacct acagacgggg gtggagacgc 780 aggaggtaca taagacgggg gcgacgcaaa aagaaactca tactgactca gtggaacccg 840 gcaatagtta agaggtgcaa cattaagggc ggacttccaa taattatatg cggagagccc 900 agggcagcct ttaactatgg ctaccacatg gaggactaca ctcctcaacc tttccccttc 960 ggagggggaa tgagcacagt gactttctct ctgaaagcct tgtatgacca gtacctaaaa 1020 caccaaaaca ggtggacttt ctcaaacgac cagctagacc tcgccagata caggggctgt 1080 aaactaaggt tctacagaag ccccgtctgt gactttatag tacactacaa cctaatacct 1140 ccactaaaaa tgaaccagtt cacaagtccc aacacgcacc cgggactact catgctcagc 1200 aaacacaaga taataattcc cagctttcaa acaagacctg ggggcagacg ctttgttaaa 1260 ataagactta atccccccaa actatttgaa gacaagtggt acactcagca agacctgtgc 1320 aaggttccgc tcgttagtat tacagcaact gcggctgact tgcggtatcc gttctgctca 1380 ccacaaacga acaacccttg caccaccttc caggtactgc gcaagaacta caatacagtt 1440 ataggaactt ccgtaaaaga ccaagagtcc acacaagact ttgaaaattg gctttataaa 1500 acagactcac actatcaaac atttgccaca gaggctcaac taggcagaat tcctgcattt 1560 aatcctgatg gcactaaaaa cactaaacag cagtcgtggc aagataactg gagcaaaaaa 1620 aattcaccat ggacaggtaa ctcaggtaca tacccacaaa caaccagtga aatgtacaaa 1680 attccatatg acagtaactt cggctttccc acatacagag cccaaaaaga ctacatttta 1740 gaaagaagac agtgcaactt taactatgaa gttaataatc cagttagcaa aaaagtatgg 1800 ccacaaccta gtacaacaac acccacagta gactactatg aataccactg tggatggttc 1860 agcaacatat tcataggccc caacagatac aacctacagt ttcaaacagc atatgtagac 1920 accacataca acccactaat ggacaagggc aaaggcaaca aaatatggtt tcaatatctg 1980 tctaaaaagg gcacagacta caatgaaaaa caatgctact gcaccctaga agacatgccc 2040 ctatgggcaa tatgctttgg atacactgac tatgtagaga ctcaactagg acccaatgtg 2100 gaccatgaaa cagcaggctt aataattatg atctgtccat acactcaacc acctatgtat 2160 gacaaaaaca gacctaactg gggatacgta gtctatgaca caaactttgg caatggaaaa 2220 atgccctcag gaagtggcca agtcccagta tactggcaat gccgatggag gcccatgctg 2280 tggttccaac aacaagtact caatgacatc tcaaagactg gaccgtacgc ctacagagac 2340 gaatataaaa atgtacaact gactctctac tacaacttta tttttaactg ggggggcgac 2400 atgtattacc cacaggtcgt taaaaacccc tgtggagact ccggaatcgt tcccggttcc 2460 ggtagattca ctcgagaagt acaagtcgtt agcccgcttt ccatgggacc ggcctacatc 2520 ttccactact tcgactccag acgcgggttc tttagtgaaa aagctcttaa aagaatgcaa 2580 caacaacaag aatttgatga atcttttaca ttcaaaccta agagacccaa actttctaca 2640 gcagccgcag aaatcctcca gctcgaagaa gactcgactt caggggaagg aaaatcgcca 2700 ctacagcaag aagagaaaga agtcgaagtc ctccaaacgc cgacagtaca gctccagctc 2760 cagcgaaaca tccaggagca gctcgcaatc aagcagcagc tccaattcct cttgctccaa 2820 ctcctcaaaa cccaatccaa tttgcattta aacccacaat ttttaagccc ttcataaaat 2880 atgacatgtt tggggacccc cttcctcacc ccccaacagc cgaagagtgg gaaacagagt 2940 accagtgctg taaggccttt aacagaccac ctagaaccaa cctaaaagac acccccttct 3000 acccctgggt acctaaacct aaacctcaat tccgtgtatc ttttaaactt ggttttcaat 3060 aaacaaggcc gtgggagttt cacttgtcgg tgtcaacctc ttaaggtcac taagcactcc 3120 gagcgtaagc gaggagtgcg accctccccc ctggggcaac tccctcgaag tccggcgcta 3180 cgcgcttcgc gctgcgccgg acatctcgga ccccccctcc acccgaaacg cttgcgcgtt 3240 tcggaccttc ggcgtcgggg gggtcggggg ctttactaaa cagactccga ggtgccattg 3300 gacactgagg ggatgaacag caacgaaagt gagtggggcc agacttcgcc ataaggcctt 3360 tatcttcttg ccatttgtca gtatagaggg tcgccatagg cttcggcctc cattttaacc 3420 tctaaaaact accaaaatgg ccgttccagt gacgtcacag ccgccatttt aagtagctga 3480 cgtcaaggat tgacgtgaag gttaaaggtc atcctcggcg gaagctacac aaaatggtgg 3540 acaacatctt ccgggtcaaa ggtcgtgcac acgtcataag tcacgtggtg gggacccgct 3600 gtaacccgga agtaggcccc gtcacgtgat ttgtcacgtg tgtacacgtc acaaccgcca 3660 ttttgtttta caaaatggct gacttccttc ctctttttta aaaaaaacgg ccgtgcggcg 3720 gcgcgcgcgc ttcgcgcgcg cgccgggggc tgccgccccc ccccgcgcat gcgcgcgggg 3780 cccccccccg cggggggctc cgccccccgg cccccccc 3818 //