Dbfetch
ID AB017504; SV 1; linear; genomic RNA; STD; VRL; 6297 BP. XX AC AB017504; XX DT 10-JAN-2002 (Rel. 70, Created) DT 10-APR-2012 (Rel. 112, Last updated, Version 5) XX DE Wasabi mottle virus genomic RNA, complete genome, isolate: Tochigi. XX KW . XX OS Wasabi mottle virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6297 RA Lee K., Nishiguchi M., Kashiwazaki S.; RT ; RL Submitted (07-SEP-1998) to the INSDC. RL Contact:Satoshi Kashiwazaki National Agriculture Research Center, RL Department of Plant Protection; 3-1-1 Kannondai, Tsukuba, Ibaraki 305-8666, RL Japan XX RN [2] RA Lee K., Nishiguchi M., Kashiwazaki S.; RT "Complete nucleotide sequences of two isolates of crucifer tobamovirus"; RL Unpublished. XX RN [3] RX DOI; 10.1007/s007050050418. RX PUBMED; 9787663. RA Shimamoto I., Sonoda S., Vazquez P., Minaka N., Nishiguchi M.; RT "Nucleotide sequence analysis of the 3' terminal region of a wasabi strain RT of crucifer tobamovirus genomic RNA: subgrouping of crucifer RT tobamoviruses"; RL Arch. Virol. 143(9):1801-1813(1998). XX DR MD5; cb68b858a18c3a258a3e4d2d25e6995e. DR EuropePMC; PMC5282660; 28137291. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6297 FT /organism="Wasabi mottle virus" FT /strain="wasabi" FT /isolate="Tochigi" FT /mol_type="genomic RNA" FT /db_xref="taxon:1169032" FT CDS 66..4859 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:3375..3377,aa:Tyr) FT /product="RNA replicase readthrough protein" FT /note="readthrough product" FT /db_xref="GOA:Q8V9A2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8V9A2" FT /protein_id="BAB82444.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAVFGYISRLKRQRRPVPEYQ FT RAAFNNYSENPHFVHCDQPFQQCALSTVNGDDTYAVALHSIYDIPVEEFGGALLRKNVK FT VCYAAFHFHENMLLDCDTVTLEEIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYKNSVDSDEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAAINFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLGHVQDEIVLKKFQKFDSTAKELIWTSLCDALMGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRAEEFKSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KELCQKKSVDPDVAAKVVVAIMKSELTLPFKKPTEEEIAESLSNDTTRNEGLSLSNTAP FT FPCVSNLEGGLVPACGLCPKSGGFDKIDMDISEFHLKSVDAVKKGAMMSAVYTGNIKVQ FT QMKNFVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRERWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDDGKPVCDQTWYRLAVSSDSLVYSDMGKLKTLTSCCVDGEPP FT EPKAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVTRADRDN FT VKTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRV FT ANFPYPKHFARLVVDEKEDRRITLRCPADVTFFLNKKYDGSVLCTSSVERSVSAQVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTSCKYFTVVLDPLVSVISEMEKLSNFILDMYKVESGTQYQLQ FT IDAVFKGVNLNVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCR FT IDFSKSVQVPKEKPVFLKPKIRTAAEMPRTAGLIENLVAMIKRNMNAPDLTGTIDIEDT FT ASLVVEKFWDSYIIKEFSGIEGMAKTREGFSRWLSKQESSTVGQLADFNFVDLPAVDEY FT KHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERVDTSKFLF FT YTRKTPTQIEEFFSDLDSSQAIEILELDVSKYDKSQNEFHCAVEYKIWEKLGIDEWLAE FT VWRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMEKVIKAAF FT CGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYLCGRYVIHHDRGAIVYYDPL FT KLISKLGCKHIKDEVHLEELRRSLCDVASNLNNCAYFSQLDEAVAEVHKTAVGGSFAYC FT SIIKYLSDKRLFKDLFFV" FT CDS 66..3377 FT /codon_start=1 FT /transl_table=1 FT /product="RNA replicase protein" FT /db_xref="GOA:Q8V9A1" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8V9A1" FT /protein_id="BAB82445.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAVFGYISRLKRQRRPVPEYQ FT RAAFNNYSENPHFVHCDQPFQQCALSTVNGDDTYAVALHSIYDIPVEEFGGALLRKNVK FT VCYAAFHFHENMLLDCDTVTLEEIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYKNSVDSDEFYKAMDDAWE FT YKKTLAMLNAERTIFKDNAAINFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLGHVQDEIVLKKFQKFDSTAKELIWTSLCDALMGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRAEEFKSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KELCQKKSVDPDVAAKVVVAIMKSELTLPFKKPTEEEIAESLSNDTTRNEGLSLSNTAP FT FPCVSNLEGGLVPACGLCPKSGGFDKIDMDISEFHLKSVDAVKKGAMMSAVYTGNIKVQ FT QMKNFVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRERWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDDGKPVCDQTWYRLAVSSDSLVYSDMGKLKTLTSCCVDGEPP FT EPKAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVTRADRDN FT VKTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRV FT ANFPYPKHFARLVVDEKEDRRITLRCPADVTFFLNKKYDGSVLCTSSVERSVSAQVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTSCKYFTVVLDPLVSVISEMEKLSNFILDMYKVESGTQ" FT CDS 4862..5665 FT /codon_start=1 FT /transl_table=1 FT /product="movement protein" FT /db_xref="GOA:Q786D6" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q786D6" FT /protein_id="BAB82446.1" FT /translation="MSTVSYKPKVSDFLTLSRTEEILPKALTRLKTVSVSTKDVISVKE FT SESLCDIDLLVNVPLDKFRYVGILGVVFTGEWLIPDFVKGGVTVSVIDKRLENSKECII FT GTYRAAAKDRRFQFKLVPNYFVSVTDAKRKPWQVHVRIQNLKIEAGWQPLALEVVSVAM FT VTNNVVVKGLRERVIAVDDPNVEGFEGVVDEFIDSVAAFKAVDNFRKKKKKIGGRDVIS FT KYKYRPEKYAGPDSLLNKEENVIQHHELESVPVFRSGMGGAHSNA" FT CDS 5589..6062 FT /codon_start=1 FT /transl_table=1 FT /product="coat protein" FT /db_xref="GOA:Q786D5" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q786D5" FT /protein_id="BAB82447.1" FT /translation="MSYNITNSNQYQFFAAVWAEPIAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPETGYRVYVNSAVLKPLYEALMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLSELSSGHGLMNRAEFEVLIPWATAPAK" XX SQ Sequence 6297 BP; 1807 A; 1147 C; 1591 G; 1752 T; 0 other; gtttaaatta ttgcaacaac aacaacaaat tacaataata acaaacaaat acaaacaaca 60 acaacatggc acaatttcaa caaacaattg acatgcaaac acttcaggct gcagcgggac 120 gtaacagcct ggtcaacgat ttagcctctc gacgtgttta cgataacgcg gtcgaggagt 180 taaatgcgcg ttcaagacgt cctaaggttc atttctccaa gtcggtgtcg acggaacaga 240 cactactagc ttcaaacgct tatccggagt ttgagatttc cttcactcat acccaacatg 300 ccgtacattc acttgccggc gggttgcggt ctcttgagct ggaatatctc atgatgcaag 360 ttcctttcgg atctctgacg tatgacatcg gcggtaactt tgctgcgcac ctttttaagg 420 gtcgtgacta cgtgcactgc tgtatgccaa atttggacgt tcgcgatata gctcgccatg 480 aaggacataa ggaagccgtt ttcggctaca tctcccgctt gaaaaggcaa aggagacctg 540 ttcctgagta tcagagagct gcgttcaaca actactcgga gaatccgcat ttcgttcatt 600 gtgaccaacc ttttcaacag tgtgccttaa gtactgtgaa cggtgacgac acttatgctg 660 ttgcccttca cagtatatac gacattcctg ttgaggagtt cggtggtgcg ctactcagga 720 agaacgtcaa agtttgttat gcggctttcc atttccatga gaatatgcta cttgattgtg 780 acacagtcac tcttgaggag attggagcta catttcaacg tgcaggcgac aagttaaact 840 ttttcttcca caatgagagc actctcaact atacccacag ttttagtaat ataattaagt 900 atgtgtgtaa aacttttttc cccgccagtc agcggtttgt gtatcataag gagtttttag 960 ttacaagagt caatacgtgg tattgtaagt tcactagagt ggacactttt actctttttc 1020 gtggtgtgta caaaaatagt gtcgatagcg atgagtttta taaggctatg gatgacgcat 1080 gggaatacaa gaagacttta gctatgttaa atgccgagag gactatcttc aaggataacg 1140 cggctattaa tttttggttt ccgaaggtca gagatatggt catcgttcct cttttcgacg 1200 catccatcac aacaggaagg atgtctagaa gagaagttat ggtgaataag gattttgttt 1260 atacagtcct caaccatatt aaaacatatc aggcaaaggc tttgacttac gctaacgtac 1320 tgtcctttgt agagtctatc aggtcgagag tcataattaa tggggtcaca gctaggtctg 1380 agtgggatac ggataaggca attctaggtc cgttagcaat gacctttttc cttgttacaa 1440 agttaggtca tgtccaggat gaaatagtcc tgaagaagtt ccaaaagttt gattcgaccg 1500 ccaaagagct gatttggact agtctctgcg atgccctgat gggggttata ccctcggtca 1560 aagagacgtt agcacgtggt ggttttgtca aactcgctga agagagtttg gagatcaaga 1620 ttccagaact gtattgcact ttcacagaca ggttagtgct ggagtacaaa agagctgaag 1680 agttcaagtc ttgtgatctg tctaaaccgt tagaagagtc ggagaaatac tacaacgctt 1740 tatccgagct gtctgtgctc gagaacctcg actcttttga cttggaagcc tttaaagagt 1800 tgtgccagaa gaaaagcgtt gatccagatg tcgctgcaaa ggtggtggtg gcgataatga 1860 aaagtgagtt gacgttaccg ttcaagaaac ctactgagga agaaatcgcg gagtcgctta 1920 gcaatgatac aacacggaat gagggtttga gtctgagtaa caccgcacct ttcccgtgtg 1980 tgagcaatct cgagggaggg ttggtgccag cgtgcgggct gtgtccgaaa agtggtggtt 2040 tcgacaagat tgatatggat atatctgagt tccatctcaa gagtgtagat gcagttaaaa 2100 aaggggctat gatgtcagcg gtgtacacag ggaacatcaa ggttcagcag atgaagaact 2160 ttgtagatta cctaagtgcg tcactgtcag ctactgtctc aaatctctgt aaggtgctta 2220 gagatgttca tggggtagat ccagagtcac aggagaaatc cggagtgtgg gatgtgagaa 2280 gagaacgatg gttactaaaa cctaacgcga aatgtcacgc gtggggagtt gcggaagatg 2340 ccaatcacaa gttggttatc gtgttactta actgggatga tggaaaacct gtctgcgatc 2400 agacatggta tcgattggcg gtgtcaagtg attctttggt gtattccgat atggggaaac 2460 ttaaaacgtt gacgtcgtgc tgtgtggatg gcgaacctcc agagcctaag gccaaggtgg 2520 ttcttgttga tggagttcca ggatgtggaa aaacgaagga aattctggag aaggttaact 2580 tctccgaaga tttggtttta gtccctggaa aggaggcgtc gaagatgatt atacgacgag 2640 cgaaccaggc aggagttacg agagctgata gggataacgt gaaaacagtg gattccttct 2700 taatgcaccc tccaaagagg gtatttaaga ggttgttcat tgatgaagga ttaatgctgc 2760 ataccggttg tgtcaacttt ttgacgctaa tttcgcaatg cgatatagca tacgtctacg 2820 gcgacacaca acagattccc tttatttgta gggttgcaaa ttttccgtat cccaaacatt 2880 ttgcaagact tgtcgttgat gaaaaggaag acagaaggat aacgctcaga tgccctgcag 2940 acgtcacttt tttccttaac aagaaatatg acggctcagt gttgtgtact agcagtgtgg 3000 aaagatcggt cagtgcgcag gttgtgagag ggaaaggtgc attaaacccg ataactttac 3060 cgttagaggg aaaaatttta accttcacgc aggccgacaa gttcgagtta ctagacaaag 3120 gctacaaaga tgtgaatacg gtccatgagg ttcaagggga aacatatgaa aaaacagcta 3180 ttgttcggtt aacggctact ccgttggaga tcatatctag ggcgtcacct catgttttgg 3240 tggcgctgac gagacacacg actagttgta aatattttac agtcgtgttg gatcctttag 3300 tgagtgtgat ttctgagatg gagaagttgt ccaatttcat ccttgacatg tacaaggtgg 3360 agtcgggaac ccaatagcaa ttacagatcg atgcggtgtt caaaggggtc aacttaaatg 3420 ttccgacgcc aaagtcagga gattggagag acatgcagtt ttattacgac actcttcttc 3480 ccggtaacag cactattctt aacgagtttg atgctgttac catgaatttg agggatatat 3540 ccctaaatgt caaagattgc agaatcgact tctctaaatc cgtgcaagtg cccaaagaaa 3600 aaccagtttt cttaaaaccc aagataagaa ctgcggcaga aatgccgaga actgctgggt 3660 taatagagaa tttggttgca atgatcaaga gaaatatgaa tgcaccggat ttgactggga 3720 cgatagatat agaggacact gcatcactgg tggttgaaaa gttttgggac tcgtacatca 3780 taaaggagtt cagcggaatt gaggggatgg caaagacaag ggaaggtttt tctagatggc 3840 tttctaaaca agagtcgtct acggtcggtc agttagcgga ttttaacttt gtggatttgc 3900 ctgcagttga tgagtacaag catatgatca agagtcagcc taagcaaaag ttagacttga 3960 gtattcaaga tgaatatcct gctttgcaga cgatagtcta ccattcaaaa aagatcaatg 4020 caattttcgg tcctatgttt tcagaactta cgagaatgct tcttgaaaga gttgatacat 4080 ctaagtttct gttttacact aggaaaacgc caactcagat tgaggaattt ttctcagacc 4140 tcgattcgtc gcaagcaata gaaattttgg aactcgacgt ttcaaagtac gacaagtctc 4200 agaacgagtt ccattgtgct gtggaataca agatatggga gaagcttgga atagacgagt 4260 ggttggcaga ggtgtggcga caagggcaca ggaaaacgac gttgaaagac tatacggccg 4320 ggatcaaaac gtgtttgtgg tatcagagga aaagcggtga tgtaactacc tttattggga 4380 acaccatcat catcgctgcg tgcttaagtt ctatgattcc gatggaaaag gtgattaaag 4440 cagcattctg cggtgacgac agtttgattt atattccgaa aggtttagat ctgccggata 4500 ttcaagctgg agccaacctg acgtggaatt tcgaggcgaa gctctttagg aaaaagtatg 4560 gttatttgtg cggtcgatat gtaatccacc atgatagagg agctattgta tattacgatc 4620 cacttaagct aatatctaag ttaggttgta aacatataaa ggatgaggtc catttagaag 4680 agttacgtag gtctctgtgt gatgtagcta gtaacttaaa taattgtgcg tatttttctc 4740 aattagatga ggccgttgcc gaggttcata aaaccgcggt tggcggatcg tttgcttatt 4800 gtagtataat taaatacttg tcagataaaa ggttgtttaa agatttgttt tttgtttgat 4860 aatgtcgacc gtgtcgtaca agcctaaggt gagtgacttt cttactcttt cgagaacgga 4920 ggaaatttta ccgaaagctt taacgagatt gaagactgtg tctgtaagta ctaaggatgt 4980 catatcagtt aaggaatctg agtctttgtg tgatatagat ttgttagtta atgtgccatt 5040 agataagttt agatacgtgg gtattctagg agttgttttt actggcgagt ggcttattcc 5100 ggatttcgtt aagggtggtg taacggtgag tgtgattgac aagcgtctgg agaactcgaa 5160 ggagtgtata attggtacgt acagagctgc tgctaaggac agaaggtttc agtttaagct 5220 ggtgcctaac tactttgtgt ctgtaacgga cgctaagaga aaaccgtggc aggttcatgt 5280 gcgtattcaa aacctgaaga ttgaagctgg atggcaaccg ttggctctgg aagttgtttc 5340 cgtagctatg gttacaaaca atgtggttgt gaagggttta agagaaagag tcatcgctgt 5400 agatgatccg aacgttgagg gtttcgaagg tgtagttgac gaattcatcg attcggttgc 5460 agcatttaaa gcggttgaca atttcaggaa aaagaaaaag aagattggag gaagggatgt 5520 gattagtaag tataagtata gaccagagaa gtacgccggt cctgattcgt tacttaataa 5580 agaagaaaat gtcatacaac atcacgaact cgaatcagta ccagtttttc gcagcggtat 5640 gggcggagcc catagcaatg cttaaccagt gcgtatctgc gttgtcacag tcgtatcaga 5700 cacaagctgc gagagatact gtcagacagc aattctcgaa cttgttaagt gcgattgtga 5760 caccgaacca gcggtttcca gaaacaggat accgggtgta tgttaattca gcagttctaa 5820 aaccgttgta cgaggctctt atgaagtctt ttgatactag aaataggatc attgagaccg 5880 aagaagagtc gcgtccttcg gcttccgaag tagccaatgc aacacaacgt gttgacgatg 5940 cgaccgtggc catcaggagt caaattcagc ttttgctgag tgagctttcc agtggacatg 6000 gtcttatgaa cagggcagag tttgaggttt taataccttg ggctactgcg ccggctaaat 6060 aggcgtggtg cacacgatag tgcatagtgt tttcctctcc acttaaatcg aagaggtatt 6120 cttacggtgt aaatccgtaa gggtggcgta aaccaaatta cgtaatgttt tgggttccat 6180 ttaaatcgaa acccgttatt tcctggatca cctgttaacg cacgcttggc gtgtattaca 6240 gtgggaataa ctaaaagtga gaggttcgaa tcctccctaa ccccgggtag gggccca 6297 //