ID AB015145; SV 1; linear; genomic RNA; STD; VRL; 6515 BP. XX AC AB015145; XX DT 03-DEC-1999 (Rel. 61, Created) DT 30-MAY-2006 (Rel. 87, Last updated, Version 5) XX DE Kyuri green mottle mosaic virus genomic RNA, complete sequence of strain DE Yodo. XX KW . XX OS Kyuri green mottle mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6515 RA Nishiguchi M.; RT ; RL Submitted (29-MAY-1998) to the INSDC. RL Masamichi Nishiguchi, Ehime University, Faculty of Agriculture; Tarumi RL 3-5-7, Matsuyama, Ehime 790-8566, Japan (E-mail:mnishigu@agr.ehime-u.ac.jp, RL Tel:81-89-946-9816, Fax:81-89-977-4364) XX RN [2] RX DOI; 10.1007/s007050070110. RX PUBMED; 10948983. RA Tan S.-H., Nishiguchi M., Murata M., Motoyoshi F.; RT "The genome structure of kyuri green mottle mosaic tobamovirus and its RT comparison with that of cucumber green mottle mosaic tobamovirus"; RL Arch. Virol. 145(6):1067-1079(2000). XX DR MD5; ade9364c4bd2d0e161bd983e0c9b2298. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6515 FT /organism="Kyuri green mottle mosaic virus" FT /strain="Yodo" FT /mol_type="genomic RNA" FT /db_xref="taxon:111970" FT 5'UTR 1..57 FT /note="5' non-coding region" FT CDS 58..5070 FT /codon_start=1 FT /transl_except=(pos:3556..3558,aa:OTHER) FT /product="RNA replicase" FT /note="189K protein" FT /note="readthrough product (premature stop codon at FT 3556..3558)" FT /db_xref="GOA:Q9IR67" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9IR67" FT /protein_id="BAA87615.1" FT /translation="MANITQQIIDTREAAAAGRNPLIAQLASKRVYDEAVKSLDTQDKR FT PKVNFSRVLSTEQMRVVTENYPEFSVSYTGSALSVHSLAGGLRYLEGEYLMMQVPYGSP FT CHYIGGNYSQHMLKGRSYVHCCNPCLDLKDVARNEMYKDAIERYVTKKRDGPRSVAWRS FT QAESSQETKFAGLPSWQMDAFRRYHSDPSSVTCPDVFQQCEHEFSRGGDRYAVALHSIY FT DVPCEQIGPALLRKNIKVLFAAFHFSEDLLIGSEFGRLPNVGAFFSVDGDSVNFQFEDE FT STLHYTHSFSNIRKIVTRTFFPASDRVVYVKEFMVKRVDTFFFRMVRVDTHMLHKSVGQ FT YQVSKNDYYSLKSSPVFQDKATFSVWFPQAKSKVVIPLFEMQGFFSGTLKSKKMLVDAT FT FIHTVINHICTYDNKALTWRNVQSFVESFGLGCMNGVSVRSEWDVPIEMLCDISFTVFL FT TVKVKVQIEIMSEKIVTQPQGLLLRLAQKVSDAFEGCTATIHAALMSTGWFRCQADELV FT VEAPELFMDFHDFLSAAWEADAKIEAANVESVLDASDRLYTTVNELCERYSGIEFDLEK FT FTDFCHHHDVNPSLIGTVIEAIFSQSAGITVTGLQAKSLEWAAAEALAPVDDDMDCSSD FT EEDAAPHDLKFPGLSAEEQRYLRDVRAKEASFIELQDTFNRKRVTETVTVGVGALPTLP FT KQWIAKGKAHLPQVGYSVGKNKYYADFNDDDIVAVRKIHLMETCNLRLKKSITPVIYTG FT PIRVRQMANYLDYLSASLTATIGNLERIVSSSWTGENELVQTYGLFDCQADKWILQPTE FT RTHSWGVCLTMDDKLRIVLLQYDEFDWPIVDKSSWKAFCVSADTKVFSIIRSLEVLSSL FT PLSDPTAKFTLIDGVPGCGKTQEIINSADFKTDLILTPGKESAAMIRRRANAKFRGCVA FT TNDNVRTFDSFVMNKKPFTFKTLWVDEGLMVHTGLLNFCVNIAKVKEVKIFGDTKQIPF FT INRVMNFDYPLELKKIIVDDVEKRYTSKRCPRDVTHYLNEVYAAPVTTSSAVVHSVSQK FT KIAGVGLLRPELTSLEGKIITFTQSDKQTLLKAGYEDVNTVHEVQGETYECTSVVRATA FT TPIGLISRKSPHVLVALSRHTKTMTYYTVTVDPVSCIIADLEKVDQSILSMYATVASPK FT XQLQQMSFQITENIVLPVSKAGFWTDMQSFYDACLPGNSFVLNDYDSVTMRLADNEFNL FT QPCRLTLSKADPVAESIKLERKNIDKLDLKTATERPRIPGFLENLVAIVKRNFNTPDLA FT GVLDIDTISKSVVDNFFTTFLRDEQLSDHLVRVRSCSLESFSAWFHNQATAAMGQLANF FT DFSDLPPVDMYTHMIKRQPKSKLDTSIQSEYPALQTIVYHSKLVNAVFGPVFRYLTSEF FT LSMVDNSKFFFYTRKTPEDLQSFFSTLSAKESYEILELDVSKYDKSQTDFHQAVEMLIW FT ERLGLDDVLARIWEMGHKKTSISDFQAGIKTVIYYQRKSGDVTTFIGNTFIIAACVASM FT IPLSRSFKASFCGDDSLIYMPPGLEYPDIQATANLVWNFEAKLFKKRYGYFCGKYVIHH FT SNGCIVYPDPLKLISKLGNKSLESYDHLEEFRISLMDVAKPLFNAAYFHLLDDAIHEYF FT PSVGGSSFAINSLCKYLSDKWLFRSLFAKSSV" FT CDS 58..3558 FT /codon_start=1 FT /product="RNA replicase" FT /note="131K protein" FT /db_xref="GOA:Q9QNC4" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9QNC4" FT /protein_id="BAA87616.1" FT /translation="MANITQQIIDTREAAAAGRNPLIAQLASKRVYDEAVKSLDTQDKR FT PKVNFSRVLSTEQMRVVTENYPEFSVSYTGSALSVHSLAGGLRYLEGEYLMMQVPYGSP FT CHYIGGNYSQHMLKGRSYVHCCNPCLDLKDVARNEMYKDAIERYVTKKRDGPRSVAWRS FT QAESSQETKFAGLPSWQMDAFRRYHSDPSSVTCPDVFQQCEHEFSRGGDRYAVALHSIY FT DVPCEQIGPALLRKNIKVLFAAFHFSEDLLIGSEFGRLPNVGAFFSVDGDSVNFQFEDE FT STLHYTHSFSNIRKIVTRTFFPASDRVVYVKEFMVKRVDTFFFRMVRVDTHMLHKSVGQ FT YQVSKNDYYSLKSSPVFQDKATFSVWFPQAKSKVVIPLFEMQGFFSGTLKSKKMLVDAT FT FIHTVINHICTYDNKALTWRNVQSFVESFGLGCMNGVSVRSEWDVPIEMLCDISFTVFL FT TVKVKVQIEIMSEKIVTQPQGLLLRLAQKVSDAFEGCTATIHAALMSTGWFRCQADELV FT VEAPELFMDFHDFLSAAWEADAKIEAANVESVLDASDRLYTTVNELCERYSGIEFDLEK FT FTDFCHHHDVNPSLIGTVIEAIFSQSAGITVTGLQAKSLEWAAAEALAPVDDDMDCSSD FT EEDAAPHDLKFPGLSAEEQRYLRDVRAKEASFIELQDTFNRKRVTETVTVGVGALPTLP FT KQWIAKGKAHLPQVGYSVGKNKYYADFNDDDIVAVRKIHLMETCNLRLKKSITPVIYTG FT PIRVRQMANYLDYLSASLTATIGNLERIVSSSWTGENELVQTYGLFDCQADKWILQPTE FT RTHSWGVCLTMDDKLRIVLLQYDEFDWPIVDKSSWKAFCVSADTKVFSIIRSLEVLSSL FT PLSDPTAKFTLIDGVPGCGKTQEIINSADFKTDLILTPGKESAAMIRRRANAKFRGCVA FT TNDNVRTFDSFVMNKKPFTFKTLWVDEGLMVHTGLLNFCVNIAKVKEVKIFGDTKQIPF FT INRVMNFDYPLELKKIIVDDVEKRYTSKRCPRDVTHYLNEVYAAPVTTSSAVVHSVSQK FT KIAGVGLLRPELTSLEGKIITFTQSDKQTLLKAGYEDVNTVHEVQGETYECTSVVRATA FT TPIGLISRKSPHVLVALSRHTKTMTYYTVTVDPVSCIIADLEKVDQSILSMYATVASPK FT " FT CDS 5073..5861 FT /codon_start=1 FT /product="movement protein" FT /note="28K protein" FT /db_xref="GOA:Q9QNC3" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q9QNC3" FT /protein_id="BAA87617.1" FT /translation="MSVSSVGVKNVLKPNEFVKLSWVDRILPDMFTVYRYLSVTDYSVI FT KSKDSECLIPVDLLRGVDLSKSKYVTLVGVVISGVWTIPENCAGGATVALVDTRMSMVD FT EGTICKFSVAASTRDFMVKLIPNYYVLASDASSKPWSIFVRVSGVRIKEGFSPLTLEIA FT SLVATTNSILKKGLRVSVLESVVGSDASINLDTVSDKVQPFFDSVPITAAVIARDRSYV FT SKSGPSRAVRQRPQFKGGKKGDADSAESMSDGGAYEPPRL" FT CDS 5866..6351 FT /codon_start=1 FT /product="coat protein" FT /note="17.2K protein" FT /db_xref="GOA:Q9QNC2" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q9QNC2" FT /protein_id="BAA87618.2" FT /translation="MSYSISSFRSLPAYTKSFYPFIEFYNLLVSSQGGALQTQNGKDIS FT RESLNGLLTSVASPKSRFPAGEAFVWSRESRIAAILDSLLSALDSRNRAIEVENPSNPS FT TGEALNATKRNDDASTAAHNDIPLLLAALNDGVGVFDTASFESAFGLTWTASSSSSN" FT 3'UTR 6352..6515 FT /note="3' non-coding region" XX SQ Sequence 6515 BP; 1651 A; 1383 C; 1553 G; 1928 T; 0 other; gaaagaatta cattaaacaa acaaagttta acaacaatta cttttataca caatacaatg 60 gcaaacatta cacaacaaat tattgataca agagaggctg ctgccgcggg acgtaatccg 120 ctgattgcgc agttagcctc aaaaagggtt tatgacgagg ctgtgaagtc tctggacaca 180 caagacaaac gccctaaagt gaacttttca cgagtgctct caactgagca gatgcgagta 240 gttactgaga actaccctga gttttcagtt tcctacacag gatctgcttt atctgtacat 300 tccctcgcag gagggttgag gtacttagaa ggggaatacc tgatgatgca agtgccgtat 360 ggttctccat gtcattacat cggagggaat tattcccaac acatgttgaa gggaagatct 420 tatgtccatt gctgcaaccc ctgtttagat ctgaaggacg ttgcacgcaa tgaaatgtac 480 aaggatgcga tcgaaaggta cgtcactaag aagagggacg gtccacgctc tgttgcgtgg 540 cgttcccaag ccgaatcgtc tcaggagacg aaatttgccg gactgccttc ctggcaaatg 600 gacgcattcc gaaggtacca ttcagaccct agttcggtta cttgtccaga tgtttttcag 660 cagtgtgaac acgaattctc gcgcggtgga gaccgttatg ctgtggctct ccactctatt 720 tacgatgttc catgcgagca gatagggcct gctcttctac ggaaaaacat caaggttctc 780 ttcgctgcct tccacttctc ggaagatctg ttaataggaa gcgagttcgg ccgtttacca 840 aacgtcggag ctttcttctc tgttgatggg gattctgtca acttccagtt cgaagatgaa 900 tctactttac attacacgca tagtttttcg aatattagga aaattgttac tagaactttc 960 tttcccgcat ccgatagagt agtttatgta aaagagttta tggttaaacg tgtagatacc 1020 tttttcttta ggatggttag agtagatacg catatgttac acaagtcagt aggtcagtat 1080 caggtcagca agaatgatta ctactctctc aaatcttcac ctgttttcca agacaaagcc 1140 acgttctctg tgtggtttcc gcaagcaaaa tccaaggtgg ttatcccgtt atttgaaatg 1200 cagggttttt tttctggcac tcttaaatca aaaaagatgc tagttgacgc gacatttatt 1260 catacggtga tcaatcatat ctgcacttat gacaacaaag cgttgacctg gcggaatgtc 1320 cagtctttcg ttgagtcatt cggtctaggt tgtatgaacg gagtttctgt ccgcagtgag 1380 tgggacgtac cgattgagat gctttgcgac atatctttta ccgtctttct tacggttaag 1440 gttaaagtac aaatcgaaat catgagcgaa aagatcgtaa cacagccaca ggggctttta 1500 ttacggctcg cccagaaagt ttctgacgcg ttcgagggat gcaccgcgac aatacatgcc 1560 gcattgatgt ccaccggatg gttcagatgc caagcggacg agttggtcgt agaggctcct 1620 gagctgttta tggactttca tgatttcctt tctgctgctt gggaggccga cgccaaaata 1680 gaggcggcta atgtcgagag cgtcctggac gcttctgatc gtctatacac tacggttaat 1740 gaactttgtg agcgctactc aggaatcgag tttgacttag agaaattcac ggatttctgc 1800 catcaccatg acgtcaaccc gagtttgatt ggtaccgtca tagaggcgat cttttcgcaa 1860 tccgcaggga tcacggttac aggtctgcaa gcaaagtcgc ttgaatgggc ggctgcggaa 1920 gccttagccc ctgtagatga cgacatggat tgttcatccg acgaagaaga tgccgcgcca 1980 cacgacctga aatttccggg attatctgct gaggagcaga gatatttgag agatgttaga 2040 gccaaggagg cctccttcat tgagttgcaa gacacgttca atcgcaaaag agttacggaa 2100 accgtcaccg taggtgtcgg tgccctgcct actttgccca aacaatggat tgcgaaggga 2160 aaggcccatc ttcctcaagt cggttattcg gtagggaaaa acaagtatta cgccgacttt 2220 aatgacgacg atatagtggc tgtgaggaag atccatctga tggagacctg caatttgaga 2280 ctcaagaaat ctattacgcc tgtgatttac accggcccca tccgcgttag acagatggcg 2340 aactatttgg actacttgtc tgctagccta acggctacga taggtaatct cgaacggatc 2400 gtcagttctt cgtggaccgg ggaaaacgag ttagttcaga cctatggtct gtttgactgc 2460 caggctgata aatggatttt gcaacccacg gaaagaactc actcttgggg tgtatgttta 2520 acgatggacg acaaattgag aatcgtgttg ttgcagtacg acgagtttga ctggccaata 2580 gttgacaagt cttcctggaa ggctttttgc gtttctgccg ataccaaagt cttttcaatt 2640 attaggagtt tagaagtact ttcctctctt cccctttctg atccgactgc aaaattcacg 2700 cttattgatg gtgttcctgg atgtggaaaa actcaagaaa ttataaactc tgctgacttc 2760 aagacagatt tgatccttac acctggtaag gaatccgccg cgatgataag gaggcgagcc 2820 aacgccaagt tcagaggttg cgttgcaact aatgacaatg tgcgaacctt tgattcgttc 2880 gtcatgaaca agaaaccctt caccttcaaa accctatggg ttgatgaagg gttgatggtt 2940 catacaggtc tgttgaattt ctgtgtcaat atcgctaagg tcaaagaggt taaaattttt 3000 ggggatacca aacaaatacc cttcatcaat agagtcatga atttcgatta cccgctggag 3060 ctgaagaaaa ttattgttga tgatgtcgag aagagataca ccagcaagcg gtgtcctcgc 3120 gacgtgacgc attacctcaa tgaggtttac gccgcgcccg tgacgacatc gagtgctgtt 3180 gtgcactctg tctcgcaaaa gaaaatcgcg ggcgtggggc tgttgcgacc tgaattaacc 3240 agccttgaag gcaagattat tacttttacc caaagtgata agcaaacctt gttaaaggcc 3300 ggttatgagg acgtcaacac agtccacgag gttcaaggag agacatacga gtgcacctct 3360 gtggtgcggg caactgcaac gcccataggc ttgatatccc ggaaatcgcc acacgttttg 3420 gtggcgcttt ctaggcatac caagactatg acgtattata ccgtcactgt cgatcctgtc 3480 agctgtataa ttgccgacct agaaaaggtc gatcagagca ttttgtcgat gtacgccact 3540 gtggcgtccc ccaaatagca attacagcag atgtcgttcc aaatcactga gaatatagtt 3600 ttgcccgtat caaaagcggg attttggacc gacatgcagt ccttctatga cgcttgccta 3660 cctggaaaca gttttgtgct caatgactac gactctgtga cgatgaggtt ggctgacaac 3720 gaattcaact tgcaaccttg caggttgact ttgtctaaag ccgatccggt cgccgagtca 3780 atcaaattgg aaaggaagaa tatcgataag cttgatctta agactgctac agagaggccg 3840 cgtattccgg gttttttaga gaatttggta gctatagtta agcgtaattt caacaccccg 3900 gacttagccg gggttttaga tatagatact attagtaaga gtgttgtaga taatttcttt 3960 accacttttc ttagggacga acagttgtct gatcatttag tgcgtgtcag gtcttgtagt 4020 ttagagagtt tttctgcatg gttccataat caggctacag ctgccatggg gcagttagcg 4080 aattttgact tttcagattt gccgccagtg gatatgtata cgcatatgat taaacggcag 4140 ccgaagtcga aattggatac tagtattcag tctgaatatc cggctttgca gaccatagtt 4200 tatcattcta agttagttaa tgccgttttt ggtcctgttt ttaggtatct tacgagtgaa 4260 tttctttcta tggtagataa ctctaagttt ttcttttata ctaggaaaac cccggaagat 4320 ttgcagtctt tcttttctac tttgtccgcg aaagagtcct acgaaattct ggaattggac 4380 gtctccaaat atgataaatc tcaaacggat tttcaccaag ccgtcgaaat gcttatatgg 4440 gaacgcttgg gtttggatga tgttcttgcg cgaatatggg aaatgggcca caagaagacc 4500 agtatctcgg actttcaagc cggaattaag actgtgatct actatcagag gaaatctggg 4560 gatgttacta cgtttatagg taatactttt attattgctg cgtgtgttgc ttctatgatt 4620 ccgttaagta ggtcttttaa agcctctttc tgtggtgatg actcactaat ctacatgccg 4680 cccggtttgg agtaccctga tattcaagct acagctaacc tcgtttggaa tttcgaggcc 4740 aagttgttca agaagaggta cgggtatttt tgtggaaagt atgtcattca ccactctaat 4800 ggctgtattg tgtatcctga ccctttaaag ctaatttcaa aattaggtaa taagagtcta 4860 gaaagttacg accatttaga ggaatttaga atttctctga tggacgtggc aaaacctttg 4920 tttaatgccg cttattttca ccttttagat gatgctatcc acgagtattt tcctagcgta 4980 gggggtagca gttttgctat taattctttg tgcaagtacc ttagtgataa gtggttgttc 5040 aggtctcttt ttgcgaagtc ttctgtctag atatgtctgt aagtagtgta ggtgtcaaga 5100 atgtcttaaa gcccaatgag tttgttaaac tctcatgggt ggataggatc cttcctgaca 5160 tgtttacagt ttatcgttat ctgtctgtta ctgactatag tgtgattaaa tccaaggatt 5220 ctgagtgttt aattcctgta gatttgttgc gtggagtcga cttgtccaag tctaagtatg 5280 taactttggt gggtgtggtc atctcgggag tctggacgat tcctgagaac tgcgctggcg 5340 gagctaccgt cgcgctggtc gacaccagga tgtcgatggt tgacgagggg actatctgta 5400 agttctctgt cgctgcttcg acgcgtgact ttatggttaa gttgatacct aactattacg 5460 tcctggcgtc ggatgcatcc tcgaagccct ggtctatttt tgttagagtt tctggagtcc 5520 gtataaagga aggtttctca ccgcttacgc tcgagatagc ttccttagtc gctactacta 5580 attctatact taagaaaggt cttcgtgtta gtgtcttaga gtccgttgtc gggtctgacg 5640 cttccatcaa tctcgatacc gtttcggata aggttcaacc ctttttcgat tcggtcccga 5700 ttacggcagc cgtcatcgct cgcgacaggt catacgtgtc taagtctggt cccagtcgtg 5760 ctgtacgaca aagaccccag ttcaagggtg gcaagaaagg ggatgcggat tccgctgaga 5820 gtatgtctga tggtggtgct tatgaaccac ctcgtttata acaagatgtc ttactcgatc 5880 agtagtttcc gttcgcttcc tgcttacact aagtcctttt atccttttat tgaattttat 5940 aatttgttgg tttcatctca gggaggggct cttcaaacgc aaaatggcaa agacatttcg 6000 cgcgagtctc tcaatgggtt gttaacctct gttgcgtctc ccaagtcacg ttttccagct 6060 ggtgaagctt tcgtgtggtc tcgtgagtcg cgcattgcag ctattctcga ttctttgtta 6120 tccgctttgg attctagaaa tagggctatc gaagttgaaa acccttctaa tccttctact 6180 ggagaagcat tgaacgcgac taagcgcaat gacgacgcgt ctacagccgc acacaacgac 6240 attcctctgc tattagcagc tttgaatgac ggtgtgggcg tttttgatac agcgtctttt 6300 gagtctgctt tcggtcttac atggaccgca agctcgtctt cctcaaattg aggcgtgggg 6360 gtaacgatat accccagagt ttttccctcc tcttaaatcg aagggcgttc cttacgcggt 6420 ttctaccgaa cctctatcgt gtgacgatat gttggcgtaa gtttgtatgg gtagaggtgt 6480 tcgaatcacc ccctttgtcc tgggtaagga cccca 6515 //