ID AB011007; SV 1; linear; genomic RNA; STD; VRL; 3591 BP. XX AC AB011007; XX DT 08-JAN-1999 (Rel. 58, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Patchouli mild mosaic virus genomic RNA, complete sequence of RNA2. XX KW . XX OS Patchouli mild mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Fabavirus. XX RN [1] RP 1-3591 RA Ikegami M.; RT ; RL Submitted (02-FEB-1998) to the INSDC. RL Masato Ikegami, Tokyo University of Agriculture, Nodai Research Institute; RL 1-1 Sakuragaoka-1, Setagaya-ku, Tokyo 156, Japan RL (E-mail:ikegami@nodai.ac.jp, Tel:03-5477-2537, Fax:03-5477-2634) XX RN [2] RA Ikegami M., Kawashima H., Natsuaki T., Sugimura N.; RT "Total nucleotide sequence of Patchouli mild mosaic fabavirus"; RL Unpublished. XX DR MD5; 42e80d34c79a0211c41ef7ceb039230e. XX FH Key Location/Qualifiers FH FT source 1..3591 FT /organism="Patchouli mild mosaic virus" FT /segment="2" FT /mol_type="genomic RNA" FT /db_xref="taxon:73149" FT CDS 221..3415 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q9Z006" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9Z006" FT /protein_id="BAA36400.1" FT /translation="MRPELVAVLDRYFTEVISCFFLGWLINFLLVWFNSARSAFLLWSV FT FLYVSYYILRIEFAYIVAPFLKTIYTNSSQYHIVDWENAYTALPKGLWEQITDYNYCFN FT FPSPSVEGFVSDFSPRFTLKELEIMNEANITPVHTIPKDTLLKRASDYKLAVESKKSIL FT PKVQDLYEMDKWHTLKSKLSKNAPSYVTTSEIVVGAMSGAGNTKLAIPIVEKYTEEVAD FT DRLPDRVRAKADQIMVAAIELVADGFASVNSDVTMAGALYDKRHKTIASSFKGAFASRA FT SGVPSHVIYFPMHRVPSSDDPNTTLELSMVSRDSDFDEGYTLANISARTLYVRAKGPEK FT VTETRHLLKAKTEDVVKARQFASEAQVVFATPRLFPEVNLDNYNLPGPSNVQQTEAITT FT DRGILCPKPKFKGNEVVLNYTGSAKVRGHGSQRFEKKDVAGEQFVRSVEDLGCLSDEDG FT KDYRYGQGLMEEDVLNVQTNNFAIESATETMRLLFSGYASIPLNVIPGTKITVAYLNEL FT SKHSAVHTGLLNMLSKIPGSLKVKINCQVAPTCGIGLAVSYVEGNESANLGSSLGRLLG FT IQHYKWNPAIEPYVEFCFQAFFLCRLVEHALFRVFQICSCGGHTDIVQVAERSEVDARI FT SFAIYYEPTITLPKQIATLEHAPAFMFRKELGTLAFKQGELVAYSFEVNFGKPQTDGKE FT VTSTFASAYCGLSQYIQSDVILDFTLMSSPMIGGTFSIAYVAGAYIEKVGNMQILDSLP FT HIDFTFSSGSKSTRSVRFPKEVFGVYQALDRWDLDSARGDDVSGNFVLYQRDAVSSALE FT GELTFRIAARLSGDITFTGVSAGYPTTITRIGKGKTIGRSLDPEIRKPLRYMLGQAHTT FT PKDFSSVRFVMGHWKYKAGLYPGSKSDEDIHPFSLKMRLDGSKSSENFEIIHSPFVRLL FT QNCAWMRGTLKFYIVARASSDYMSYRRTSQLTVSAHENSLSSNQFYSGVLMSPSGELSF FT SREVVGPVDGFASMGWNVRGSKKFYKIHVEMGNVHEYDSVVLYGQFGTDVEFAGQQKGG FT HYLLEKETPIFKTIKY" XX SQ Sequence 3591 BP; 1021 A; 657 C; 852 G; 1061 T; 0 other; taataataaa atattaaacc aaacagcttt cgttccgaga aaacagcttt cagttacaaa 60 acagctttca gttacataac agctttcaga tactttgaag tttcaaattg aacccggaaa 120 aagggagtgt gattcaaagc gcaccatata ttttgaaaac ttcatctttt agttttgtta 180 gtgcattatc attcaaaatt ttgattttga atatgttgta atgcgtcctg aacttgttgc 240 agtgttagat agatacttta cagaagtcat aagttgtttc ttcttgggtt ggttaataaa 300 ttttctactc gtttggttta attcagcaag aagtgctttc ttgttgtggt cagttttctt 360 atacgtttca tattacatat tgagaatcga atttgcatat atcgttgcgc ccttcttaaa 420 aacgatatac acaaatagtt ctcaatacca cattgtagat tgggagaacg catacacagc 480 tttacctaaa ggactgtggg agcaaattac tgattacaac tattgtttca acttcccatc 540 cccttctgtc gaaggttttg tgtctgattt ttcaccgcga tttacactca aagaacttga 600 gatcatgaat gaagcgaata ttactccggt acacacgatt ccaaaggaca cattgcttaa 660 gagagcaagt gattacaagc tggctgtgga gagcaagaag tccatcttac ctaaagtgca 720 agacttgtac gagatggaca aatggcacac tttgaagagc aagttgagta agaatgctcc 780 tagttacgtc acgacttcag aaatagtagt cggtgcgatg tcaggagcag gaaatacgaa 840 attagcaata ccgattgttg aaaagtacac cgaggaggtg gcagatgaca ggttgcctga 900 tagagttcgt gccaaagccg atcaaataat ggtcgcagcc attgagttgg tggcagatgg 960 ttttgcctca gtcaattcgg atgtgactat ggctggagca ctctatgata agcgtcacaa 1020 gaccattgcg agttctttca agggtgcttt tgcatctaga gctagcggtg ttccttcgca 1080 cgtcatttac tttcctatgc atagagttcc ttcgagtgat gatccaaaca caactctaga 1140 gctttcaatg gtgagccgag attcagattt tgatgaaggt tacacgctgg ccaatatctc 1200 agctcgcact ctttacgttc gcgcaaaggg acctgaaaag gttacagaaa caaggcatct 1260 tttgaaggcc aaaactgagg atgttgtgaa agcgcgccag tttgcaagtg aggcacaagt 1320 tgtatttgcc acgcctcggt tgtttcccga agtgaatttg gacaattaca atttgcctgg 1380 acctagcaat gtgcagcaga cggaggccat cactactgat agaggaatat tgtgcccgaa 1440 gccaaaattt aaaggaaatg aggtggtgct caattacaca ggttcggcta aggttagggg 1500 ccatggctca cagagatttg agaagaaaga cgttgctggt gagcaattcg ttagaagcgt 1560 tgaagatcta ggatgtttgt ctgatgaaga tggcaaggat tataggtatg gccaaggctt 1620 aatggaggaa gatgtgctga atgtgcagac gaacaatttt gctatagaat cagccacgga 1680 gaccatgcgc ttgttattta gtgggtacgc aagcattcct ttgaacgtta taccgggtac 1740 caaaatcacg gtggcctact tgaatgaatt gtctaaacat agtgcagtgc acactggtct 1800 gttgaatatg ttgagcaaaa ttccaggctc tttgaaggtt aagattaatt gccaggtggc 1860 cccaacatgt ggaattggat tggcagttag ttatgttgaa ggaaatgaaa gtgcgaattt 1920 gggatctagc ctgggacgct tgttaggcat tcagcactac aagtggaacc cagctataga 1980 accgtatgtg gaattttgtt ttcaagcctt tttcctgtgc agattggtgg aacatgcatt 2040 atttagggtc tttcaaatat gctcctgtgg tggtcataca gacattgtcc aagtggctga 2100 acgctccgaa gtggatgcca gaattagttt tgcaatatac tatgagccta ccatcacatt 2160 gcccaagcag atagctaccc tagagcatgc cccagcattt atgtttcgca aggagttagg 2220 gacactggct ttcaagcaag gggaactcgt ggcttactca tttgaagtca attttggcaa 2280 accacaaact gacggaaagg aagtgacttc aacttttgca tcggcttatt gcggccttag 2340 ccaatatata caatcagatg tcattttgga ttttaccctc atgagcagtc ctatgattgg 2400 aggaactttc tcgattgcat atgtcgcagg agcctacatt gaaaaggttg ggaacatgca 2460 aattctagat tccttgcctc acattgattt cacattctct tcaggatcta agagcacgcg 2520 ctctgtgcga tttcccaagg aagtctttgg ggtgtatcaa gcacttgata ggtgggattt 2580 ggattcggca agaggagatg acgtctcagg taattttgtg ctttatcaga gagatgcggt 2640 ttcgagtgcc ttggaaggag aacttacctt cagaatagct gcccgcttat ctggagacat 2700 cacctttaca ggcgtgagtg caggctaccc aacgacaatt acgcgcatag gaaaaggtaa 2760 aaccataggg aggtcactcg atcctgagat taggaagcct ctgaggtaca tgcttggtca 2820 agcacataca acacccaaag attttagctc agtgcgtttt gtgatgggtc actggaaata 2880 caaagcaggt ttatatcctg gaagcaagtc agatgaggat attcatcctt tttccttgaa 2940 aatgcgtctt gatggttcta agagcagtga gaactttgaa atcatacatt ctccttttgt 3000 gcgtctattg cagaattgcg cgtggatgag aggtactttg aaattctaca tcgtggctcg 3060 tgctagttct gattatatga gttacagaag gacatcgcag ttaactgttt cagcacacga 3120 gaacagtctc agctccaacc aattttatag cggagttttg atgagcccta gtggtgaatt 3180 gagcttttct agagaggtgg ttggcccggt ggatggtttt gcttccatgg gctggaatgt 3240 gcgtggtagc aagaagtttt ataaaattca tgtggagatg gggaatgttc atgagtacga 3300 ttctgtagtg ttgtatggac aatttggcac tgatgtcgaa tttgctggcc aacaaaaggg 3360 tggacattat ttattggaaa aagaaactcc tattttcaaa acaatcaagt attaataacg 3420 tgagaagtta tttggtgttt gaatttgaat aaaaaggcgt aggtcactag cctcccatta 3480 aaatgggttc catgaccttt gtgagatgtg taatatttac tactcttaaa acacatgtgt 3540 attgtgttag gttaaagcat cctttatatg tataagcttt agtagtattt t 3591 //