ID AB010303; SV 1; linear; genomic RNA; STD; VRL; 4497 BP. XX AC AB010303; D11160; XX DT 30-JAN-1998 (Rel. 54, Created) DT 29-DEC-2008 (Rel. 98, Last updated, Version 6) XX DE Garlic virus D genomic RNA, 3' portion, partial sequence. XX KW . XX OS Garlic virus D OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-4497 RA Sumi S.; RT ; RL Submitted (10-JAN-1998) to the INSDC. RL Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for RL Biotechnology Research; Shimokotachi, 1624, Takata-Gun, Koda-Cho, Hiroshima RL 739-1105, Japan XX RN [2] RX PUBMED; 8376963. RA Sumi S., Tsuneyoshi T., Furutani H.; RT "Novel rod-shaped viruses isolated from garlic, Allium sativum, possessing RT a unique genome organization"; RL J. Gen. Virol. 74:1879-1885(1993). XX RN [3] RX DOI; 10.1007/s007050050706. RX PUBMED; 10542028. RA Sumi S., Matsumi T., Tsuneyoshi T.; RT "Complete nucleotide sequences of garlic viruses A and C, members of the RT newly ratified genus Allexivirus"; RL Arch. Virol. 144(9):1819-1826(1999). XX DR MD5; 8e28f67085a271b7893637357f116ab7. XX FH Key Location/Qualifiers FH FT source 1..4497 FT /organism="Garlic virus D" FT /host="Allium sativum" FT /mol_type="genomic RNA" FT /db_xref="taxon:12430" FT CDS <1..859 FT /codon_start=2 FT /product="RNA dependent RNA polymerase" FT /note="ORF-I" FT /db_xref="GOA:Q9Z015" FT /db_xref="InterPro:IPR001788" FT /db_xref="UniProtKB/TrEMBL:Q9Z015" FT /protein_id="BAA74944.1" FT /translation="SQDAAFLNFELRKARHFGIPPEIVDFYAFIKTHAKTFLGNLAIMR FT LSGEGPTFDANTECNIAYDALRFQVDPTVNACYAGDDLVRDKACEERPGWKYAEPLFSL FT KAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRL FT GDQLYDVFDENEMEKHQLVTRTLIKKGMQPPSSGDHLPVFHVTSDRLIRDPSAKRVSTY FT EYDSVSLPFELIDDHFAHNSSRPDREDMNNARDTQTQDHTSPAGSPEGREPLLSDLFPQ FT LISL" FT CDS 957..1670 FT /codon_start=1 FT /product="26kDa protein" FT /note="ORF-II" FT /db_xref="GOA:Q9Z014" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9Z014" FT /protein_id="BAA74945.1" FT /translation="MKTDLLLQIVTNHGFERTEIPIREPIVIHGVPGSGKSTLVKALLK FT FQSTVACTLGAPYGRTLASPGITTPEPTSALTDYETRILDEYQLGDESIAVPFNILIGD FT PFQGHLHYRAHFVKRVSHRVPKSVCDFLTTLDYDITGTSDGDVVQLPVYSSAPGPPLGQ FT VLHLGLASRQLTKSHNVCSRAPSEVQGLEFDEVTLVYHSTEFQKDRVGFYIAATRAVNR FT LNLVTDTHLPQITNR" FT CDS 1684..1995 FT /codon_start=1 FT /product="11kDa protein" FT /note="ORF-III" FT /db_xref="GOA:Q9Z013" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q9Z013" FT /protein_id="BAA74946.1" FT /translation="MSFAPPPDYSKVYITLAGGLATGILIYTLRSNHLPHVGDNTHNLP FT HGGRYCDGNKQIHYYKPNSGGQHGGSFVPLFFVFLLSLAILLLSCPRRRLCVRCSEPH" FT CDS 2106..3200 FT /codon_start=1 FT /transl_table=1 FT /product="40kDa protein" FT /note="ORF-IV" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:O55605" FT /protein_id="BAA61824.1" FT /translation="MVIVTTFHIDRARELIITNTNSCRDTVLNQLQALGVELQTTTARL FT DNFYSATTTSWQLIRDRLCDTSSSSNANLDTAPAEARSEPPNAHITNLQRTFFSNANIA FT LDATRTLLGYVPPARYDVPPVTLPLDELFGQLHALHQNSLEWLTHINHNVDSILDMLNP FT SNLLSQGTPLNRLREMLVALTGKVDDIYATIQSSRLETNQPSSSKPVNRFETIEHSLES FT LHIKLDELTSAVAHALDHPHVTPVPDEMRPSASTRDLPAYQAQHPTRPCRAYGTVLFED FT KILRIPMDITGRPVSTALKLELHLTTNDQTTMVSYRIYDDGYLLLSDDVETAHKLQHRL FT SDCLALLHQRCPNFIYKIKGHGLC" FT CDS 3249..4001 FT /codon_start=1 FT /transl_table=1 FT /product="viral coat protein" FT /note="ORF-V (CP)" FT /db_xref="GOA:Q67701" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q67701" FT /protein_id="BAA61825.1" FT /translation="MNEQGNTSTQSPRGTVNPPGPPQPNVSAFGQGQTRPSGSRDPPNA FT NPITNEQDELMPAVTEFENLANDVESNSLASRATIRDILDMLQATRQGATPKDLFSLAW FT TCYHNGSSRFVTLSTKAPCGMPLSELKDLVENFCTLRQFCGFYAKACYVTGKQQKKPPA FT SWSRKGYQDDAKFAGFDFFNAVLSDFSPAPPGGMRFKPTDAEILAHSMNAKMSIVESRR FT SSNMVSTRADLLAQQQIHEQPKPPMITF" FT CDS 4001..4387 FT /codon_start=1 FT /transl_table=1 FT /product="nucleic acid binding protein" FT /note="ORF-VI (NABP)" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q67702" FT /protein_id="BAA24568.1" FT /translation="MHPHDFNLLCCLHFSQPPLPKDLKEFIFSRCVDCCKLVRRTNQNK FT PFQGVSKCAKRRRAKRYNRCFDCGAFLVDGHRCKVFVSKAHSDVLAVIHEGPAKLYAER FT SYRPNSDAAQLIENDILYIRALKL" XX SQ Sequence 4497 BP; 1264 A; 1228 C; 941 G; 1064 T; 0 other; atcgcaagat gcagcctttt taaactttga gttgaggaaa gctaggcatt ttggaattcc 60 acctgaaatt gttgacttct acgccttcat caaaacacat gccaaaacct tcctggggaa 120 cctagctata atgagattga gtggcgaggg gcccacattc gatgccaaca cagagtgtaa 180 tatagcctat gacgccctca gattccaagt agaccccaca gtaaacgcct gctacgcggg 240 agacgactta gtaagagaca aagcctgtga agagcgacca gggtggaagt atgcggaacc 300 tttattttca ctgaaggcaa aacccttggt aaccaacaag cccgattttt gcggttggcg 360 actcaccaag tatggcattg tcaagtcccc cgtgcagtta taccaatcct tgcaacttgc 420 gttgagactg gggaaagtgg aggaagttaa gcggagctac gccatcgact atctgtttgc 480 ataccggtta ggtgaccagt tatacgacgt gtttgatgag aatgaaatgg aaaaacacca 540 gctagtcacc aggaccctga taaagaaagg aatgcagcca ccaagttctg gtgaccactt 600 gccggtgttc catgtgacgt ctgataggct gatccgcgac cccagcgcta agagagtgtc 660 gacgtatgag tacgacagcg tcagtctacc gtttgaacta atcgatgacc acttcgcaca 720 caattcaagt cgaccggata gggaagacat gaacaatgca agagatactc aaactcaaga 780 ccacaccagt ccagccggct ctcctgaagg tagagaaccg ctgctcagtg acctcttccc 840 gcaactcatc tccctgtaaa catgtagtcg catctaacta attactcaca ttaagataga 900 tagactaact actgagcaat ccagcgcctg acagttatgt tctagattag tttgaaatga 960 agactgacct gctactacag atagtaacta accacggatt tgagcgcacc gaaataccta 1020 ttagggagcc tatcgttatc cacggagtac ctggttctgg caaatccacc ctagttaaag 1080 cattgttgaa gttccaatcc accgttgcat gcacgcttgg ggcaccatac ggtcgtacgc 1140 tcgcctcgcc cggaatcaca acgcctgagc ccacctctgc cttgacagac tacgaaaccc 1200 ggatccttga cgagtatcag ctgggcgacg aatctattgc agtgcccttc aacattttaa 1260 tcggggaccc tttccaaggc catctgcact atagagccca cttcgttaag cgcgtctcgc 1320 acagagtacc caaatctgtt tgtgacttcc taactacact tgactacgac atcactggga 1380 cttcagacgg tgacgttgtg caacttccag tttacagcag cgccccgggt ccacccttag 1440 gccaagttct ccacctgggg ctagcttccc gccaactgac caagagccac aacgtgtgtt 1500 cacgagctcc ctcagaagtt cagggtttag aattcgacga agttactctg gtttaccact 1560 ccactgaatt ccaaaaagat cgcgttgggt tctacattgc cgccacccga gctgtcaacc 1620 gcctcaacct tgtaacggac actcacctgc cccagataac caaccgctga cgactacagg 1680 tagatgagtt ttgcccctcc cccagactac tctaaggtat acatcacact tgcaggaggc 1740 ctcgctaccg gcatattgat ttacactctc aggtccaacc acttaccgca cgtcggagac 1800 aacacacaca atttaccaca cggtgggcgt tattgtgacg ggaacaagca aatccattac 1860 tacaaaccca attctggcgg ccaacacgga ggatcgttcg ttcctttgtt cttcgtattt 1920 ctcctctctt tggctatact actgcttagc tgtcctcgcc gccgcctttg cgtacgctgc 1980 tctgaacctc attaacggac cacaacacgg ctgcataatc acagtcacgg gcgcatcagt 2040 gcaagtgtct aattgtcctc ttgagcacgt gtccaccatc gttgaatctt ttagctggag 2100 cagacatggt gattgtaacc actttccaca tagaccgtgc acgtgaacta atcattacaa 2160 atacaaatag ctgcagagac actgtgctca atcagctaca ggctttagga gtggaattgc 2220 agactactac cgccagattg gacaactttt attcagcgac caccaccagc tggcagctca 2280 ttcgcgaccg tctgtgcgac accagctcga gctctaacgc gaatcttgac acagcacctg 2340 cagaggcaag gtctgagcca cccaacgctc acatcacaaa tctccaacgc actttcttct 2400 caaatgcaaa cattgctttg gatgctaccc gcacactgtt gggttacgtc cctcctgcta 2460 gatacgatgt gccgcctgtt acgctacctc tggatgaatt atttggacaa cttcacgccc 2520 tacaccaaaa ctccttagag tggctcacac atatcaatca caatgtggat tcaatcttag 2580 atatgctaaa cccgagcaac ctgttatcac aaggtacgcc attaaatcgg ttgcgtgaaa 2640 tgctagttgc tttaactgga aaggtcgacg acatatacgc aacaattcaa tcatcaaggc 2700 ttgaaaccaa ccaaccaagc tcttcaaaac cagtcaacag attcgaaacc attgagcata 2760 gtctagagag tttacacatc aaacttgatg agctcacttc cgcagtggca catgcgctcg 2820 accatcctca cgtcacacca gtaccagatg agatgcgacc atccgccagc acgcgtgacc 2880 tcccagccta ccaagctcaa cacccaacgc gaccatgtag agcctacggt actgtacttt 2940 tcgaagacaa gattttgaga atacccatgg acatcactgg aagaccagtg tctaccgctt 3000 tgaaacttga gcttcacctc accactaatg accagactac gatggtgtcg tacagaatct 3060 acgatgatgg ctacctttta ctatctgacg acgttgagac ggcacacaaa ctgcaacatc 3120 gcttgagtga ctgcctcgcg ttactgcatc aaagatgccc caactttatc tacaagataa 3180 aggggcatgg tttgtgttaa gtttgtttga aggttgaatc aagcaagtga agagtgtaag 3240 ttgcaagaat gaatgaacaa ggaaacacga gcacccaatc accacgaggt acagttaacc 3300 cgcctggacc accccagcct aacgtatcag ctttcggcca aggtcaaact aggccctctg 3360 gcagccgtga cccgccaaat gctaacccaa ttaccaatga acaggatgaa ctaatgcccg 3420 ccgtaaccga attcgaaaat ctggctaacg acgtcgagtc aaactcacta gcttcaagag 3480 cgactataag agatatcctg gatatgctac aagcaaccag gcaaggagct acaccgaagg 3540 acctcttttc cttagcttgg acgtgctacc acaatggctc ctcacgcttc gttacactaa 3600 gcacgaaagc accttgcgga atgcctctct cggaactcaa agacttggtc gagaatttct 3660 gcacattgag acaattctgc gggttttatg ccaaagcctg ttacgtcacg ggcaagcaac 3720 agaagaaacc accagccagt tggtccagaa aaggctacca agatgacgca aaatttgccg 3780 gatttgactt ctttaatgcg gtgcttagcg acttttcccc tgccccacct ggaggaatga 3840 gattcaaacc cactgacgcc gaaattcttg ctcactccat gaacgctaag atgtcaattg 3900 tggaatcccg ccggtccagc aacatggttt ctacccgcgc tgacctcctt gcacaacaac 3960 agatacatga gcagcctaag cctccaatga tcacattcta atgcatccac acgactttaa 4020 cttgctttgt tgcctacatt tttctcaacc tcctcttcca aaagacctca aagaattcat 4080 cttctcacgc tgtgtagatt gttgtaaatt agtacgtaga actaatcaga acaaaccttt 4140 ccaaggtgta tctaagtgtg ctaagcgtcg acgggcaaag cgctacaaca gatgctttga 4200 ctgcggagct ttcttagtag atgggcatag atgtaaagta tttgtatcaa aagctcactc 4260 agatgtgtta gctgtcatac acgagggacc cgctaagcta tatgctgaaa ggtcctatag 4320 gccaaactct gatgcagcac aattgattga gaatgacata ctatatatta gagctcttaa 4380 attataaggc ttgacccaag cctcccatca aatttacagg gttctggacg tgaacaaaga 4440 cactcacgac tgttgatatt gctaaactta ccttgcaaca acttatgtcc acgcgac 4497 //