ID AB010301; SV 1; linear; genomic RNA; STD; VRL; 5077 BP. XX AC AB010301; D11158; XX DT 30-JAN-1998 (Rel. 54, Created) DT 29-DEC-2008 (Rel. 98, Last updated, Version 7) XX DE Garlic virus B genomic RNA, 3' portion, partial sequence. XX KW . XX OS Garlic virus B OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-5077 RA Sumi S.; RT ; RL Submitted (10-JAN-1998) to the INSDC. RL Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for RL Biotechnology Research; Shimokotachi, 1624, Takata-Gun, Koda-Cho, Hiroshima RL 739-1105, Japan XX RN [2] RX PUBMED; 8376963. RA Sumi S., Tsuneyoshi T., Furutani H.; RT "Novel rod-shaped viruses isolated from garlic, Allium sativum, possessing RT a unique genome organization"; RL J. Gen. Virol. 74:1879-1885(1993). XX RN [3] RX DOI; 10.1007/s007050050706. RX PUBMED; 10542028. RA Sumi S., Matsumi T., Tsuneyoshi T.; RT "Complete nucleotide sequences of garlic viruses A and C, members of the RT newly ratified genus Allexivirus"; RL Arch. Virol. 144(9):1819-1826(1999). XX DR MD5; da65d27d552bbd2470fbeed4124801f9. DR EuropePMC; PMC3550721; 23637504. XX FH Key Location/Qualifiers FH FT source 1..5077 FT /organism="Garlic virus B" FT /host="Allium sativum" FT /mol_type="genomic RNA" FT /db_xref="taxon:12432" FT CDS <1..1427 FT /codon_start=3 FT /transl_table=1 FT /product="replicase" FT /note="ORF-I" FT /db_xref="GOA:O55599" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:O55599" FT /protein_id="BAA61812.1" FT /translation="LFPHQQAKDEALFKITINERIRLAAPETNRKALKDTINAGDLLFE FT AYASFMNVPRETQPFDKRLWAHCRQLALRTYLSKPTSNLQQGAQRQDPDFPDNGIALFN FT KSQWVKKLEKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFVMCEKTP FT EQFNSFVLTKWDFSRPNYTSDYTQYDQSQDSAFLNFELRKARHFGLPDEVVDFYAFVKT FT HAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDPSVNACYAGDDLVRDKACDE FT RPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVK FT RSYAIDYLFAYRLGDQLYDIFDEEELAKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDR FT LIQDPRATKVSTFESDRVILPLEFIDDHFAFASKSDRNDMTTASNQQTSESNVPANQTD FT YGGTLLTDMFPDIARL" FT CDS 1525..2256 FT /codon_start=1 FT /transl_table=1 FT /product="27kDa protein" FT /note="ORF-II" FT /db_xref="GOA:O55600" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O55600" FT /protein_id="BAA61813.1" FT /translation="MFPNVFEMKTSLLIQLLTNCGFQRTTVPLEEPIVIHGVPGCGKST FT LIKTLITHQSVVAYTLGIPYGKTLAHPGIQRPTNICDNQEAETRILDEYQLGLKVDLEP FT FNVLVGDPFQGRSTYRAHFVKTFSHRVPRPVCEFLNSLGYDIQGDKEGSLKVLPVFQHN FT SEGPKVVVIHLGPISCQLTQTYRVPSKTTSEVQGLEFKEVTLVFHSSELPENSETFFIA FT TTRASECLNIITDQLPSRLSI" FT CDS 2290..2616 FT /codon_start=1 FT /transl_table=1 FT /product="11kDa protein" FT /note="ORF-III" FT /db_xref="GOA:Q67695" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q67695" FT /protein_id="BAA61814.1" FT /translation="MSFTPPPDNSKSVLAIAVGAAVGLIIFTIRTNHSASVGDNTHRLP FT YGGQYRDGNKLVNYNGPNTGASAPSIFWPALSAIILTLVIHLRSGTRRRICIHCSESTS FT AHQS" FT CDS 2712..3785 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:3702..3704,aa:His) FT /product="40kDa protein" FT /note="ORF-IV" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:Q67696" FT /protein_id="BAA61815.1" FT /translation="MTYATVWQLFEVRDHIINHINTFKNQLAGALQNAQATLIESNHLT FT LDNKLKPIKEILDTFTSTVPTKASESTSQTQDQISLREAADREQTPTDRTFFTNLNAAL FT TATGNLLTHVPPARYNLPATSLPLDELYGLLHALHKNSLEWLTHLSHDADQIINKLNTV FT ENGVLNEARSDSRRLDLILQRISEVESKINDQATPTLDHHLLKTLTSIETRLQELHAKL FT IATPTDNPAGPSSSMTKPSGADTHSDHSVLPIFEAKHPTARCRSYGHVEFNGLSLHIPM FT DVQGRRPSTALRLITKHTLSSDATTVKYELLDDGALLLTEEIKPLYKLNHPLSDSLALL FT HSKCPNFIYKIRDDGLC" FT CDS 3830..4564 FT /codon_start=1 FT /transl_table=1 FT /product="viral coat protein" FT /note="ORF-V (CP)" FT /db_xref="GOA:Q67697" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q67697" FT /protein_id="BAA61816.1" FT /translation="MGDRSQGTNPIQGLNAQAQGDGSSGQSQRNPNRNPPPRPQADLNA FT QDNIMPSENDLAAIAGEVTSNSVATKETVKEILSDLQARRTNATPKDLFSLAWACYHNG FT SSKFTTLTTDGPCGIPHAELKDLVEDYCTLRQFCGYYAKTCYVMGKQQNKPPSNWSRKG FT FQEESKFSAFDFFNAVLNDSSPAPPGGMRFKPTQDEILGHSMNAKMSIIESRKASNMVS FT TRADLLAQQQIHEAPKPLMLTF" FT CDS 4582..4965 FT /codon_start=1 FT /transl_table=1 FT /product="15kDa protein" FT /note="ORF-VI (NABP)" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q67698" FT /protein_id="BAA24559.1" FT /translation="MHTYDFNFLACLQFAQPNLPSDVRISIYMLSSASRKIGRKSQQNK FT PFTGTSKCAARRRAKRYNRCFDCGALLNTDHVCKLFTSRASTDCLHVIREGPAKLYAER FT TFRKSSFAEQLILDDLELMKLYE" XX SQ Sequence 5077 BP; 1461 A; 1363 C; 1035 G; 1217 T; 1 other; aattattccc acaccagcag gcgaaggatg aggcgctgtt caaaatcaca ataaatgagc 60 gtattaggct agctgcaccg gaaacaaatc gtaaagctct caaagacaca atcaacgcag 120 gcgatttgct gttcgaagct tacgcgagct tcatgaatgt gcctcgtgaa actcagcctt 180 ttgataagag attgtgggca cactgcagac aactggcttt gcgcacgtat ctatcaaaac 240 cgacttcaaa tcttcagcaa ggggcacaac gtcaagaccc tgattttcct gacaacggca 300 tagcgctgtt taacaaatcg caatgggtta agaagcttga gaaagtggga tgcagattta 360 aggctggaca aaccatatcc gccttcaaac aatcaaccgt tctgctcacc accaccatgg 420 ctctctacct gcgtaaaaag agggagggac accaacccga caacgttttt gtgatgtgcg 480 aaaagacacc tgaacagttt aattcatttg tgctcaccaa gtgggacttc tctcggccca 540 actacacgtc tgattacact cagtatgacc agtcgcaaga ttctgcattc ctcaacttcg 600 agctgaggaa agcccgacat tttggactgc cagacgaggt agttgacttt tacgcttttg 660 ttaaaacgca tgccaaaacg ttccttggaa acctggctgt tatgaggctg agtggcgagg 720 gaccaacatt tgatgccaac accgaatgca acatagctta cgacgccctc agatttcaac 780 ttgatccatc ggtgaacgct tgttacgcag gggatgactt agtgcgtgac aaggcttgtg 840 acgaacgacc tgggtggaag tattctgagc cgctcttctc cctgaaggcc aagccactag 900 ttacgaataa acccgacttc tgcgggtgga ggctaaccaa gtatggaatc gtcaaatctc 960 cggtgcagct atatcagtca ctgcaactcg cccttcgtct tggcaaggta gaagaagtta 1020 agcgaagtta cgcaatcgac tatctcttcg cctataggtt aggtgaccaa ttatacgaca 1080 tatttgacga agaggagctg gctaagcatc agcttgtgac ccgaactctc atcaagaagg 1140 gtatgcaacc acccagttca ggagaacact tgcccacgtt ccacgtgaca tccgataggc 1200 tcatccagga cccccgggca accaaggtat ccacgttcga gtcagacaga gttattctac 1260 cccttgagtt catcgacgat cactttgcat tcgccagcaa atcggaccgt aatgacatga 1320 ccactgcaag caaccaacaa acttctgaat caaatgttcc cgcaaatcaa acggactatg 1380 gaggcacact tctaaccgac atgttccctg acatcgcccg gctttaacta acacttagtg 1440 atttagattg acaatagcat agtttagtac tacttctgtt cagacttact ccactcaatc 1500 actcaacgtc tatgtggcgt agttatgttt cctaatgtgt ttgaaatgaa aacctctctg 1560 ctcatacaac tactcacgaa ctgcgggttc caacgcacca cagtaccatt ggaagagcct 1620 attgttattc acggcgtgcc aggctgcgga aaatctacac tcattaagac gttgatcaca 1680 caccaatccg ttgtagccta cacccttggg ataccatacg gtaaaacgct tgcccaccca 1740 ggtattcaac ggcccactaa catttgtgac aatcaagagg ctgaaacccg aattctagac 1800 gaataccagc ttggcctgaa ggttgacctt gaaccattca acgttcttgt aggcgaccca 1860 ttccaaggtc gttccacata ccgcgcacat tttgttaaga ccttttctca ccgggtcccg 1920 cgtccagttt gtgagttctt aaattcactt ggctacgaca ttcaagggga caaggaaggt 1980 agtctcaagg ttttacctgt tttccaacac aatagtgagg gaccgaaggt ggtagttatc 2040 catctcggac ctatttcctg ccagcttaca caaacgtata gggttccatc aaagacaaca 2100 tccgaggtgc aaggtctaga gtttaaagaa gttacactcg ttttccattc cagcgaactg 2160 cccgagaact ctgaaacatt cttcatagcg actacgcgag caagcgagtg cctcaacatc 2220 atcaccgacc aacttccgtc acgactaagt atttaacgta cttaaaccac ctctgttctt 2280 caccaactaa tgagcttcac tcccccccca gacaatagta aatcagtcct tgcaatagct 2340 gtaggtgcgg ctgttggcct tataatattt actattagaa ccaatcattc tgcatcagtg 2400 ggagataata cacatcgctt accttacgga ggacagtacc gcgacgggaa caaacttgtg 2460 aactacaacg gaccaaacac tggagcgtcc gcacccagca tcttctggcc agcactcagt 2520 gcaatcatac tcactcttgt catacatctc cgtagcggta ctcgccgccg catttgtata 2580 cattgctctg agtctacttc agcccaccag tcctaactgc atcctgacca taacaggctc 2640 gactgtgcaa gtgtcaaatt gtccgttaga gcagatccct gatatagtta aatcatttgc 2700 ctggagtgct catgacatac gctacagtct ggcaactgtt tgaggtgcgg gatcacatca 2760 ttaaccacat taacacattc aagaaccagc tcgccggggc acttcaaaat gcgcaagcca 2820 cactcataga gtcgaaccac ctgactttag ataataaact caagcctatt aaagaaattc 2880 ttgacacctt cacatcaacc gtcccaacca aggccagtga aagcacctcg cagactcaag 2940 accaaatttc cctgcgtgag gctgctgacc gtgagcaaac tcccaccgac agaacattct 3000 tcacaaactt gaatgcggcg ctcactgcta ccggaaactt gctaacccac gtgcccccag 3060 ctaggtacaa cttgcctgct acctctctcc ccttagatga gctgtacggg ttgttacacg 3120 cattgcacaa gaatagctta gaatggttaa ctcatcttag ccatgatgct gaccagatca 3180 ttaacaaact gaacaccgtc gagaacggcg tactcaatga agctcgcagc gactccagga 3240 gactggactt gatcttgcag aggatttctg aagtcgaatc aaaaatcaac gaccaagcta 3300 cacccaccct tgaccaccac ctgttgaaaa cgttgacttc catcgagaca agacttcaag 3360 agttacacgc taagcttatt gccaccccta ccgacaaccc ggccggaccg agcagtagta 3420 tgactaaacc cagtggagct gacacacatt cagatcactc agttctccca atctttgaag 3480 cgaaacaccc cactgcgcga tgccgctctt atggacacgt ggagtttaat ggccttagtt 3540 tgcacatacc catggacgtt caaggcagac ggccaagcac tgctttacgc ctaatcacta 3600 aacacacttt atcctctgat gctaccacag tcaaatatga acttctagat gacggggcct 3660 tattgctcac tgaggagatt aaaccgctct acaaactcaa tcanccactt agcgattcac 3720 tagcactcct acactccaaa tgtcccaact tcatttacaa aattagggac gatggtttgt 3780 gttaagtttg gacttgggtt gaattaattt acactggctt agaaacacaa tgggagacag 3840 gtcacaagga acaaatccga tccaaggact caatgctcaa gcgcagggag acgggtcaag 3900 cggtcagagc caacgcaatc caaacagaaa cccaccgcct agacctcaag ctgacttgaa 3960 tgctcaggac aacatcatgc ccagtgaaaa tgaccttgcc gcaatcgccg gcgaagtaac 4020 gtccaattct gttgctacca aagagacggt gaaagaaatt ctcagcgatc tccaagcaag 4080 gaggactaac gctacaccta aagatttatt ttcacttgct tgggcttgct accacaatgg 4140 atcatcaaaa ttcacgactt tgaccacgga cggcccttgc ggcatacctc atgccgaact 4200 caaagactta gtcgaggatt attgtacgct aagacagttt tgtggatact acgccaagac 4260 atgctacgtg atgggcaaac agcagaataa gcccccttca aactggtcgc gtaaagggtt 4320 ccaggaagaa tcaaaatttt ctgcttttga tttcttcaat gctgtgctta acgactcctc 4380 ccccgccccg cccggtggca tgcgtttcaa accaacacaa gatgagattt taggtcattc 4440 catgaacgcc aaaatgtcca taattgaatc ccgcaaggca tcaaacatgg tctccactcg 4500 cgcagacttg ctagctcaac aacagattca tgaagcgccc aaaccactca tgcttacatt 4560 ttagaaattc ttgacccaga aatgcatacc tacgatttca acttcttagc ctgtttacaa 4620 tttgctcaac ccaacctccc aagcgatgtt agaattagta tatatatgtt atcctctgct 4680 agtaggaaaa taggtcgtaa atcccaacag aataaaccct tcactgggac gtcgaaatgt 4740 gcagcccgcc gtagagcaaa acgctataac cggtgttttg attgcggtgc cttgctgaac 4800 actgaccacg tatgtaaatt attcacaagt cgagccagta cagactgctt acacgtcatt 4860 cgtgaaggac ccgctaagct atatgctgaa aggaccttcc gtaaatcctc tttcgctgag 4920 cagcttatac tggacgactt agaacttatg aaattgtatg aataaacagg ctctgcccga 4980 gcctcccact gggtttacag ggctctggac atggacaaag acacccatgc tgttgatatc 5040 actaaactta ccttgtgaca acatttgtcc acgcgac 5077 //