ID   AB005612; SV 1; linear; genomic RNA; STD; VRL; 1681 BP.
XX
AC   AB005612;
XX
DT   11-FEB-1998 (Rel. 54, Created)
DT   18-JAN-2009 (Rel. 99, Last updated, Version 6)
XX
DE   Leek yellow stripe virus CP gene for polyprotein (viral coat protein),
DE   partial cds, clone: Lind3.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1681
RA   Sumi S.;
RT   ;
RL   Submitted (08-JUL-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050271.
RX   PUBMED; 9505969.
RA   Tsuneyoshi T., Matsumi T., Natsuaki K.T., Sumi S.;
RT   "Nucleotide sequence analysis of virus isolates indicates the presence of
RT   three potyvirus species in Allium plants";
RL   Arch. Virol. 143(1):97-113(1998).
XX
DR   MD5; 9d54fa9a0c2288cb116835372188610d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1681
FT                   /organism="Leek yellow stripe virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="leek"
FT                   /clone="Lind3"
FT                   /note="synonym: leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1087
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /note="C-terminal region"
FT                   /db_xref="GOA:O55523"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:O55523"
FT                   /protein_id="BAA24798.1"
FT                   /translation="YPELLDRIRKFYCWVLEQAPYSELSALGKAPFISEAALRNLYTDC
FT                   EATEAELSRYLELYDSNTPVEDTFVFQAGDELDAGMQTNKKQKDNTDKSIEQRNPTAPR
FT                   SSTQSEKDSGGGSELSGTKDRDVNVGTTGTFSVPRIKQIPQKGISIPMDGGKSILNLDH
FT                   LLQYKPSQLNISNTRATAAQLRTWIERVQEDYGVTKDDMGVILNGLMVWCIENGTSPNI
FT                   NGNWTMMDGDEQVVYPLRPIVEHAKPTLRQIMAHFSALAEAYIEMRNSEQAYMPRYGLQ
FT                   RNLTDMGLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRPRLFGLDGNVTTTDEDT
FT                   ERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     218..1084
FT                   /gene="CP"
FT                   /product="viral coat protein"
XX
SQ   Sequence 1681 BP; 531 A; 338 C; 399 G; 413 T; 0 other;
     atatccagag ctattggatc gtattcgaaa gttctattgc tgggttcttg aacaagcacc        60
     gtatagtgaa ttgagcgctt taggcaaagc gccattcatc tctgaagcag ccctacgaaa       120
     cttgtacaca gactgtgagg caacagaggc agagttatca cggtatcttg agctttatga       180
     tagtaataca cctgtagaag acacatttgt gtttcaggct ggagatgaat tagacgcggg       240
     tatgcaaact aacaagaaac agaaggacaa cacagataag tccattgaac agcgaaaccc       300
     aacagcacca cgatctagca cacagagtga aaaagacagt ggaggcggtt cagaattgag       360
     tggaactaaa gatagggatg ttaatgtcgg caccacagga actttcagtg tgccgcgaat       420
     taaacaaata ccacaaaaag gtatatcaat cccaatggat ggaggcaagt caatactcaa       480
     tttggatcat ttactgcagt ataaaccaag tcaattgaat atatcaaaca caagagctac       540
     agcagcgcaa ctaaggactt ggatagaaag agtgcaagag gattatggcg ttaccaaaga       600
     tgatatggga gttatcctga atggcctaat ggtgtggtgc atcgagaacg ggacatcgcc       660
     aaacataaac ggaaattgga caatgatgga tggcgacgaa caagttgtat atcctttacg       720
     accaatagta gaacatgcga aaccaacctt acgtcaaata atggcgcact tttcagcact       780
     tgcagaggct tatattgaga tgagaaactc agagcaggct tatatgccaa ggtatggttt       840
     acaaagaaac ttaacagata tgggtctcgc acggtacgct tttgactttt atgaagtcac       900
     atcaagaaca ccagttagag cgcgcgaggc tcacgcacaa atgaaagcag cggccttgcg       960
     aaattcaaga ccaaggctgt ttggactaga cggcaacgtc acaaccacgg atgaggacac      1020
     ggagaggcac acagcacatg acgtgaatgc acggatgcac catcttgatg gtgcgcatat      1080
     gcagtgatgt ttcggttagc aaccggttat ggacttccac gtaaaaagtc ccgagcgcca      1140
     agcttgtatt ttggctagtg tagtgaagct atgattcact cgttcaaggc agtttctact      1200
     ttaaggatga cttgggaatt agtagctccc aatgccgacc acaatggtgg ccaccaagag      1260
     tcaacacttg gtttgaagtt gatcgtctga agatctaccc ggagtacggt tttgtaaaga      1320
     aggtgaattc atcttttaag gacagtaagt ctgaaaccat aatggtgtat aagcagcctg      1380
     aattttgata ccccaccttt accctacgat ggagtgctac tttaaagact agctaggatt      1440
     gagaccgaaa tctcacgcgc tggcacggcc agtagttgat cacttaatga tcaggtgact      1500
     actttatagt caagttggaa cccgtagtat cctatcctta cctaatatcg taagttttat      1560
     ttactggtgt agcgtggttc gaccacctta taaacacttt gaatattagg atcaagctga      1620
     gcatttgaag acactaagtg tggtttgacc atgtgtgtgt tcccatgtct cagtaagaga      1680
     c                                                                      1681
//