ID   AB005611; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   AB005611;
XX
DT   11-FEB-1998 (Rel. 54, Created)
DT   18-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Leek yellow stripe virus CP gene for polyprotein (viral coat protein),
DE   partial cds, clone: Guae-D3.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1678
RA   Sumi S.;
RT   ;
RL   Submitted (08-JUL-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050271.
RX   PUBMED; 9505969.
RA   Tsuneyoshi T., Matsumi T., Natsuaki K.T., Sumi S.;
RT   "Nucleotide sequence analysis of virus isolates indicates the presence of
RT   three potyvirus species in Allium plants";
RL   Arch. Virol. 143(1):97-113(1998).
XX
DR   MD5; 5c8bfaa743473a3f24e939ebc7b211ef.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1678
FT                   /organism="Leek yellow stripe virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="garlic"
FT                   /clone="Guae-D3"
FT                   /note="synonym: leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1087
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /note="C-terminal region"
FT                   /db_xref="GOA:O55522"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:O55522"
FT                   /protein_id="BAA24797.1"
FT                   /translation="YPDLLDRIRKFYCWILEQAPYSELSTVGKAPFISEAALRNLYTDC
FT                   KATESELARYLELYDGNTPTEEIFEYQAGDELDAGTQVNRSQKASADKSIEQRNPLVSQ
FT                   ASTHGNKDVSTSSEASMGKDRDVNVGTTGTFSVPRIKQISRKGLAIPMDGGKSILNLDH
FT                   LLQYKPSQLYISNTRATRAQFASWRTRLQEEYGVTDGEMSIILNGLMVWCIENGTSPNI
FT                   NGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAYIEMRNAEQAYMPRYGLQ
FT                   RNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNARPRLFGLDGNVTTTDEDT
FT                   ERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     218..1084
FT                   /gene="CP"
FT                   /product="viral coat protein"
XX
SQ   Sequence 1678 BP; 538 A; 332 C; 383 G; 425 T; 0 other;
     ctatccagac cttctggacc ggattcgaaa gttttactgt tggattcttg agcaagcccc        60
     atatagtgaa ttaagcacag taggcaaagc accatttatt tctgaagcag ccttacgaaa       120
     cctatacact gattgcaagg caacggagtc ggaattagca agatatcttg aactttatga       180
     tggtaacaca cctacagagg agatattcga ataccaagca ggtgatgaac tcgacgcagg       240
     gacgcaggtg aatagaagcc aaaaagctag tgctgataag tctatagaac aacgaaaccc       300
     attagtatca caagcaagta cacatggaaa taaagatgtt agcactagtt cagaggcaag       360
     catgggcaaa gatagagatg tcaatgttgg caccacagga acatttagtg tgccacgaat       420
     aaagcaaatt tcgagaaaag gtttagcgat tccaatggat ggaggaaagt caatacttaa       480
     cttagaccac ctcttacaat ataagcctag tcaattatac atatcaaaca cgagagccac       540
     tagagcgcaa ttcgcatctt ggagaacaag actacaggag gaatatggtg tcactgatgg       600
     cgagatgagc attattctaa atggcctaat ggtatggtgt atcgaaaatg ggacttcacc       660
     aaatataaat ggagtttgga caatgatgga tggcgaggag caagtcgaat tccctttacg       720
     accagttgta gaacatgcac aaccgacctt gcgacaaata atggcgcatt tctcagcact       780
     tgcagaagca tatattgaga tgcgaaatgc ggaacaagct tatatgccaa gatatggact       840
     acaaaggaat cttacagaca tgagtctcgc acggtacgca tttgactttt atgaagtcac       900
     atcaagaaca ccagttagag cgcgcgaggc ccatgcacaa atgaaagcag cagccttacg       960
     gaacgcaagg ccaaggctgt ttggactaga cggtaacgtc acaaccacgg atgaggacac      1020
     ggagaggcac acagcacatg acgtgaatgc acggatgcac catcttgatg gtgcacatat      1080
     gcagtgatgt ttcggttaat aaccggttat gggcttccac gtaaaaagtc ccgagtgcca      1140
     aacttgtatt ttggctagtg tagtgagact atgattcact cgttcaaggc agtttctact      1200
     ttaaggatga cttgagaatt aatagttctc aatgccggtt acattggtag ccaccaagag      1260
     tcaacacttg gtttgaagct aatcatctga agatttatcc tgagtacggt tttgtaaaga      1320
     aggtgaattc aatcgataag gatagtaagt ctgaaacctt tatggtgtat aagcagcctg      1380
     atttttgata ccccaccttt accctacaat ggagtgctac tttaaagact agctaggatt      1440
     gagaccgaat tctcacgact gcatggccag cggttgatca cctaacgatt agttgacaac      1500
     ttcatagtca atatggaacc cgtagtatcc tatccttacc taatatcgta agttttattt      1560
     actggtgtag cgtggtttac ccaccttata aacactttga atattaggat cgagctgttc      1620
     atttgaagac actaagagtg gttgaccatg tgtgtgttcc tatgttgcag taagagac        1678
//