ID   AB005610; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   AB005610;
XX
DT   11-FEB-1998 (Rel. 54, Created)
DT   18-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Leek yellow stripe virus CP gene for polyprotein (viral coat protein),
DE   partial cds, clone: Gchi3.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1678
RA   Sumi S.;
RT   ;
RL   Submitted (08-JUL-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050271.
RX   PUBMED; 9505969.
RA   Tsuneyoshi T., Matsumi T., Natsuaki K.T., Sumi S.;
RT   "Nucleotide sequence analysis of virus isolates indicates the presence of
RT   three potyvirus species in Allium plants";
RL   Arch. Virol. 143(1):97-113(1998).
XX
DR   MD5; d0d48dc2853388958b41d601d355bbc8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1678
FT                   /organism="Leek yellow stripe virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="garlic"
FT                   /clone="Gchi3"
FT                   /note="synonym: leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1084
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:O55521"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:O55521"
FT                   /protein_id="BAA24796.1"
FT                   /translation="YPDLLDRIRKFYCWILEQAPYSELSAVGKAPFISEMALRNLYTDY
FT                   KATEVELARYLELYANDTTIEDIFEYQAGEELDAGTQASKSSKSNTDKSIEQRNPAPTQ
FT                   TSTGGRKDDDNSDLSSSKDRDVNVGTTGTFSVPRIKQITQKGLSIPMDEGKSVLNLDHL
FT                   LQYKPSQLCISNTRATRAQFKTWRSKLQDEYGVSDSDMSVILNGLVVWCIENGTSPNVN
FT                   GVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMTHFSALAEAYIEMRNSEQAYMPRYGLQR
FT                   NLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRPRLFGLDGNVTTMDEDTE
FT                   RHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     218..1081
FT                   /gene="CP"
FT                   /product="viral coat protein"
XX
SQ   Sequence 1678 BP; 520 A; 336 C; 391 G; 431 T; 0 other;
     ttacccagat cttctcgacc gaattcgtaa attctattgt tggatcctcg aacaagcgcc        60
     gtatagcgag ttgagtgccg ttggaaaggc gccattcatc tctgagatgg ccttgcgcaa       120
     cttgtacact gactataaag ctacagaagt tgagttagca aggtaccttg agctgtatgc       180
     taatgataca accatagaag atatttttga gtaccaagca ggtgaagaac tagatgcagg       240
     cacacaagcg agcaagagct caaagagtaa cacagataaa tctatagagc aacgaaatcc       300
     agcaccaacg caaactagta caggtgggag gaaggatgat gacaactcgg acttaagctc       360
     aagtaaagat agagatgtaa atgtaggcac cacagggacg ttcagtgtgc caagaataaa       420
     acaaatcaca caaaagggct tatcaattcc gatggatgaa ggtaaatcag ttcttaatct       480
     ggatcacctc ctacaatata agcctagtca actatgtata tcaaatacta gagccactag       540
     agcacaattc aaaacttgga gatctaaact acaggatgaa tatggagttt cagatagtga       600
     tatgagtgtc attttgaacg gtttagtggt gtggtgtatt gagaatggca catcaccaaa       660
     cgtaaacgga gtttggacga tgatggacgg tgaagaacaa gttgaatttc ctttgcggcc       720
     agttgtcgaa cacgcacaac caaccctacg acaaataatg acacatttct cagcgcttgc       780
     agaagcctat attgagatga gaaattcgga acaagcgtac atgcccagat acggattgca       840
     gagaaatctc acagatatga gtctcgcacg gtatgcattt gacttttatg aagtcacgtc       900
     aagaacacca gttagagcgc gcgaggctca cgcacagatg aaagcagcag ccttgcggaa       960
     ttcaaggcca aggctgtttg gactagacgg taacgtcaca accatggatg aggacacgga      1020
     gaggcacaca gcacatgacg tgaatgcacg gatgcaccat ctcgatggtg cgcatatgca      1080
     gtgatgtttc ggtttataac cggttatgga cttccactta aaaagtctcg agtgccaaac      1140
     ttgtattttg gctagtttag tgaagctatg attcactcgt tcaaggcagt ttctactcta      1200
     aggatgactt gagaattaat agctctcaat gccggccaca gtggtggcta ccaagatcca      1260
     acacttggtt tgaagttgat cagctgaaga tctatcctaa gtacggtttt gtaaagaagg      1320
     tgagttcaat tgttaaggat agtaagtctg aagcctttat ggtgtatacg cagcctgaat      1380
     tttgataccc cacctttacc ctacgacgga gtgctacttt aaagactagc taggattgag      1440
     accgaattct cacgtgctgg catggccagc ggctaatcac ctaatgattg gttgaccacc      1500
     ttatagtcaa tttggaaacc cgtagtatcc tatccttacc taatatcgta agttttattt      1560
     actggtgtag tgtggtgcga ccaccttata aacactttga atattaggat cgagctgttc      1620
     atttgaagac actaagagtg gttaaccatg tgtgtgttct tatgttgcag taagagac        1678
//