ID   AB004803; SV 1; linear; genomic RNA; STD; VRL; 946 BP.
XX
AC   AB004803;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Shallot latent virus CP gene for coat protein, complete cds, clone: LI-3C1.
XX
KW   .
XX
OS   Shallot latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-946
RA   Sumi S.;
RT   ;
RL   Submitted (12-JUN-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050358.
RX   PUBMED; 9687867.
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143(6):1093-1107(1998).
XX
DR   MD5; 8b1de555c37c1d6351ce4cdd95fb9e00.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..946
FT                   /organism="Shallot latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="leek"
FT                   /clone="LI-3C1"
FT                   /db_xref="taxon:12172"
FT   CDS             25..918
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70730"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70730"
FT                   /protein_id="BAA25779.1"
FT                   /translation="MAGDEETLSEIRKLPTRDPAKNPESERSKAVNDVDIMEREGFEAV
FT                   LRRSESRFNRLKEKWLAELSSVNVTNCGWESGRPKAQIADNLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNQAAIQPLEGLIRAPTDAERIAFATHKKLALTKNSQNSRYANTSAEVTG
FT                   GLFGCVPKNNFRQDRC"
XX
SQ   Sequence 946 BP; 273 A; 218 C; 231 G; 224 T; 0 other;
     ttcacagctt ttgaaattga tattatggct ggagatgaag aaaccctcag tgagatacgg        60
     aagctaccca ccagggaccc tgctaaaaac cctgagagcg aacgcagcaa ggccgtgaac       120
     gatgttgata tcatggaacg cgagggtttt gaagccgtgc tacggcggag tgaaagtaga       180
     ttcaacagac ttaaggagaa atggctggct gagctctcga gtgttaatgt gactaattgc       240
     ggctgggaat caggcaggcc caaagctcaa attgcggaca atttaaaagg ggatgcttca       300
     aatatcttca ctcgcccttc catggatgcg ctattggtgc ggaattacgc ccctgaaagt       360
     aacaatttag ctaccgccga agaattggct aaaatctccg ccaaagtgca agctctgggg       420
     gccccagaag aatgcttagc tgaagtcttt tgggacattt gcatgtactg cactacggcg       480
     ggtagttcgc ccaatgtaaa cccaaaaggg acgatttctg tcggcggaaa agttgtcact       540
     agagatatgg tcgtggccgt cattaaggag tactctacgc ttcgccaagt ctgtcgctgc       600
     tacgcgcccg tcgtctggaa ttatatgcta ttgaacgaac aaccgccagc taattgggac       660
     gctaaaggat tcacagaaaa tacaaaatat gccgctttcg acacttttga cgcagtaact       720
     aaccaagccg ctattcaacc tcttgaaggt ctaataagag cacccactga cgctgagcgc       780
     atagcttttg ctactcacaa gaaattggcc ttaaccaaaa actcccaaaa ctcacgttac       840
     gctaatacgt cggctgaagt cactggtggt ctcttcggtt gtgtgcctaa aaacaatttc       900
     cggcaggatc gatgttgata aagcaaagaa catatcgtag gttact                      946
//