Dbfetch

Dbfetch

ID   AB004684; SV 1; linear; genomic RNA; STD; VRL; 946 BP.
XX
AC   AB004684;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Garlic latent virus gene for coat protein, complete cds, clone: GCHI-3C1.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-946
RA   Sumi S.;
RT   ;
RL   Submitted (08-JUN-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050358.
RX   PUBMED; 9687867.
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143(6):1093-1107(1998).
XX
DR   MD5; c8c849c1bf8fe7c39379ec311c91d5b7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..946
FT                   /organism="Garlic latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="garlic"
FT                   /clone="GCHI-3C1"
FT                   /db_xref="taxon:12458"
FT   CDS             25..918
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70726"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70726"
FT                   /protein_id="BAA25775.1"
FT                   /translation="MTNEEEELSNVQNLPTRDPGTISERERNKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEDLAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNAQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
XX
SQ   Sequence 946 BP; 281 A; 213 C; 227 G; 225 T; 0 other;
     tacacagcgc tctaaattga tattatgact aacgaagaag aagaactcag taacgtgcag        60
     aacttgccga ctcgcgatcc agggactata tccgagcgtg aacgaaacaa agcagtaaac       120
     gatgttggtg tcatggaacg tgaaggtttt gaagccgtcc ttcgaaggag cgaaagcagg       180
     ttcaacaaac ttaaggagaa gtgcatgtct gaattgtcta gcgtgaacgt cacgaactgc       240
     gggtgggagt ctggaagacc caaagctcag cttgctgaca gtctcaaagg ggacgcatcg       300
     aatattttca ctaggccctc catggatgcc ctccttgttc gaaattacgc acctgaaagt       360
     aacaacatgg cgactgctga ggatttggcg aaaatctccg ccaaagtaca agcccttggc       420
     gctccagaag aatgtttagc tgaagtcttc tgggacatct gcatgtactg caccactgca       480
     ggaagttctc caaatgtcaa tcccaaagga actatatctg tcgggggtaa agtcgtaact       540
     agggacatgg tagtagcagt aatcaaagaa tactctacat tgcggcaagt ctgccgctgc       600
     tacgcgcctg tcgtttggaa ttacatgttg ttgaatgaac aaccacccgc aaattgggat       660
     gcaaaagggt tcaccgagaa caccaaatat gctgccttcg atactttcga tgcggtgaca       720
     aataaagctg caatccaacc acttgagggt ctgattcggg cccccactga cgctgaaaga       780
     atcgcatttg caacgcacaa aaagttggcc ctggctaaga atgctcaaaa ctctcgttat       840
     gccaatactt ctgctgaggt tactggaggt ttcttcggat gttttccaaa aaataacttt       900
     agagagaatc gatgttgatc aaacagagaa cttaccgtcg tttatt                      946
//