ID   AB004566; SV 1; linear; genomic RNA; STD; VRL; 1441 BP.
XX
AC   AB004566;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Garlic common latent virus CP, NABP genes for coat protein, nucleic acid
DE   binding protein, complete cds, clone: GF-1.
XX
KW   .
XX
OS   Garlic common latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1441
RA   Sumi S.;
RT   ;
RL   Submitted (03-JUN-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050358.
RX   PUBMED; 9687867.
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143(6):1093-1107(1998).
XX
DR   MD5; 8c33442a426ae5e3a02427453924616a.
DR   EuropePMC; PMC3689765; 23805334.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1441
FT                   /organism="Garlic common latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="garlic"
FT                   /clone="GF-1"
FT                   /db_xref="taxon:47900"
FT   CDS             27..986
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70721"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70721"
FT                   /protein_id="BAA25772.1"
FT                   /translation="MSTSETEELRLQRQASERRDGERRKIEAAIRARQDAAIDTEEPAD
FT                   VQETSVNDVDLRQMENRVQEAKRFLERFNKLKKFQADNMTAGEIKNGGFETGRPKLNIA
FT                   ANLRGDTSNVFTRPSMDALIALDFKAESLAVATAEDLAAITAKFEQLGVPTERLAPLCW
FT                   SIARYCADTSSSYVADPKGTFEYPGGAITRDAVYAVIKEVTTLRAFCRAFAPVVWNEML
FT                   IAKRPPTGWQTKGYTASTKYAAFDTFDYVLNSACVQPLEGIIRVPTDEETIAHMTNKRI
FT                   AIDRNRRNGRFSSTNSLVTGGMFGKDIKTNFNGSNNAD"
FT   CDS             964..1428
FT                   /codon_start=1
FT                   /gene="NABP"
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="InterPro:IPR008891"
FT                   /db_xref="UniProtKB/TrEMBL:O70722"
FT                   /protein_id="BAA25773.1"
FT                   /translation="MDPTMQIDVSLLLAVKNKLCDSGVPTDVAIGIIEPIIKEVRKLQR
FT                   QEEQRLLRFNGCSRSAIKRRAKYLDKCYKCGKQSHYGLCSRNQTISNMEVEYLIRCGTI
FT                   RILTENPQRRKNSIYSSDYEKLVDRSPVYCRVSGPYWRLFRPNLNSLTKV"
XX
SQ   Sequence 1441 BP; 421 A; 281 C; 364 G; 375 T; 0 other;
     tttcaagctt ttggattgaa ataattatgt caactagtga aacagaggag ctgagattgc        60
     aaaggcaggc ttcggagaga cgcgacggtg aacgccgcaa aattgaagcg gctataagag       120
     ctcgacagga tgctgcaatc gatactgagg agcctgctga tgtgcaagaa acgagcgtta       180
     atgatgttga tcttcgtcaa atggaaaaca gggtgcagga agctaagcgg tttttggagc       240
     gcttcaacaa gctcaagaag ttccaggctg acaatatgac cgcaggtgag atcaagaatg       300
     gtggctttga gaccgggaga ccaaaactga atatcgcagc caatttgcgc ggcgacactt       360
     ctaatgtatt caccaggcct agcatggatg ctttaatagc tttagatttc aaggctgaat       420
     cattggcagt tgcgaccgcc gaggaccttg ctgctatcac tgctaaattc gaacagctag       480
     gggtgccaac agagagattg gctcctcttt gttggtcgat tgcaaggtat tgcgccgaca       540
     ctagttcttc atatgtggct gacccaaaag gaacttttga ataccctggg ggtgctataa       600
     ccagggatgc tgtttatgct gtcatcaaag aagttacgac cctgagggct ttctgtagag       660
     ctttcgcacc ggtggtttgg aatgaaatgt taatcgctaa acgaccgccc actggttggc       720
     aaaccaaagg ttacactgct agtacaaagt atgctgcctt tgacactttc gattatgtgc       780
     ttaattctgc ttgtgttcaa ccacttgagg ggatcatacg ggtcccaacc gatgaagaga       840
     ccatagctca catgaccaac aagcggatcg ccatagatag gaataggcgc aatggccggt       900
     tttcaagcac aaacagtcta gtcactgggg gcatgttcgg caaggatatc aaaacaaatt       960
     tcaatggatc caacaatgca gattgatgta agcttacttt tagccgtaaa gaataaattg      1020
     tgtgatagtg gcgtgcctac tgacgtcgcg attggtatta tagaaccaat tatcaaagag      1080
     gtgaggaaat tgcagcgcca agaagagcaa aggctgctac gttttaatgg ttgttctagg      1140
     agtgctatta aaagacgagc taagtatctc gataaatgtt ataagtgtgg taaacaaagt      1200
     cactacgggc tttgttcgcg taatcagact atcagcaaca tggaagtgga gtatcttatc      1260
     cgttgtggga cgattaggat ccttaccgaa aatccacaaa gacggaaaaa ctccatttac      1320
     agttctgatt atgaaaaatt agtagatcgg tctcccgtgt attgtagagt gtcagggcca      1380
     tattggcgac tattcagacc taatttgaat agcttgacga aggtttaata tatttccttg      1440
     t                                                                      1441
//