ID   AB004565; SV 1; linear; genomic RNA; STD; VRL; 1301 BP.
XX
AC   AB004565;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Garlic latent virus genes for coat protein, nucleic acid binding protein,
DE   complete cds, clone: RC-1.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1301
RA   Sumi S.;
RT   ;
RL   Submitted (03-JUN-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050358.
RX   PUBMED; 9687867.
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143(6):1093-1107(1998).
XX
DR   MD5; 2aa835bf087f7b9e465627d280c8bfe3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1301
FT                   /organism="Garlic latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="shallot"
FT                   /clone="RC-1"
FT                   /db_xref="taxon:12458"
FT   CDS             25..918
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70719"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70719"
FT                   /protein_id="BAA25770.1"
FT                   /translation="MANEKEELANVQNLPTRDPETIPERERNKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMAELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTSRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALNKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNLRENRC"
FT   CDS             912..1208
FT                   /codon_start=1
FT                   /gene="NABP"
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:O70720"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:O70720"
FT                   /protein_id="BAA25771.1"
FT                   /translation="MLIKQRTYRRILRAIFKLHTNKNCVDVINIIVSKIVCDKAGASQY
FT                   ARARRAKSIGRCPRCFRCSPGFYFTKNCDTKTCFPGISYNAKVKDFIVDGVTM"
XX
SQ   Sequence 1301 BP; 395 A; 261 C; 304 G; 341 T; 0 other;
     tagacagcgc tctaaattga tattatggct aacgaaaaag aagaactcgc taacgtgcag        60
     aatttgccaa cacgtgaccc agaaacgatt ccagagcgtg aacgaaataa agcggtcaat       120
     gatgttggag ttatggagcg tgaagggttt gaagctgtac ttagaaggag tgagagtaga       180
     ttcaacaaac tcaaagaaaa atgcatggct gagttgtcta gtgttaatgt tacgaattgt       240
     ggttgggaat caggacggcc caaagcacaa cttgctgata gcctcaaggg cgatgcctct       300
     aatattttca cccgcccatc aatggacgca ctcttggtac gaaattacgc accagaaagt       360
     aataatatgg ctactgctga agaattggca aagatttccg ctaaagtgca agcgcttggg       420
     gcccctgagg agtgtttagc tgaggtattc tgggacatat gtatgtattg caccactgca       480
     gggagttccc caaatgttaa tcccaaagga accatttccg tcggtggtaa agttgtaact       540
     agagatatgg ttgtggcggt aattaaagaa tattccacgt cgcgccaagt ctgtcgctgt       600
     tacgcgcccg tggtctggaa ctacatgtta ctgaatgaac agccgcccgc caattgggac       660
     gcaaagggat ttactgagaa taccaaatat gccgctttcg acactttcga tgccgtgaca       720
     aataaagctg caatccaacc actcgagggc ctgattagag cacccactga cgctgaacgc       780
     atagctttcg caacacataa gaagctggcc ctgaataaga actctcaaaa ctctcgctat       840
     gctaacactt ctgctgaagt taccggaggc ttctttggat gttttcctaa aaacaatctg       900
     agggaaaatc gatgttgatc aagcagcgaa cttaccgtag aatattgcgt gctatattta       960
     agttacatac gaataaaaac tgtgtggatg tgattaatat tatcgtgagt aagatagtgt      1020
     gtgataaggc gggggcctcg cagtacgccc gagctcgtag agctaagagt attggtagat      1080
     gccctcgctg tttccggtgt tcacctggtt tttacttcac taaaaactgt gacaccaaga      1140
     cttgtttccc aggtattagc tataatgcaa aagtcaagga ctttatagtt gatggtgtaa      1200
     caatgtgaaa ccctactata aaccctgatt agttgcccat aaaacctaaa taatgtataa      1260
     gtgggaacgt ataaaataat ttgtttttaa aatattttcg c                          1301
//