ID   AB004544; SV 1; linear; genomic RNA; STD; VRL; 1378 BP.
XX
AC   AB004544;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Shallot latent virus RNA for viral coat protein and nucleic acid binding
DE   protein, complete cds, clone: WOC-2.
XX
KW   .
XX
OS   Shallot latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1378
RA   Sumi S.;
RT   ;
RL   Submitted (02-JUN-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050358.
RX   PUBMED; 9687867.
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143(6):1093-1107(1998).
XX
DR   MD5; 279a9ecf421b4dfc942aa2b1febc4a9c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1378
FT                   /organism="Shallot latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="Welsh onion"
FT                   /clone="WOC-2"
FT                   /db_xref="taxon:12172"
FT   CDS             111..995
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70717"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70717"
FT                   /protein_id="BAA25757.1"
FT                   /translation="MAKEAEELSKLPTRDPGTIPERERNRTVNDVGIMDREGFEAVLRR
FT                   SEDRFNKLKEKCLSELSSVNVTNCGWESGRPKAHLADSLKGDASNIFTRPSMDALLVRN
FT                   YAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCATAGSSPNVNPKGTISV
FT                   GGKVVTRDMVVAVIKEYTTLRQFCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKYAAF
FT                   DTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSNNSRYANTSAEVTGGFF
FT                   GCVPKHNFRENRC"
FT   CDS             989..1285
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="NABP"
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:O70718"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:O70718"
FT                   /protein_id="BAA25758.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTDKNCVDVINIIVNKIVCESAGASHY
FT                   ARARRAKSIGRCPRCFRCSPGFYFTKNCDTKTCFPGISYNAKVKSFIVDGVTM"
XX
SQ   Sequence 1378 BP; 384 A; 281 C; 327 G; 386 T; 0 other;
     tgagtcagtt aaatttctag gttgtgactt cacgaaagat ttcatcgatt tcgctaagca        60
     ggctaaaccc tttggtacgc tttaggttaa cagcattctg ttttgatatt atggctaagg       120
     aagcagaaga actcagtaag ttgccgactc gcgaccccgg tactatccct gagcgcgaac       180
     gaaacaggac agttaatgat gtaggcatta tggataggga aggttttgaa gcggtgcttc       240
     gacgcagtga ggatcgtttc aacaaattaa aggagaagtg cttatctgag ctttctagcg       300
     ttaacgttac caactgtggc tgggaatctg ggagacccaa agcacattta gctgacagtc       360
     tcaagggcga tgcttctaac attttcaccc gtccttctat ggacgcccta cttgtgcgaa       420
     attacgcacc cgagagtaac aacctagcga ctgccgagga gctagctaag atttccgcga       480
     aagtccaggc gctaggtgcc ccggaagagt gtttggctga ggtgttctgg gacatctgta       540
     tgtattgtgc cactgctggt agttctccca acgtcaatcc caaaggtacc atctccgtcg       600
     gtggtaaagt tgtgaccaga gacatggttg tggctgtcat taaagaatac actactctgc       660
     gacaattttg ccgttgctac gcaccggttg tatggaatta catgttatta aatgagcagc       720
     cgccggcaaa ttgggatgct aaaggcttca ctgagaacac caaatacgcg gctttcgaca       780
     cctttgatgc agtgacaaac aaagcagcga ttcaaccact tgaaggtcta attagggccc       840
     ccactgatgc tgaaaggatc gcttttgcaa cgcacaaaaa gttggctttg gctaaaaatt       900
     cgaataattc tcgttatgcc aacacttctg ctgaggttac tggaggtttc ttcggatgtg       960
     tccctaaaca taatttcaga gagaatcgat gttgatcaaa caaaggactt accgcagatt      1020
     actgcgcgct atatttaagt tacatactga taagaattgt gtggatgtga taaacatcat      1080
     agtaaataaa atcgtgtgtg agagtgctgg ggcctcccat tatgctcgtg ctcgtagagc      1140
     caagagcata ggtaggtgtc cccgttgttt caggtgttca cctggtttct atttcactaa      1200
     gaattgtgat actaagactt gtttcccagg tattagctat aacgcaaagg tcaagagctt      1260
     tatagttgat ggtgtaacaa tgtgaaaccc tactatggat cttgatctgt tgcccataaa      1320
     acctaagtaa tgtataagtg ggaacgtata aaaaaatttg tttttaaaat attttcgc        1378
//