ID   AB004458; SV 1; linear; genomic RNA; STD; VRL; 1300 BP.
XX
AC   AB004458;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   30-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Garlic latent virus CP, NABP genes for coat protein, nucleic acid binding
DE   protein, complete cds, clone: CLC-1.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1300
RA   Sumi S.;
RT   ;
RL   Submitted (30-MAY-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd, Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050358.
RX   PUBMED; 9687867.
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143(6):1093-1107(1998).
XX
DR   MD5; 83a84b749323b9a61649ab8e666a0f5c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1300
FT                   /organism="Garlic latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="Chinese leek"
FT                   /clone="CLC-1"
FT                   /db_xref="taxon:12458"
FT   CDS             24..917
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70715"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70715"
FT                   /protein_id="BAA25768.1"
FT                   /translation="MANEEEEISRMQNLPARDPSTIPEQERSKAVNDVGVMDRENFDAV
FT                   LRRSEDRFNKLKEKCLSELSSVRVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEELAKISAKIQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDEERIAFATHKKLALAKNAQNSRYSNTSAEVTG
FT                   GFFGCFPKHNFRENRC"
FT   CDS             911..1207
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="NABP"
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:O70716"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:O70716"
FT                   /protein_id="BAA25769.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDIIDIIVNKIVCGSAGASKY
FT                   ARARRAKSIGRCPRCFRCAPGFYFTKNCDTKTCFPGISYNEKVKNFIVDGVTM"
XX
SQ   Sequence 1300 BP; 383 A; 265 C; 295 G; 357 T; 0 other;
     ttaacggcgc tctaattgat attatggcta acgaagaaga agaaatcagc agaatgcaga        60
     accttcccgc tcgtgatcct agcactatcc ctgaacagga acgcagcaag gccgtcaacg       120
     atgttggagt gatggatcgt gagaatttcg acgctgtgct gcgtaggagt gaagacaggt       180
     tcaacaagct taaagaaaaa tgcctatcag aattatctag cgtgagagtt actaattgtg       240
     gctgggaatc cggtagaccc aaagctcaac ttgccgatag tctcaagggg gacgcttcca       300
     atatcttcac tcgtccctca atggatgctc tacttgttag aaattacgcg cctgaaagca       360
     ataacatggc tacagctgaa gagttggcta aaatctctgc taagattcag gctcttgggg       420
     ctcctgaaga gtgtttggct gaggtcttct gggacatttg catgtattgt acaacggccg       480
     gcagctcccc gaacgtgaac ccaaaaggga ccatctccgt tggaggcaaa gtcgtgacta       540
     gagacatggt tgtcgctgtt atcaaagagt actctacatt gcgtcaagtt tgtcgctgtt       600
     acgcacctgt ggtctggaat tacatgctgt taaacgagca accacctgct aattgggacg       660
     ctaaaggatt taccgaaaat actaaatatg ctgctttcga cacttttgat gctgtcacca       720
     ataaggctgc cattcaacca cttgaaggac taattagagc cccaactgat gaggaacgca       780
     ttgcctttgc tacgcacaag aagttggccc tagccaaaaa tgcccagaac tcacgttatt       840
     ccaatacttc tgccgaggtc actggtggct tcttcggatg ttttccaaaa cataatttca       900
     gagaaaatcg atgttgatca agcaaagaac ttaccgtaga ttattgcgtg ctatatttaa       960
     gttgcatacc aataaaaatt gtgtggatat tatcgatatt attgttaata aaatagtgtg      1020
     tggaagtgct ggggcttcaa agtatgctcg agctcgtaga gctaagagca taggcagatg      1080
     ccctagatgt ttccggtgtg ctcccggttt ttatttcact aaaaattgtg atactaaaac      1140
     ttgtttccca ggcattagct ataatgaaaa agtcaagaac tttatagttg atggtgtaac      1200
     aatgtgaaac ccgactatag ttcttggcaa gttgcccata aaacctaagt aatgcataag      1260
     tgggaacgta taaaataatt tgtttttaaa atattttcgc                            1300
//