ID   AB004456; SV 1; linear; genomic RNA; STD; VRL; 1292 BP.
XX
AC   AB004456;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   30-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Shallot latent virus gene for coat protein and nucleic acid binding
DE   protein, complete cds, clone: CLC-1.
XX
KW   .
XX
OS   Shallot latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1292
RA   Sumi S.;
RT   ;
RL   Submitted (30-MAY-1997) to the INSDC.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd, Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RX   DOI; 10.1007/s007050050358.
RX   PUBMED; 9687867.
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143(6):1093-1107(1998).
XX
DR   MD5; 805f93520236efb84844b3fbf7b0a9b0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1292
FT                   /organism="Shallot latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="Chinese leek"
FT                   /clone="CLC-1"
FT                   /db_xref="taxon:12172"
FT   CDS             25..909
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70711"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70711"
FT                   /protein_id="BAA25764.1"
FT                   /translation="MAREAEELGNLPTRDPGTIPERERSRSVNDVGVMEREGFEAVLRR
FT                   SEDRFNKLKEKCLSELSSINVTNCGWESGRPKAHLADSLKGDASNIFTRPSMDALLVRN
FT                   YAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCATAGSSPNVNPKGTISV
FT                   GGKVVTRDMVVAVIKEYTTLRQFCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKYAAF
FT                   DTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSINSRYANTSAEVTGGFF
FT                   GCIPKHNFRENRC"
FT   CDS             903..1199
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="NABP"
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:O70712"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:O70712"
FT                   /protein_id="BAA25765.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVINIIVNKIVCESAGASHY
FT                   AQARRAKSIGRCPRCFRCSPGFYFTKNCDTKTCSPGISYNAKVKSFIVDGVTM"
XX
SQ   Sequence 1292 BP; 365 A; 261 C; 307 G; 359 T; 0 other;
     ttaacagcgt tctgaattga tattatggct agggaagcag aagaactcgg taacttgcca        60
     actcgcgatc ctggaacgat tcctgagcgc gaacggagta ggtccgtaaa tgatgttggc       120
     gtcatggaga gagagggctt tgaagctgtt ctccgacgga gtgaagatcg atttaacaag       180
     ttaaaggaga agtgcctatc tgaattatct agcatcaatg tcaccaattg tggttgggaa       240
     tctgggagac ccaaggcgca tttggctgac agtctcaaag gtgacgcatc taacattttt       300
     actcgcccct ctatggatgc cttgcttgta cggaactatg ctcctgagag taataatttg       360
     gcgacggctg aagaactggc gaagatttcg gctaaagtcc aagctttagg cgctcctgaa       420
     gagtgtttgg ctgaagtatt ttgggacatt tgcatgtatt gcgccaccgc aggtagctct       480
     ccaaacgtca atcctaaagg tactatctcc gtcggcggga aagtcgttac tagagacatg       540
     gttgtggccg tcattaaaga atacacgaca ctgcgccaat tttgccgttg ctacgcgcca       600
     gtcgtatgga attacatgct attaaacgag cagcctccag ctaattggga tgcgaagggc       660
     tttacagaga atacaaaata cgccgctttc gacacttttg atgccgtgac taataaagca       720
     gcgatccaac cccttgaggg tctgataaga gcccccactg atgctgagag gattgctttt       780
     gccactcaca agaaattagc tttggccaaa aattcaatta actctcgtta tgccaacacg       840
     tctgctgaag tcactggagg tttcttcgga tgtatcccta aacacaattt cagagagaat       900
     cgatgttgat aaaacaaaga acttaccgca ggttactgcg tgctatattt aagttgcata       960
     ctaataagaa ctgtgtggat gtgataaaca tcatagttaa taagatagtg tgtgagagtg      1020
     ctggggcttc ccactatgcc caagctcgta gagctaaaag cataggtagg tgtccccgtt      1080
     gtttcaggtg ttcacctggt ttctatttca ctaagaattg tgatactaaa acttgttccc      1140
     cgggtattag ctataacgca aaggtcaaga gctttatagt tgatggtgta acaatgtgaa      1200
     accctactgt agatcttgat ctgttgccca taaaacctaa ttaatgtata agtgggaacg      1260
     tataaaataa tttgttttta aaatattttc gc                                    1292
//