Dbfetch
ID AB114280; SV 1; linear; gDNA; STD; MUS; 3184 BP. XX AC AB114280; AB114273-AB114279; XX DT 06-DEC-2011 (Rel. 201149-2, arrived in LIGM-DB) DT 15-JUN-2024 (Rel. 202424-6, Last updated, Version 3) XX DE Mus musculus H2-K gene for MHC class I heavy chain H2-K, complete cds, DE strain:NOD/Shi. XX KW antigen receptor; MH1; MH1-Alpha; KW Major histocompatibility superfamily (MhSF); regular; gDNA; undefined. XX OS Mus musculus (house mouse) OC cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; OC Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; OC Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; OC Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; OC Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus. XX RN [1] RP 1-3184 RA Inoue K., Ikegami H., Fujisawa T., Noso S., Nojima K., Babaya N., RA Itoi-babaya M., Ogihara T.; RT ; RL Submitted (08-JUL-2003) to the INSDC. RL Kaori Inoue, Osaka University Graduate School of Medicine, Department of RL Geriatric Medicine; 2-2 Yamadaoka, Suita, Osaka, 565-0871, Japan RL (E-mail:inoue@geriat.med.osaka-u.ac.jp, Tel:81-6-6879-3852(ex.3852), RL Fax:81-6-6879-3857) XX RN [2] RX DOI; 10.1016/S0165-2478(97)00101-6. RX PUBMED; 9373213. RA Fukuoka M., Tokushima M., Koarada S., Sai T., Miyake K., Kimoto M.; RT "Analysis of Vbeta4 T cell receptor CDR3 repertoire in BALB/c and (NZB x RT NZW)F1 mice"; RL Immunol. Lett. 59(2):63-69(1997). XX DR MD5; 1b02da12c35c80b39f473a2a62a34134. XX CC IMGT/LIGM-DB annotation level: keyword level XX FH Key Location/Qualifiers (from EMBL) FH FT source 1..3184 FT /organism="Mus musculus" FT /chromosome="17" FT /strain="NOD/Shi" FT /mol_type="genomic DNA" FT /db_xref="taxon:10090" FT mRNA join(661..753,883..1152,1300..1575,1717..1992,2135..2251, FT 2391..2423,2550..2588,2725..3184) FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT exon 661..753 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /number=1 FT 5'UTR 661..689 FT CDS join(690..753,883..1152,1300..1575,1717..1992,2135..2251, FT 2391..2423,2550..2588,2725..2756) FT /codon_start=1 FT /transl_table=1 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /db_xref="GOA:Q5KTQ2" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="MGI:MGI:95904" FT /db_xref="UniProtKB/TrEMBL:Q5KTQ2" FT /protein_id="BAD86735.1" FT /translation="MAPCTLLLLLAAALAPTQTRAGPHSLRYFVTAVSRPGLGEPRFIA FT VGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWEEQTQRAKSDEQWFRVSLRTAQR FT YYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGRDYIALNEDLKTWTAADTAALI FT TRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLRTDSPKAHVTYHPRSQVDVTL FT RCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPLGKEQNYTCH FT VHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGAVVAFVMKMRRNTGGKGVN FT YALAPGSQTSDLSLPDGKVMVHDPHSLA" FT gap 762..861 FT /estimated_length=unknown FT exon 883..1152 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /number=2 FT gap 1175..1274 FT /estimated_length=unknown FT exon 1300..1575 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /number=3 FT gap 1594..1693 FT /estimated_length=unknown FT exon 1717..1992 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /number=4 FT gap 2009..2108 FT /estimated_length=unknown FT exon 2135..2251 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /number=5 FT gap 2266..2365 FT /estimated_length=unknown FT exon 2391..2423 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /number=6 FT gap 2437..2536 FT /estimated_length=unknown FT exon 2550..2588 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /number=7 FT gap 2603..2702 FT /estimated_length=unknown FT exon 2725..3184 FT /gene="H2-K" FT /product="MHC class I heavy chain H2-K" FT /number=8 FT 3'UTR 2757..3184 XX SQ Sequence 3184 BP; 533 A; 673 C; 716 G; 562 T; 700 other; acctgcagcc acagactttt catctaggaa ttaacacaag aaatctgtgt cccagcacag 60 ggctgagaag acagatcctg agggaaaaga cgaagtatcc tctttataga agagagtcct 120 gcactcaggc ttggcagtgt gagccgccca ttgcaggtga acagagcctg gtctctgtgg 180 ggtccgtgtg gggcttgcag cccagcgcct cgactttaag gaaaagcctc tctccccact 240 gcatccctaa gcgcttgtgt cgccattgta ttcccggaag aggcttttct tctagaagac 300 tccagggtct gacttctgaa gagaagaaga aagaggaaga gtggaagaga ggacacagag 360 agtctggcct gcgggtctct cctggtgttt tgagagtttc tggatcagaa ctcggagacg 420 acagcacagg gttcaggcaa agtcttagtc gccaggcagt gaggtcaggg gtggggaagc 480 ccagggctgg ggattcccca tctccacagt ttcacttctg cacctaacct gggtcaggtc 540 cttctgtccg gacactgttg acgcgctgtc agctcttacc cccattgggt ggcgcgatca 600 ccaagaacca atcagtgtcg ccgcggacgc tggctataaa gtccacgcag cccgcggaac 660 tcagaagtcg ctaatcgccg acaggtgcga tggcaccctg cacgctgctc ctgctgttgg 720 cggccgccct ggcccccact cagacccgcg cgggtgagtg cnnnnnnnnn nnnnnnnnnn 780 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 840 nnnnnnnnnn nnnnnnnnnn nctcaccgcg cgccgccccc aggcccacat tcgctgaggt 900 atttcgtcac cgccgtgtcc cggcccggcc tcggggagcc ccggttcatc gctgtcggct 960 acgtggacga cacgcagttc gtgcgcttcg acagcgacgc ggataatccg agatttgagc 1020 cgcgggcgcc ctggatggag caggaggggc cggagtattg ggaggagcag acacagagag 1080 ccaagagcga tgagcagtgg ttccgagtga gcctgaggac cgcacagaga tactacaacc 1140 agagcaaggg cggtgagtga ccccgggtag gaggnnnnnn nnnnnnnnnn nnnnnnnnnn 1200 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260 nnnnnnnnnn nnnncggggc tgaccgcggg gtcccgcagg ctctcacacg ttccagcgga 1320 tgttcggctg tgacgtgggg tcggactggc gcctcctccg cgggtaccag cagttcgcct 1380 acgacggccg cgattacatc gccctgaacg aagacctgaa aacgtggacg gcggcggaca 1440 cggcggcgct gatcaccaga cgcaagtggg agcaggctgg tgatgcagag tattacaggg 1500 cctacctaga gggcgagtgc gtggagtggc tccgcagata cctggagctc gggaatgaga 1560 cgctgctgcg cacaggtgca ggggccgcgg gcannnnnnn nnnnnnnnnn nnnnnnnnnn 1620 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1680 nnnnnnnnnn nnngatttct taaatcttcc acacagattc cccaaaggcc catgtgacct 1740 atcaccccag atctcaagtt gatgtcaccc tgaggtgctg ggccctgggc ttctaccctg 1800 ctgatatcac cctgacctgg cagttgaatg gggaggacct gacccaggac atggagcttg 1860 tagagaccag gcctgcaggg gatggaacct tccagaagtg ggcagctgtg gtggtgcctc 1920 ttgggaagga gcagaattac acatgccatg tgcaccataa ggggctgcct gagcctctca 1980 ccctgagatg gagtaaggag ggtgtgggnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2040 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2100 nnnnnnnntc atttcttgta cctgtccttc ccagagcttc ctccatccac tgtctccaac 2160 acggtaatca ttgctgttct ggttgtcctt ggagctgcaa tagtcactgg agctgtggtg 2220 gcttttgtga tgaagatgag aaggaacaca ggtaggaaag ggcagnnnnn nnnnnnnnnn 2280 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2340 nnnnnnnnnn nnnnnnnnnn nnnnnactct cacagctttt cttctcacag gtggaaaagg 2400 agtgaactat gctctggctc caggttttta ccctagnnnn nnnnnnnnnn nnnnnnnnnn 2460 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2520 nnnnnnnnnn nnnnnngttt ttaccctagg ctcccagacc tctgatctgt ctctcccaga 2580 tggtaaaggt gacactctag ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2640 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2700 nntgttcgaa tgttgtcttc acagtgatgg ttcatgaccc tcattctcta gcgtgaagac 2760 agctgcctgg agtggacttg gtgacagaca atgtcttcac acatctcctg tgacatccag 2820 agccctcagt tctctttagt caagtgtctg atgttccctg tgagcctatg gactcaaagt 2880 gaagaactgt ggagcccagt ccacccctcc acaccagcac cctgtccctg cactgctctg 2940 tcttcccttc cacagccaac cttgctggtt cagccaaaca ctgggggaca tctgcagcct 3000 gtcagctcca tgctaccctg acctgcagct cctcacttcc acactgagaa tagtaatttg 3060 aatgtaacct tgattgttat catcttgacc tagggctgat ttcttgttaa tttcatgttt 3120 agagttttgt ttgtttgttt gatttgtttt ttttttttga agaaataaat gatagatgaa 3180 taaa 3184 //