###################################################################### # dbfetch EMBOSS 4 database definitions # # http://www.ebi.ac.uk/Tools/dbfetch/dbfetch/emboss4.databases # Tue Jul 14 17:43:30 BST 2026 ###################################################################### # Database terms: null # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB chembl [ type: P comment: "ChEMBL Targets via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: chembl formatentry: fasta ] # Database terms: EDAM_topic:3042 # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ena_coding [ type: N comment: "ENA Coding via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ena_coding formatentry: embl ] # Database terms: EDAM_topic:3042 # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ena_geospatial [ type: N comment: "ENA Geospatial via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ena_geospatial formatentry: embl ] # Database terms: EDAM_topic:3042 # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ena_noncoding [ type: N comment: "ENA Non-coding via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ena_noncoding formatentry: embl ] # Database terms: EDAM_topic:3042 # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ena_rrna [ type: N comment: "ENA rRNA via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ena_rrna formatentry: embl ] # Database terms: EDAM_topic:3042 MIR:00000029 DRCAT:EMBL # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ena_sequence [ type: N comment: "ENA Sequence via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ena_sequence formatentry: embl ] # Database terms: EDAM_topic:3042 MIR:00000029 DRCAT:EMBL # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ena_sequence_conexp [ type: N comment: "ENA Sequence Constructed Expanded via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ena_sequence_conexp formatentry: embl ] # Database terms: EDAM_topic:3042 MIR:00000029 # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ena_sva [ type: N comment: "ENA/SVA via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ena_sva formatentry: embl ] # Database terms: EDAM_topic:3042 MIR:00000003 DRCAT:Ensembl # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ensemblgene [ type: N comment: "Ensembl Gene via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=ensemblgene&id=%s&format=embl&style=raw" formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:Ensembl-Genome DRCAT:EnsemblBacteria DRCAT:EnsemblFungi DRCAT:EnsemblMetazoa DRCAT:EnsemblPlants DRCAT:EnsemblProtists # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ensemblgenomesgene [ type: N comment: "Ensembl Genomes Gene via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=ensemblgenomesgene&id=%s&format=embl&style=raw" formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:Ensembl-Genome DRCAT:EnsemblBacteria DRCAT:EnsemblFungi DRCAT:EnsemblMetazoa DRCAT:EnsemblPlants DRCAT:EnsemblProtists # Data terms: EDAM_data:2046 # Syntax terms: EDAM_format:1954 DB ensemblgenomestranscript [ type: N comment: "Ensembl Genomes Transcript via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ensemblgenomestranscript formatentry: fasta ] # Database terms: EDAM_topic:3042 MIR:00000003 DRCAT:Ensembl # Data terms: EDAM_data:2046 # Syntax terms: EDAM_format:1954 DB ensembltranscript [ type: N comment: "Ensembl Transcript via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ensembltranscript formatentry: fasta ] # Database terms: EDAM_topic:3043 # Data terms: EDAM_data:2888 # Syntax terms: EDAM_format:1927 DB epo_prt [ type: P comment: "EPO Proteins via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: epo_prt formatentry: swiss ] # Database terms: EDAM_topic:3042 DRCAT:IMGT_HLA # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB imgthla [ type: N comment: "IMGT/HLA via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: imgthla formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IMGT_HLA # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB imgthlacds [ type: N comment: "IMGT/HLA (nucleotide cds) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: imgthlacds formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IMGT_HLA # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB imgthlagen [ type: N comment: "IMGT/HLA (nucleotide genomic) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: imgthlagen formatentry: embl ] # Database terms: EDAM_topic:3043 DRCAT:IMGT_HLA # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB imgthlap [ type: P comment: "IMGT/HLA (Protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: imgthlap formatentry: fasta ] # Database terms: EDAM_topic:3043 DRCAT:IMGT_HLA # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB imgthlapro [ type: P comment: "IMGT/HLA (protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: imgthlapro formatentry: fasta ] # Database terms: EDAM_topic:3042 DRCAT:IMGT_LIGM # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB imgtligm [ type: N comment: "IMGT/LIGM-DB via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: imgtligm formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IPD-KIR # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdkir [ type: N comment: "IPD-KIR via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdkir formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IPD-KIR # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdkircds [ type: N comment: "IPD-KIR (nucleotide cds) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdkircds formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IPD-KIR # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdkirgen [ type: N comment: "IPD-KIR (nucleotide genomic) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdkirgen formatentry: embl ] # Database terms: EDAM_topic:3043 DRCAT:IPD-KIR # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB ipdkirp [ type: P comment: "IPD-KIR (Protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdkirp formatentry: fasta ] # Database terms: EDAM_topic:3043 DRCAT:IPD-KIR # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB ipdkirpro [ type: P comment: "IPD-KIR (protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdkirpro formatentry: fasta ] # Database terms: EDAM_topic:3042 DRCAT:IPD-MHC # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdmhc [ type: N comment: "IPD-MHC via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdmhc formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IPD-MHC # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdmhccds [ type: N comment: "IPD-MHC (nucleotide cds) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdmhccds formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IPD-MHC # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdmhcgen [ type: N comment: "IPD-MHC (nucleotide genomic) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdmhcgen formatentry: embl ] # Database terms: EDAM_topic:3043 DRCAT:IPD-MHC # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB ipdmhcp [ type: P comment: "IPD-MHC (Protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdmhcp formatentry: fasta ] # Database terms: EDAM_topic:3043 DRCAT:IPD-MHC # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB ipdmhcpro [ type: P comment: "IPD-MHC (protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdmhcpro formatentry: fasta ] # Database terms: EDAM_topic:3042 DRCAT:IPD-KIR # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdnhkir [ type: N comment: "IPD-NHKIR via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdnhkir formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IPD-NHKIR # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdnhkircds [ type: N comment: "IPD-NHKIR (nucleotide cds) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdnhkircds formatentry: embl ] # Database terms: EDAM_topic:3042 DRCAT:IPD-NHKIR # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1927 DB ipdnhkirgen [ type: N comment: "IPD-NHKIR (nucleotide genomic) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdnhkirgen formatentry: embl ] # Database terms: EDAM_topic:3043 DRCAT:IPD-NHKIR # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB ipdnhkirp [ type: P comment: "IPD-NHKIR (Protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdnhkirp formatentry: fasta ] # Database terms: EDAM_topic:3043 DRCAT:IPD-NHKIR # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB ipdnhkirpro [ type: P comment: "IPD-NHKIR (protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: ipdnhkirpro formatentry: fasta ] # Database terms: EDAM_topic:3043 # Data terms: EDAM_data:2888 # Syntax terms: EDAM_format:1927 DB jpo_prt [ type: P comment: "JPO Proteins via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: jpo_prt formatentry: swiss ] # Database terms: EDAM_topic:3043 # Data terms: EDAM_data:2888 # Syntax terms: EDAM_format:1927 DB kipo_prt [ type: P comment: "KIPO Proteins via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: kipo_prt formatentry: swiss ] # Database terms: null # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB mp [ type: P comment: "MEROPS-MP via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: mp formatentry: fasta ] # Database terms: null # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB mpep [ type: P comment: "MEROPS-MPEP via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: mpep formatentry: fasta ] # Database terms: null # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB mpro [ type: P comment: "MEROPS-MPRO via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: mpro formatentry: fasta ] # Database terms: EDAM_topic:3042 DB nrnl1 [ type: N comment: "Patent DNA NRL1 via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=nrnl1&id=%s&format=fasta&style=raw" formatentry: fasta ] # Database terms: EDAM_topic:3042 DB nrnl2 [ type: N comment: "Patent DNA NRL2 via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=nrnl2&id=%s&format=fasta&style=raw" formatentry: fasta ] # Database terms: EDAM_topic:3043 DB nrpl1 [ type: P comment: "Patent Protein NRL1 via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=nrpl1&id=%s&format=fasta&style=raw" formatentry: fasta ] # Database terms: EDAM_topic:3043 DB nrpl2 [ type: P comment: "Patent Protein NRL2 via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=nrpl2&id=%s&format=fasta&style=raw" formatentry: fasta ] # Database terms: EDAM_topic:3042 MIR:00000039 DRCAT:RefSeq # Data terms: EDAM_data:2889 # Syntax terms: EDAM_format:1936 DB refseqn [ type: N comment: "RefSeq (nucleotide) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: refseqn formatentry: refseq ] # Database terms: EDAM_topic:3043 MIR:00000039 DRCAT:RefSeq # Data terms: EDAM_data:2888 # Syntax terms: EDAM_format:1936 DB refseqp [ type: P comment: "RefSeq (protein) via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: refseqp formatentry: refseq ] # Database terms: EDAM_topic:3043 MIR:00000041 DRCAT:UniParc # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB uniparc [ type: P comment: "UniParc via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=uniparc&id=%s&format=fasta&style=raw" formatentry: fasta ] # Database terms: EDAM_topic:3043 MIR:00000005 DRCAT:UniProt DB uniprotkb [ type: P comment: "UniProtKB via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: uniprotkb formatentry: swiss ] # Database terms: EDAM_topic:3043 DRCAT:UniRef # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB uniref100 [ type: P comment: "UniRef100 via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=uniref100&id=%s&format=fasta&style=raw" formatentry: fasta ] # Database terms: EDAM_topic:3043 DRCAT:UniRef # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB uniref50 [ type: P comment: "UniRef50 via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=uniref50&id=%s&format=fasta&style=raw" formatentry: fasta ] # Database terms: EDAM_topic:3043 DRCAT:UniRef # Data terms: EDAM_data:2047 # Syntax terms: EDAM_format:1954 DB uniref90 [ type: P comment: "UniRef90 via. dbfetch" methodentry: url url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=uniref90&id=%s&format=fasta&style=raw" formatentry: fasta ] # Database terms: EDAM_topic:3043 MIR:00000005 DRCAT:UniSave # Data terms: EDAM_data:2888 # Syntax terms: EDAM_format:1977 DB unisave [ type: P comment: "UniSave via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: unisave formatentry: swiss ] # Database terms: EDAM_topic:3043 # Data terms: EDAM_data:2888 # Syntax terms: EDAM_format:1927 DB uspto_prt [ type: P comment: "USPTO Proteins via. dbfetch" methodentry: dbfetch url: "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch" dbalias: uspto_prt formatentry: swiss ]