######################################################################
# dbfetch database information - YAML
#
# http://www.ebi.ac.uk/Tools/dbfetch/dbfetch/dbfetch.databases
# Tue Jul 14 17:08:38 BST 2026
######################################################################

afdb: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
  aliasList: [alphafold, alphafolddb]
  dataResourceInfoList:
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://alphafold.ebi.ac.uk/',
    name: AlphaFold}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://alphafold.ebi.ac.uk/',
    name: AlphaFold_UniProtIDs}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/seqret.html',
    name: EMBOSS seqret}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ncbi.nlm.nih.gov/books/NBK1763/',
    name: NCBI BLAST blastdbcmd}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.uniprot.org/',
    name: UniProt.org}
  databaseTerms: ['EDAM_topic:3043', 'MIR:00000005', 'DRCAT:AlphaFold']
  defaultFormat: fasta
  description: ''
  displayName: AlphaFold DB
  exampleIdentifiers:
    accessionList: [AF-P35858-F1, P35858, AF-P35859-F1, P35859]
  formatInfoList:
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1954', pearson, fa]
    dataTerms: ['EDAM_data:2047']
    name: default
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:1954']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:3464', aligned_error, aligned-error, par]
    dataTerms: ['EDAM_data:0883']
    name: json
    styleInfoList:
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    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: application/json, name: raw}
    syntaxTerms: ['EDAM_format:3464']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1477', cif]
    dataTerms: ['EDAM_data:0883']
    name: mmcif
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:1477']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1476', pdbe]
    dataTerms: ['EDAM_data:0883']
    name: pdb
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:1476']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1954', pearson, fa]
    dataTerms: ['EDAM_data:2047']
    name: fasta
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:1954']
  href: https://alphafold.ebi.ac.uk/
  name: afdb
cdp: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
  aliasList: [coviddataportal, enacovid]
  dataResourceInfoList:
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ebi.ac.uk/ena/',
    name: ENA Browser}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/seqret.html',
    name: EMBOSS seqret}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ncbi.nlm.nih.gov/books/NBK1763/',
    name: NCBI BLAST blastdbcmd}
  databaseTerms: ['EDAM_topic:3042']
  defaultFormat: fasta
  description: COVID-19 DATA PORTAL ENA Consensus Sequences
  displayName: CDP
  exampleIdentifiers:
    accessionList: [ERR7457558, ERR7457272, ERR7370701, ERR7384326, ERR7457401]
  formatInfoList:
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1954', pearson, fa]
    dataTerms: ['EDAM_data:2047', 'EDAM_data:2046']
    name: default
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:1954']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:2183']
    dataTerms: ['EDAM_data:2889']
    name: cdpxml
    styleInfoList:
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    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw}
    syntaxTerms: ['EDAM_format:2183']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1954', pearson, fa]
    dataTerms: ['EDAM_data:2047', 'EDAM_data:2046']
    name: fasta
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:1954']
  href: https://www.ebi.ac.uk/ena/
  name: cdp
chembl: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
  dataResourceInfoList:
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ncbi.nlm.nih.gov/books/NBK1763/',
    name: NCBI BLAST blastdbcmd}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/seqret.html',
    name: EMBOSS seqret}
  defaultFormat: fasta
  description: ChEMBL (Sequences from a manually curated database of bioactive molecules with drug-like properties)
  displayName: ChEMBL Targets
  exampleIdentifiers:
    accessionList: [CHEMBL3038458_P02708]
  formatInfoList:
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    aliases: ['EDAM_format:1954', pearson, fa]
    dataTerms: ['EDAM_data:2047']
    name: default
    styleInfoList:
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    syntaxTerms: ['EDAM_format:1954']
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    aliases: ['EDAM_format:1954', pearson, fa]
    dataTerms: ['EDAM_data:2047']
    name: fasta
    styleInfoList:
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    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:1954']
  href: https://www.ebi.ac.uk/chembl/
  name: chembl
edam: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
  aliasList: [edam_ontology, EDAM_data, EDAM_format, EDAM_identifier, EDAM_operation,
    EDAM_topic, 'MIR:00000189']
  dataResourceInfoList:
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/ontoget.html',
    name: EMBOSS ontoget}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/ontotext.html',
    name: EMBOSS ontotext}
  databaseTerms: ['EDAM_topic:0770', 'MIR:00000189']
  defaultFormat: obo
  description: EMBRACE Data and Methods (EDAM) Ontology.
  displayName: EDAM
  exampleIdentifiers:
    idList: [0338, '1929', 'EDAM_operation:0338', 'EDAM_format:1929', 0000338, 0001929]
  formatInfoList:
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:2549', text]
    dataTerms: ['EDAM_data:2858']
    name: default
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:2549']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:2549', text]
    dataTerms: ['EDAM_data:2858']
    name: obo
    styleInfoList:
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    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw}
    syntaxTerms: ['EDAM_format:2549']
  href: http://edamontology.sourceforge.net/
  name: edam
emdb: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
  dataResourceInfoList:
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/',
    name: EMDB FTP @EMBL-EBI}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ebi.ac.uk/pdbe/',
    name: EMDB/PDBe @EMBL-EBI}
  databaseTerms: ['EDAM_topic:3038', 'MIR:00000020', 'DRCAT:EMDB']
  defaultFormat: map
  description: The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures.
  displayName: EMDB
  exampleIdentifiers:
    idList: [EMD-0439, EMD-0979, EMD-10515, EMD-10658]
  formatInfoList:
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:3989']
    dataTerms: ['EDAM_data:3805']
    name: default
    styleInfoList:
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    syntaxTerms: ['EDAM_format:3989']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:3989']
    dataTerms: ['EDAM_data:3805']
    name: map
    styleInfoList:
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    syntaxTerms: ['EDAM_format:3989']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:3989']
    dataTerms: ['EDAM_data:3805']
    name: bundle
    styleInfoList:
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    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: application/tar+gzip, name: raw}
    syntaxTerms: ['EDAM_format:3989']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:3987']
    dataTerms: ['EDAM_data:3805']
    name: bundlezip
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: application/zip, name: raw}
    syntaxTerms: ['EDAM_format:3987']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:2332']
    dataTerms: ['EDAM_data:3805']
    name: xml
    styleInfoList:
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: default}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: html}
    - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw}
    syntaxTerms: ['EDAM_format:2332']
  href: https://www.ebi.ac.uk/pdbe/emdb/
  name: emdb
ena_coding: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
  aliasList: [emblcds, emcds, em_cds, embl-cds, embl_cds, coding, coding_release,
    coding_update, ena_coding, ena_cds]
  dataResourceInfoList:
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ebi.ac.uk/ena/',
    name: ENA Browser}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ncbi.nlm.nih.gov/books/NBK1763/',
    name: NCBI BLAST blastdbcmd}
  databaseTerms: ['EDAM_topic:3042']
  defaultFormat: embl
  description: ENA Coding is a database of nucleotide sequences of the CDS (coding sequence) features, as annotated in ENA Sequence database. ENA Coding records contain the nucleotide sequence of the CDS region with accompanying annotation from the parent nucleotide entry and the additional automatically generated annotation.
  displayName: ENA Coding
  exampleIdentifiers:
    accessionList: [AAA59452]
    sequenceVersionList: [AAA59452.1]
  formatInfoList:
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1927', em, emblcds]
    dataTerms: ['EDAM_data:2889']
    name: default
    styleInfoList:
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    syntaxTerms: ['EDAM_format:1927']
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    dataTerms: ['EDAM_data:0855']
    name: annot
    styleInfoList:
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    syntaxTerms: ['EDAM_format:1927']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1927', em, emblcds]
    dataTerms: ['EDAM_data:2889']
    name: embl
    styleInfoList:
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    syntaxTerms: ['EDAM_format:1927']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:2183', emblxml, emblcdsxml-1.1]
    dataTerms: ['EDAM_data:2889']
    name: emblxml-1.1
    styleInfoList:
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    syntaxTerms: ['EDAM_format:2183']
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    aliases: ['EDAM_format:2330']
    dataTerms: ['EDAM_data:2018']
    name: entrysize
    styleInfoList:
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    syntaxTerms: ['EDAM_format:2330']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:1954', pearson, fa]
    dataTerms: ['EDAM_data:2046', 'EDAM_data:1929']
    name: fasta
    styleInfoList:
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    syntaxTerms: ['EDAM_format:1954']
  - !!uk.ac.ebi.jdbfetch.info.FormatInfo
    aliases: ['EDAM_format:2332', seqxml-0.4]
    dataTerms: ['EDAM_data:2046']
    name: seqxml
    styleInfoList:
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    syntaxTerms: ['EDAM_format:2332']
  href: https://www.ebi.ac.uk/ena/
  name: ena_coding
ena_geospatial: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
  aliasList: [geospatial, geospatial-release, geospatial-update, ena_geospatial, ena_geo]
  dataResourceInfoList:
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ebi.ac.uk/ena/',
    name: ENA Browser}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ebi.ac.uk/ena/',
    name: ENA Browser}
  databaseTerms: ['EDAM_topic:3042']
  defaultFormat: embl
  description: ENA Geospatial is a database of nucleotide sequences of the ENA Geospatial Sequence.
  displayName: ENA Geospatial
  exampleIdentifiers:
    idList: [ABBY01000001, KR025151]
  formatInfoList:
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    styleInfoList:
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    dataTerms: ['EDAM_data:2046']
    name: fasta
    styleInfoList:
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    syntaxTerms: ['EDAM_format:1954']
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    dataTerms: ['EDAM_data:2046']
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    styleInfoList:
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    syntaxTerms: ['EDAM_format:2332']
  href: https://www.ebi.ac.uk/ena/
  name: ena_geospatial
ena_noncoding: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
  aliasList: [em_ncr, ena_non-coding, ena_non_coding, ena_noncoding, non-coding, non-coding-release,
    non-coding-update, ena_ncr]
  dataResourceInfoList:
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ebi.ac.uk/ena/',
    name: ENA Browser}
  - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'https://www.ncbi.nlm.nih.gov/books/NBK1763/',
    name: NCBI BLAST blastdbcmd}
  databaseTerms: ['EDAM_topic:3042']
  defaultFormat: embl
  description: ENA Non-coding is a database of nucleotide sequences of the non-coding RNA features, as annotated in ENA Sequence database. ENA Non-coding records contain the nucleotide sequence of the RNA feature with accompanying annotation from the parent nucleotide entry and the additional automatically generated annotation.
  displayName: ENA Non-coding
  exampleIdentifiers:
    idList: ['AB012758.1:1..40:tRNA']
  formatInfoList:
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    aliases: ['EDAM_format:1927', em, emblncr]
    dataTerms: ['EDAM_data:2889']
    name: default
    styleInfoList:
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    syntaxTerms: ['EDAM_format:1927']
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    dataTerms: ['EDAM_data:0855']
    name: annot
    styleInfoList:
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  name: ena_rrna
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  description: The ENA Sequence Constructed database division represents complete genomes and other long sequences constructed from segment entries. Instead of containing the sequence, these entries detail how to assemble the sequence from other ENA Sequence entries.
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    sequenceVersionList: [CH003588.1]
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  href: https://www.ebi.ac.uk/ena/
  name: ena_sequence_con
ena_sequence_conexp: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo
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  defaultFormat: embl
  description: The ENA Sequence Constructed database division represents complete genomes and other long sequences constructed from segment entries. Expanded entries include the complete nucleotide sequence for the constructed entry.
  displayName: ENA Sequence Constructed Expanded
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    sequenceVersionList: [AL672111.1]
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  description: The ENA Sequence Version Archive is a repository of all entries which have ever appeared in the EMBL Nucleotide Sequence Databank (EMBL-Bank) or ENA Sequence databases.
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    sequenceVersionList: [Y09633.1, Y09633.4]
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