A list of terms which are most often annotated to the same proteins as the selected term, and the terms least often annotated to the same proteins.
Terms which are over-represented in the proteins annotated to selected term, sorted by probability ratio.
Compared term: this is compared to the selected term
Probability ratio
Ratio of probability of compared term given selected term to probability of compared term =(#together/selected)/(#compared/#all
Probability of term here estimated as fraction of proteins annotated to term.
Probability similarity ratio
Ratio of probability of both terms to probability of either term <=#together/(#selected+#compared-#together)
Probability of term here estimated as fraction of proteins annotated to term.
Count of proteins where both selected and compared terms are annotated
Count of proteins where compared term is annotated
Total count of proteins annotated to selected term
Total count of proteins
NOT is used to make an explicit note that the gene product is not associated with the GO term.GO Consortium documentation
'Contributes_to' appears in a GO annotation when a function of a protein complex is facilitated, but not directly carried out by one of its subunits. GO Consortium documentation
'Colocalizes_with' appears in a GO annotation to indicate a transient or peripheral association of the protein with an organelle or complex. GO Consortium documentation
Electronic annotation created from application of the InterPro to GO mapping over UniProtKB. GO Consortium documentation
Electronic annotation created from application of the Enzyme Commission number to GO mapping over UniProtKB. GO Consortium documentation
Electronic annotation created from application of the Swiss-Prot Keyword to GO mapping over UniProtKB. GO Consortium documentation
Manual annotation created when a curator has searched all the relevant literature for the annotated protein and found no information supporting an annotation to any GO term in a particular ontology. This reference can only be used with the three terms; Molecular Function GO:0003674, Biological Process GO:0008150 and Cellular Component GO:0005575. GO Consortium documentation
Electronic annotation created from the transfer of experimentally verified manual GO annotation data to orthologs using Ensembl orthology data. UniProt-GOA documentation
Electronic annotation created from application of the HAMAP to GO mapping over UniProtKB. GO Consortium documentation
Electronic annotation created from application of the UniProt Subcellular Location to GO mapping over UniProtKB. GO Consortium documentation
Inferred annotation created by the GO Consortium's Reference Genome Project from annotation of evolutionary trees from the PANTHER database. GO Consortium documentation
Inferred from experiment. See GO Consortium documentation.
Inferred by direct assay. See GO Consortium documentation.
Inferred from physical interation. See GO Consortium documentation.
Inferred from mutant phenotype. See GO Consortium documentation.
Inferred from expression pattern. See GO Consortium documentation.
Inferred from genetic interaction. See GO Consortium documentation
Inferred from reviewed computational analysis. See GO Consortium documentation.
Inferred from genomic context. See GO Consortium documentation.
Traceable author statement. See GO Consortium documentation.
Non-traceable author statement. See GO Consortium documentation.
Inferred by curator. See GO Consortium documentation.
No data. See GO Consortium documentation.
Inferred from sequence or structural similarity. See GO Consortium documentation.
Inferred from sequence orthology. See GO Consortium documentation.
Inferred from sequence alignment. See GO Consortium documentation.
Inferred from sequence model. See GO Consortium documentation.
Inferred by electronic annotation. See GO Consortium documentation.
Term A is_a term B means that term A is a subtype of term B.
For example, 'transcription' is a type of 'nucleic acid metabolic process'.
Term A part_of term B means that term A is always a part of term B.
For example, 'transcription' is always a part of 'gene expression'.
Term A regulates term B means that term A regulates term B, but term B may not always be regulated by term A.
A sub-relation of the 'regulates' relationship.
Term A positively_regulates term B means that term B is positively regulated by term A.
A sub-relation of the 'regulates' relationship.
Term A negatively_regulates term B means that term B is negatively regulated by term A.
has_part means that term B always has as part of it term A, but term A may exist independently of term B.
For example, 'protein binding trancription factor activity' always has as a part of it 'protein binding' but 'protein binding' may occur independently of transcription factor activity.
Note that has_part is not a transitive relationship, meaning there is NO implication that gene products annotated to term A could also be correctly associated with term B or any of its parent terms.
Has_part should be read in the opposite direction to the other relationships.
Documentation coming shortly...
The filtered annotation sets you have created can be exported from QuickGO in a number of formats.
The primary format used for annotation files by the GO Consortium. Fields are provided in a 17 column tab-delimited format. The GAF2.1 format specification is described here.
Described here.
The GO Consortium guidelines on the use of the Inferred from Sequence Similarity (ISS) evidence code recommends that the 'with' field be populated with a database identifier.
Where the 'with' field is populated with 'With:Not_supplied', the annotation group that created the annotation did not provide any entry for this field.