Roman Laskowski

    Thornton Group
European Bioinformatics Institute,
Wellcome Trust Genome Campus,
Hinxton,
Cambridge, CB10 1SD,
United Kingdom

Phone Number: +44 (0)1223 492 542
Fax Number: +44 (0)1223 494 468
Email: roman@ebi.ac.uk

Databases

   A database of the known 3D structures of proteins and nucleic acids
   Analysis of a protein's 3D structure to help identify its likely biochemical function
   Enzyme Structures Database
   Sequence Annotated by Structure
   Identification of possible ligands from 3D protein structure or sequence
   Database of drug molecules and their protein target with structural data in the PDB
   Interactive graphs of Pfam domain architecture networks
   Atlas of sidechain-sidechain interactions
   ENCODE protein analysis

Software

   PROCHECK
Program to check stereochemical quality of protein structures
   LigPlot+
GUI version of LIGPLOT, including superposition of related plots
   LIGPLOT
Program to plot schematic diagrams of protein-ligand interactions
   SURFNET
Program for visualizing molecular surfaces, cavities, density distributions and sidechain interactions
   NUCPLOT
Program to plot schematic diagrams of protein-nucleic acid interactions
   X-SITE
Program to identify potential protein-binding ligands using empirically derived sidechain-atom packing preferences. (No longer available)
   Miscellaneous links

Publications

 List of publications