UniProtJAPI

UniProtJAPI UniProt Knowledgebase Release [2014_08] Introduction This library provides a remote API for accessing the UniProt data.

See: Description

Packages 
Package Description
uk.ac.ebi.kraken.annotations  
uk.ac.ebi.kraken.exceptions  
uk.ac.ebi.kraken.interfaces
Interfaces to the protein data sources that are used by kraken.
uk.ac.ebi.kraken.interfaces.annotations  
uk.ac.ebi.kraken.interfaces.blast  
uk.ac.ebi.kraken.interfaces.clustr  
uk.ac.ebi.kraken.interfaces.common
Common Interfaces Common Interfaces used by different data sources wareshoused by Kraken
uk.ac.ebi.kraken.interfaces.factories
Abstract Factories used to generate objects for different data sources wareshoused by Kraken
uk.ac.ebi.kraken.interfaces.go  
uk.ac.ebi.kraken.interfaces.go.toprotein  
uk.ac.ebi.kraken.interfaces.interpro  
uk.ac.ebi.kraken.interfaces.keywordlist  
uk.ac.ebi.kraken.interfaces.msd  
uk.ac.ebi.kraken.interfaces.services  
uk.ac.ebi.kraken.interfaces.uniparc  
uk.ac.ebi.kraken.interfaces.uniprot
UniProt UniProt Interface Package.
uk.ac.ebi.kraken.interfaces.uniprot.citations  
uk.ac.ebi.kraken.interfaces.uniprot.citationsNew  
uk.ac.ebi.kraken.interfaces.uniprot.comments  
uk.ac.ebi.kraken.interfaces.uniprot.dbx  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.aarhusghent  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.agd  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.allergome  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.anu2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.arachnoserver  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.arrayexpress  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.bgee  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.bindingdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.biocyc  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.biogrid  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.brenda  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.burulist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.carbbank  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.cazy  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.cgd  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.chembl  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.chitars  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.cleanex  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.compluyeast2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.conoserver  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.cornea2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ctd  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.cygd  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.dictybase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.dip  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.disprot  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.dmdm  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.dnasu  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.dosaccobs2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.drugbank  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.echobase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.eco2dbase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ecogene  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.eggnog  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.embl  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ensembl  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ensemblbacteria  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ensemblfungi  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ensemblmetazoa  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ensemblplants  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ensemblprotists  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.euhcvdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.eupathdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.evolutionarytrace  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.flybase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.gcrdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.gene3d  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genecards  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genedbspombe  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genefarm  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.geneid  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genetree  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genevestigator  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genew  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genewiki  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genolist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genomereviews  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.genomernai  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.germonline  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.gk  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.glycosuitedb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.go  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.gramene  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.guidetopharmacology  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hamap  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hgnc  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hinvdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hiv  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hogenom  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hovergen  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hpa  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hsc2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.hssp  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.inparanoid  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.intact  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.interpro  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ipi  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.kegg  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ko  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.legiolist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.leproma  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.linkhub  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.listilist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.maize2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.maizedb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.maizegdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.maxqb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.mendel  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.merops  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.mgd  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.mgi  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.mim  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.mint  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.mycoclap  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.mypulist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.nextbio  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.nextprot  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.nmpdr  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ogp  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.oma  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.orphanet  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.orthodb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.panther  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pathwayinteractiondb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.patric  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.paxdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pdbsum  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.peptideatlas  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.peroxibase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pfam  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pharmgkb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.phci2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.phosphosite  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.phossite  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.photolist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.phylomedb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pir  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pirsf  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pmapcutdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pmma2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pombase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pptasedb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pride  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.prints  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pro  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.prodom  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.promex  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.prosite  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.protclustdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.proteinmodelportal  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.pseudocap  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ratheart2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.reactome  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.rebase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.refseq  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.reproduction2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.rgd  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.rzpdprotexp  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.sabiork  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.sagalist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.sgd  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.siena2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.signalink  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.smart  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.smr  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.stringxref  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.stygene  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.subtilist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.supfam  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.swiss2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.tair  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.tcdb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.tigr  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.tigrfams  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.transfac  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.treefam  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.tuberculist  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.twodbaseecoli  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ucd2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.ucsc  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.unicarbkb  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.unigene  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.unipathway  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.unipep  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.vectorbase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.world2dpage  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.wormbase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.wormpep  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.xenbase  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.yepd  
uk.ac.ebi.kraken.interfaces.uniprot.dbx.zfin  
uk.ac.ebi.kraken.interfaces.uniprot.description  
uk.ac.ebi.kraken.interfaces.uniprot.evidences  
uk.ac.ebi.kraken.interfaces.uniprot.features  
uk.ac.ebi.kraken.interfaces.uniprot.genename  
uk.ac.ebi.kraken.interfaces.uniprot.internalsection  
uk.ac.ebi.kraken.interfaces.uniprot.organism  
uk.ac.ebi.kraken.interfaces.uniref  
uk.ac.ebi.kraken.interfaces.uniref.member  
uk.ac.ebi.kraken.interfaces.util