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Using The UniProtJAPI
UniProt Knowledgebase Release [2012_05]
The search service in UniProt uses the standard Lucene query syntax and additionally the following fields are available to enable detailed searches
| reviewed | 'yes' if reviewed (Swiss-Prot) or 'no' unreviewed (TrEmbl) |
| created | Date entry was created, date needs to be valid dd-MMM-yyyy |
| updated | Date the entry was last updated, date needs to be valid dd-MMM-yyyy |
| identifier | Field contains exact match for Iso Form id, accession, and id. |
| expired | All expired(secondary) accessions. |
| id | The id of the entry. |
| ac | The primary accession of the entry |
| pe | The protein existence field |
| nameannotation | Contains all the annotation including protein name, gene name, organelle, primary and secondary accessions. |
| proteinname | Contains all the protein name information as displayed in the flat file. |
| ec | Contains all EC number referenced in a protein name. |
| protein.frag_type | Protein name fragmentation can be fragment, fragments and or precursor. |
| gene | Is an exact match field contain just the gene name |
| gene.name | Gene name information |
| gene.annotation | Contains all the gene information including name, synonym, oln, and orf. |
| gene.synonym | Gene synonym details |
| gene.oln | Gene Ordered Locus Name |
| gene.orf | Gene ORF Name |
| keyword | Entry Keywords |
| go | Go crossreferences |
| comment | All Comments as described in the flat file. |
| comment.[COMMENT_TYPE] | e.g. comment.function will contain all the function comments. |
| organism.name | Organism name information including scientific name, synonym, common name. |
| organism | All Organism information scientific name, synonym, common name, organelle, host, ncbi id, taxon. |
| organism.scientific | Organism's scientific name |
| organism.synonym | Organism's synonym. |
| organism.common | Organism's common name. |
| organism.organelle | Organism's organelle. |
| organism.host | Organism's Host information. |
| organism.ncbi | NCBI Taxonomy identifier. |
| organism.taxon | Taxonomy |
| sequence.length | Sequence length |
| sequence.crc64 | Sequence CRC64 |
| xref | All entry crossreferences. |
| xref.[XREF_TYPE] | e.g. xref.embl will contain all the embl cross references |
| feature | All the feature annotations |
| feature.[FEATURE_TYPE] | e.g. feature.chain will contain all the chain feature annotation. |
| lit | All the literature annotation |
| lit.authors | All the literature authors |
| lit.pubmed | Literature PubMed ids |
| lit.medlin | Literature MedLine ids |
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