UniProt Documentation

UniProtKB/TrEMBL

Release Notes

• UniProtKB/TrEMBL Current Release Notes
• UniProt Release Notes (includes TrEMBL) 2004-Current
• UniProtKB/TrEMBL Old Release Notes 1996-2004

Statistics

• UniProtKB/TrEMBL Current Release Statistics

User Manual

• TrEMBL Protein Database User Manual

UniProtKB/Swiss-Prot

Release Notes

• UniProtKB/Swiss-Prot Current Release Notes
• UniProtKB/Swiss-Prot Old Release Notes

Statistics

• UniProtKB/Swiss-Prot Current Release Statistics

User Manual

• Swiss-Prot Protein Knowledgebase User Manual

General Documents

• UniProtKB/Swiss-Prot user manual
• Submission of sequence data to Swiss-Prot
• UniProtKB/Swiss-Prot annotation: how is biochemical information assigned to sequence entries
• List of abbreviations for journals cited
• List of keywords
• List of organisms (species)
• List of tissues
• List of plasmids
• List of databases cross-referenced in Swiss-Prot

Nomenclature Documents

• List of nomenclature related references for proteins
• Nomenclature of extracellular domains
• Blood group antigens proteins
• CD nomenclature for surface proteins of human leucocytes
• Vertebrate homeotic Hox proteins: nomenclature and index
• Classification of glycosyl hydrolase families and index of GH entries
• Classification of metallothioneins and index of MT entries
• Classification of peptidase families and index of peptidase entries
• Nomenclature and index of allergen sequences
• Definitions of the terminology for ambiguities

Species Specific Documents

Eukaryotes (except fungi)

• Index of MIM entries referenced in UniProtKB/Swiss-Prot
• Index of human proteins with sequence variants
• Human chromosome 1 entries
• Human chromosome 2 entries
• Human chromosome 3 entries
• Human chromosome 4 entries
• Human chromosome 5 entries
• Human chromosome 6 entries
• Human chromosome 7 entries
• Human chromosome 8 entries
• Human chromosome 9 entries
• Human chromosome 10 entries
• Human chromosome 11 entries
• Human chromosome 12 entries
• Human chromosome 13 entries
• Human chromosome 14 entries
• Human chromosome 15 entries
• Human chromosome 16 entries
• Human chromosome 17 entries
• Human chromosome 18 entries
• Human chromosome 19 entries
• Human chromosome 20 entries
• Human chromosome 21 entries
• Human chromosome 22 entries
• Human chromosome X entries
• Human chromosome Y entries
• Index of MGD entries referenced in UniProtKB/Swiss-Prot
• Index of Arabidopsis thaliana entries and their gene designations
• Index of Caenorhabditis elegans entries and WormPep references
• Index of Dictyostelium discoideum entries and DictyDB references
• Index of Drosophila entries and FlyBase references

Prokaryotes and Archebacteria

• Index of Escherichia coli K12 chromosomal entries and EcoGene references
• Index of Bacillus subtilis 168 chromosomal entries and SubtiList references
• Index of Buchnera aphidicola (subsp. Acyrthosiphon pisum) entries
• Index of Haemophilus influenzae RD chromosomal entries
• Index of Helicobacter pylori strain 26695 chromosomal entries
• Index of Methanococcus jannaschii entries
• Index of Mycoplasma genitalium G-37 chromosomal entries
• Index of Mycoplasma pneumoniae strain M129 entries
• Table of putative genes in Rhizobium plasmid pNGR234a
• Index of Rickettsia prowazekii strain Madrid E entries
• Index of Synechocystis strain PCC 6803 entries

Fungi

• Index of Saccharomyces cerevisiae entries and SGD references
• Yeast Chromosome I entries
• Yeast Chromosome II entries
• Yeast Chromosome III entries
• Yeast Chromosome V entries
• Yeast Chromosome VI entries
• Yeast Chromosome VII entries
• Yeast Chromosome VIII entries
• Yeast Chromosome IX entries
• Yeast Chromosome X entries
• Yeast Chromosome XI entries
• Yeast Chromosome XIII entries
• Yeast Chromosome XIV entries
• Index of Candida albicans entries
• Index of Schizosaccharomyces pombe entries

Other Documents

• List of 7-transmembrane G-linked receptors
• List of aminoacyl tRNA synthetases
• List of restriction enzymes and methylases
• List of translation initiation factors
• Index of ribosomal proteins classified by families on the basis of sequence similarities
• List of chloroplast and cyanelle encoded proteins
• Index of intein-containing entries referenced in Swiss-Prot
• Index of X-ray crystallography Protein Data Bank (PDB) entries
• UPF (Uncharacterised Protein Families) list and index of members