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Collapse General Roadshow Information
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EBITrainingEBI User Training ProgrammeRoadshowEstonia

The Bioinformatics Roadshow - Estonia

Course Summary
EBI Roadshow Host: BIIT
Date: 7-10 September 2009
Venue:Computer Science Institute, Liivi 2, Tartu
Host Organiser: Jaak Vilo / Hedi Peterson
EBI Support: EMBL-EBI Events Team
Registration Deadline: 24 August 2009/bursary registration 23 July 2009





Course Overview

What will I learn?

  • Navigating Ensembl and Ensembl Genomes and retrieving/using information
  • Browsing and retrieving data from the ArrayExpress repository and Gene Expression Atlas
  • Fundamental steps in the analysis of gene expression data using Expression Profiler
  • Understanding and exploring Reactome Data
  • Familiarisation with data types, tools and organisation of information within BRENDA
  • An insight into UniProt, IntAct and Interpro and how to effectively use the tools.
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Programme

The roadshow programme, material and related information is available below.

Topic SLING Trainer Duration
Monday 7th September, 2009
PDF DocumentIntroduction to Ensembl
PDF DocumentEnsembl User Interface
PDF DocumentBioMart
PDF DocumentGenebuild
PDF DocumentComparative Genomics		 Michael Schuster 1 day
Tuesday 8th September, 2009
PPTArray Express Atlas Presentation
WORD DOCUMENTArray Express Atlas Tutorial
PPTBioConductor Presentation
PPTExpression Profiler Presentation
WORD DOCUMENTExpression Profiler Tutorial
PPTProgrammatic Access to Array Express Presentation
WORD DOCUMENTProgrammatic Access to Array Express Exercises
WORD DOCUMENTOntologies		 Margus Lukk 1 day
Wednesday 9th September, 2009
PPTReactome Presentation
WORD DOCUMENTReactome Tutorial
PDF DocumentBRENDA Presentation
PDF DocumentBRENDA Exercise		 Sandra Orchard




Andreas Grote, BRENDA representative		 1/2 day
Thursday 8th September, 2009
PPTUniProt InterPro Presentation
WORD DOCUMENTUniProtKB InterPro Tutorial
TEXT DOCUMENTMystery Protein
PPTIntAct Presentation
WORD DOCUMENTIntAct Tutorial
 Sandra Orchard 1 day
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Registration


Please complete the registration form indicating the type of registration you require. Items marked * are mandatory. Incomplete registrations will not be processed.

BIIT Webpage and Registration


A limited number of travel fellowships are available for SLING roadshows. Fellowships are only applicable to persons travelling from outside the host institute and cover a maximum EUR500 per person towards the cost of travel, accommodation and subsistence. If you wish to be considered for a fellowship please ensure your registration is completed before 23/07/09. Selection will take place in the week commencing 27 July and successful applicants will be notified shortly thereafter.
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Trainers include


Ensembl representative
Margus Lukk
Sandra Orchard
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Contact

For further information, to register interest, or book a roadshow - please contact the EMBL-EBI Events Team, T: +44 (0)1223 494444.



The Bioinformatics Roadshow is funded by the European Commission under SLING, grant agreement number 226073 (Integrating Activity) within Research Infrastructures of the FP7 Capacities Specific Programme.



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